Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 H 1.08997 * 109.47021 * 54.99712 * 3 2 1 5 5 C 1.52999 * 109.47452 * 175.00161 * 3 2 1 6 6 N 1.46500 * 109.47382 * 174.99805 * 5 3 2 7 7 C 1.34775 * 119.99972 * 179.97438 * 6 5 3 8 8 O 1.21599 * 119.99992 * 0.02562 * 7 6 5 9 9 C 1.47428 * 120.00019 * 180.02562 * 7 6 5 10 10 C 1.41295 * 126.41205 * 359.97438 * 9 7 6 11 11 N 1.30444 * 108.01985 * 180.02562 * 10 9 7 12 12 N 1.39940 * 108.89995 * 0.02562 * 11 10 9 13 13 C 1.46501 * 125.75320 * 180.02562 * 12 11 10 14 14 C 1.34257 * 108.48782 * 359.97438 * 12 11 10 15 15 N 1.46500 * 109.46978 * 295.00135 * 3 2 1 16 16 C 1.34779 * 120.00383 * 84.99804 * 15 3 2 17 17 O 1.21285 * 119.99337 * 0.02562 * 16 15 3 18 18 C 1.50697 * 120.00610 * 179.97438 * 16 15 3 19 19 S 1.80992 * 109.47400 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00211 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99600 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00303 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99791 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99920 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47472 * 89.99552 * 24 22 20 26 26 H 1.48501 * 109.47301 * 209.99899 * 24 22 20 27 27 H 1.48507 * 109.46907 * 329.99826 * 24 22 20 28 28 H 1.08998 * 109.46345 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.46815 * 299.99839 * 1 2 3 30 30 H 1.08999 * 109.46810 * 60.00450 * 1 2 3 31 31 H 1.09000 * 109.47165 * 240.00641 * 2 1 3 32 32 H 1.08992 * 109.47456 * 119.99612 * 2 1 3 33 33 H 1.09001 * 109.46946 * 54.99482 * 5 3 2 34 34 H 1.09001 * 109.46825 * 295.00535 * 5 3 2 35 35 H 0.96996 * 119.99471 * 0.02562 * 6 5 3 36 36 H 1.08002 * 125.98990 * 359.75209 * 10 9 7 37 37 H 1.09000 * 109.46761 * 269.96577 * 13 12 11 38 38 H 1.08993 * 109.47679 * 29.96566 * 13 12 11 39 39 H 1.08999 * 109.46901 * 149.97281 * 13 12 11 40 40 H 1.08003 * 126.28619 * 179.97438 * 14 12 11 41 41 H 0.96999 * 120.00072 * 264.99584 * 15 3 2 42 42 H 1.09000 * 109.47385 * 300.00723 * 18 16 15 43 43 H 1.09008 * 109.46610 * 59.99854 * 18 16 15 44 44 H 0.97009 * 119.99828 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 4.0630 2.8170 0.0059 7 6 5.3856 3.0633 0.0867 8 8 6.1654 2.1462 0.2586 9 6 5.8869 4.4445 -0.0333 10 6 5.1068 5.6053 -0.2343 11 7 5.9133 6.6292 -0.2876 12 7 7.2285 6.1791 -0.1262 13 6 8.4274 7.0212 -0.1252 14 6 7.2062 4.8457 0.0287 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3670 17 8 -0.3393 2.6326 -0.4341 18 6 0.0365 3.3386 -2.6545 19 16 -1.6420 3.9971 -2.4963 20 6 -1.8438 4.7080 -4.0958 21 1 -1.0439 4.6465 -4.8189 22 6 -3.0311 5.3461 -4.4270 23 7 -3.1820 5.8767 -5.6221 24 14 -4.4148 5.4519 -3.1766 25 1 -4.2622 6.6912 -2.3729 26 1 -5.7203 5.4782 -3.8839 27 1 -4.3620 4.2701 -2.2788 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0378 1.0960 35 1 3.4409 3.5484 -0.1309 36 1 4.0317 5.6386 -0.3316 37 1 8.8092 7.1108 -1.1422 38 1 8.1763 8.0105 0.2570 39 1 9.1887 6.5686 0.5101 40 1 8.0632 4.2047 0.1743 41 1 2.2719 2.1232 -1.9978 42 1 0.7279 4.1541 -2.8668 43 1 0.0679 2.6145 -3.4686 44 1 -4.0117 6.3230 -5.8534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531070502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -2.058834 kcal Electronic energy + Delta-G solvation = -26509.498404 eV Core-core repulsion = 22589.826301 eV Total energy + Delta-G solvation = -3919.672103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.69429 -40.04986 -39.11688 -36.49691 -34.21207 -33.62288 -32.52242 -32.43984 -30.79430 -29.57180 -28.51204 -27.18528 -25.62470 -24.05876 -22.48575 -21.56199 -21.30963 -20.47450 -20.23155 -18.43417 -17.79801 -16.78936 -16.47864 -16.19701 -16.05675 -15.79205 -15.35127 -15.07633 -14.95845 -14.89340 -14.20390 -13.97772 -13.69962 -13.55466 -13.34505 -13.32754 -13.08858 -13.02530 -12.86165 -12.79113 -12.36042 -11.86282 -11.55853 -11.40322 -11.28675 -11.22966 -11.02421 -10.84127 -10.59734 -10.10471 -9.97831 -9.87298 -9.54709 -9.37656 -9.03577 -8.99141 -8.97349 -8.52049 -6.93286 -6.30107 -4.01973 1.18816 1.86257 1.95165 2.71859 2.90030 3.01145 3.23010 3.29668 3.33035 3.48836 3.63493 4.04715 4.31573 4.35475 4.37737 4.58892 4.64885 4.71821 4.78293 4.85847 4.91547 4.98587 5.09093 5.09225 5.20834 5.24516 5.30311 5.44140 5.50031 5.71915 5.73224 5.83450 5.98622 6.00095 6.02906 6.15692 6.20462 6.39619 6.49447 6.55982 7.14649 7.31874 7.55160 