Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 H 1.08997 * 109.47021 * 54.99712 * 3 2 1 5 5 C 1.52999 * 109.47452 * 175.00161 * 3 2 1 6 6 N 1.46500 * 109.47382 * 174.99805 * 5 3 2 7 7 C 1.34775 * 119.99972 * 179.97438 * 6 5 3 8 8 O 1.21599 * 119.99992 * 0.02562 * 7 6 5 9 9 C 1.47428 * 120.00019 * 180.02562 * 7 6 5 10 10 C 1.41295 * 126.41205 * 359.97438 * 9 7 6 11 11 N 1.30444 * 108.01985 * 180.02562 * 10 9 7 12 12 N 1.39940 * 108.89995 * 0.02562 * 11 10 9 13 13 C 1.46501 * 125.75320 * 180.02562 * 12 11 10 14 14 C 1.34257 * 108.48782 * 359.97438 * 12 11 10 15 15 N 1.46500 * 109.46978 * 295.00135 * 3 2 1 16 16 C 1.34779 * 120.00383 * 84.99804 * 15 3 2 17 17 O 1.21285 * 119.99337 * 0.02562 * 16 15 3 18 18 C 1.50697 * 120.00610 * 179.97438 * 16 15 3 19 19 S 1.80992 * 109.47400 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00211 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99600 * 0.02562 * 20 19 18 22 22 C 1.38797 * 120.00303 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99791 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99920 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47472 * 89.99552 * 24 22 20 26 26 H 1.48501 * 109.47301 * 209.99899 * 24 22 20 27 27 H 1.48507 * 109.46907 * 329.99826 * 24 22 20 28 28 H 1.08998 * 109.46345 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.46815 * 299.99839 * 1 2 3 30 30 H 1.08999 * 109.46810 * 60.00450 * 1 2 3 31 31 H 1.09000 * 109.47165 * 240.00641 * 2 1 3 32 32 H 1.08992 * 109.47456 * 119.99612 * 2 1 3 33 33 H 1.09001 * 109.46946 * 54.99482 * 5 3 2 34 34 H 1.09001 * 109.46825 * 295.00535 * 5 3 2 35 35 H 0.96996 * 119.99471 * 0.02562 * 6 5 3 36 36 H 1.08002 * 125.98990 * 359.75209 * 10 9 7 37 37 H 1.09000 * 109.46761 * 269.96577 * 13 12 11 38 38 H 1.08993 * 109.47679 * 29.96566 * 13 12 11 39 39 H 1.08999 * 109.46901 * 149.97281 * 13 12 11 40 40 H 1.08003 * 126.28619 * 179.97438 * 14 12 11 41 41 H 0.96999 * 120.00072 * 264.99584 * 15 3 2 42 42 H 1.09000 * 109.47385 * 300.00723 * 18 16 15 43 43 H 1.09008 * 109.46610 * 59.99854 * 18 16 15 44 44 H 0.97009 * 119.99828 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 7 4.0630 2.8170 0.0059 7 6 5.3856 3.0633 0.0867 8 8 6.1654 2.1462 0.2586 9 6 5.8869 4.4445 -0.0333 10 6 5.1068 5.6053 -0.2343 11 7 5.9133 6.6292 -0.2876 12 7 7.2285 6.1791 -0.1262 13 6 8.4274 7.0212 -0.1252 14 6 7.2062 4.8457 0.0287 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3670 17 8 -0.3393 2.6326 -0.4341 18 6 0.0365 3.3386 -2.6545 19 16 -1.6420 3.9971 -2.4963 20 6 -1.8438 4.7080 -4.0958 21 1 -1.0439 4.6465 -4.8189 22 6 -3.0311 5.3461 -4.4270 23 7 -3.1820 5.8767 -5.6221 24 14 -4.4148 5.4519 -3.1766 25 1 -4.2622 6.6912 -2.3729 26 1 -5.7203 5.4782 -3.8839 27 1 -4.3620 4.2701 -2.2788 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.9954 0.8312 -0.6659 34 1 3.8499 1.0378 1.0960 35 1 3.4409 3.5484 -0.1309 36 1 4.0317 5.6386 -0.3316 37 1 8.8092 7.1108 -1.1422 38 1 8.1763 8.0105 0.2570 39 1 9.1887 6.5686 0.5101 40 1 8.0632 4.2047 0.1743 41 1 2.2719 2.1232 -1.9978 42 1 0.7279 4.1541 -2.8668 43 1 0.0679 2.6145 -3.4686 44 1 -4.0117 6.3230 -5.8534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001531070502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = -29.990203 kcal Electronic energy + Delta-G solvation = -26510.709599 eV Core-core repulsion = 22589.826301 eV Total energy + Delta-G solvation = -3920.883298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.35632 -41.09831 -40.05043 -37.50449 -35.02083 -34.65391 -34.23757 -33.58003 -31.51300 -30.74773 -29.44109 -27.86526 -27.72522 -24.85172 -23.22761 -22.54718 -21.94433 -21.54788 -20.99476 -19.88178 -19.03421 -17.95266 -17.47637 -17.06650 -17.04001 -16.70509 -16.63069 -16.43858 -16.01607 -15.63262 -15.53955 -15.01892 -14.83759 -14.76028 -14.59905 -14.26067 -13.94714 -13.81452 -13.54198 -13.46104 -13.45551 -13.31310 -13.02842 -12.89483 -12.66823 -12.44294 -12.15187 -12.02708 -11.84435 -11.72625 -11.15394 -10.95690 -10.85957 -10.61864 -10.49400 -10.17876 -10.03408 -9.65234 -8.94918 -8.49944 -6.19277 0.53674 1.02493 1.13045 1.32638 1.44387 1.48410 1.58409 1.65677 2.18830 2.26025 2.35986 2.47052 2.75165 2.88673 3.51044 3.60097 3.79379 3.93343 4.02976 4.11600 4.14992 4.18511 4.29588 4.41497 4.45473 4.52786 4.54833 4.59316 4.66370 4.69861 4.78430 4.88913 4.99268 5.10824 5.22586 5.34690 5.44580 5.52280 5.57916 5.72314 5.87109 6.13564 6.45524 6.51390 6.58823 6.95641 7.25921 7.27767 8.62621 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010056 B = 0.002784 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.792609 B =10056.764009 C =12364.222377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.142 3.858 4 H 0.085 0.915 5 C 0.123 3.877 6 N -0.719 5.719 7 C 0.600 3.400 8 O -0.586 6.586 9 C -0.319 4.319 10 C 0.081 3.919 11 N -0.330 5.330 12 N -0.363 5.363 13 C 0.085 3.915 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.541 3.459 17 O -0.544 6.544 18 C -0.115 4.115 19 S -0.169 6