7.92911 8.05289 8.40710 8.44754 9.16048 10.79182 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.002784 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.792609 B =10056.764009 C =12364.222377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.116 3.884 6 N -0.726 5.726 7 C 0.598 3.402 8 O -0.553 6.553 9 C -0.297 4.297 10 C 0.085 3.915 11 N -0.293 5.293 12 N -0.365 5.365 13 C 0.096 3.904 14 C 0.128 3.872 15 N -0.734 5.734 16 C 0.531 3.469 17 O -0.510 6.510 18 C -0.126 4.126 19 S -0.139 6.139 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.192 0.808 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.188 0.812 41 H 0.400 0.600 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.833 -5.040 12.387 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.009 4.009 6 N -0.377 5.377 7 C 0.386 3.614 8 O -0.432 6.432 9 C -0.312 4.312 10 C -0.103 4.103 11 N -0.113 5.113 12 N -0.144 5.144 13 C -0.045 4.045 14 C -0.023 4.023 15 N -0.389 5.389 16 C 0.318 3.682 17 O -0.384 6.384 18 C -0.277 4.277 19 S 0.087 5.913 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.208 0.792 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.205 0.795 41 H 0.234 0.766 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.192 -4.270 13.801 26.480 hybrid contribution 0.175 -0.219 -1.253 1.285 sum 22.367 -4.490 12.548 26.036 Atomic orbital electron populations 1.21804 0.94104 1.00732 1.03737 1.21879 0.97713 0.94955 1.02315 1.21268 0.92520 0.94710 0.88604 0.88574 1.21663 0.92545 0.83388 1.03262 1.45732 1.07319 1.09885 1.74802 1.17188 0.81821 0.86884 0.75472 1.90769 1.56066 1.45813 1.50598 1.20225 0.93118 0.94452 1.23393 1.24157 1.00263 0.89181 0.96741 1.77268 0.86674 1.23216 1.24140 1.48487 1.06845 1.05455 1.53568 1.22016 0.82675 0.95872 1.03935 1.22964 0.98882 0.84983 0.95508 1.46091 1.17290 1.59256 1.16296 1.20232 0.80945 0.77576 0.89490 1.90721 1.50336 1.57350 1.40024 1.23297 1.03867 1.03025 0.97471 1.84770 1.11470 1.72654 1.22428 1.22316 1.05592 1.41486 0.97522 0.89424 1.24718 0.97817 0.93589 0.95214 1.69941 1.26882 1.35460 1.19411 0.86736 0.81712 0.81212 0.82181 1.19222 1.19988 1.15909 0.93571 0.92052 0.91810 0.91605 0.91095 0.90700 0.89941 0.76114 0.79172 0.90057 0.88715 0.88985 0.79474 0.76567 0.88569 0.88570 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.52 37.16 0.32 -1.50 16 2 C -0.13 -1.22 5.61 -26.73 -0.15 -1.37 16 3 C 0.13 1.28 2.42 -67.93 -0.16 1.11 16 4 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 5 C 0.12 0.98 5.23 -4.04 -0.02 0.96 16 6 N -0.73 -6.51 5.38 -61.38 -0.33 -6.84 16 7 C 0.60 6.55 7.81 -12.52 -0.10 6.45 16 8 O -0.55 -7.66 16.90 5.28 0.09 -7.57 16 9 C -0.30 -2.94 6.13 -105.07 -0.64 -3.59 16 10 C 0.08 0.83 11.50 -16.98 -0.20 0.63 16 11 N -0.29 -3.18 12.50 30.86 0.39 -2.79 16 12 N -0.37 -3.00 3.98 -67.60 -0.27 -3.27 16 13 C 0.10 0.36 11.44 59.85 0.68 1.04 16 14 C 0.13 1.07 11.30 -16.56 -0.19 0.88 16 15 N -0.73 -7.85 4.47 -53.80 -0.24 -8.09 16 16 C 0.53 8.21 6.42 -10.99 -0.07 8.14 16 17 O -0.51 -9.55 13.00 5.55 0.07 -9.48 16 18 C -0.13 -2.25 6.16 36.00 0.22 -2.03 16 19 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 20 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 21 H 0.09 2.59 8.03 -52.48 -0.42 2.17 16 22 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 23 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 24 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 30 H 0.06 0.96 5.65 -51.93 -0.29 0.67 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 3.29 7.09 -40.82 -0.29 3.00 16 36 H 0.19 1.45 7.50 -52.49 -0.39 1.06 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 40 H 0.19 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.40 3.51 8.60 -40.82 -0.35 3.16 16 42 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 43 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -36.90 385.58 -6.86 -43.76 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.36 Total: 3.68 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.09 Total: -1.01 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.32 Total: -46.58 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.16 Total: -17.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.90 -6.86 -43.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531070502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.701 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds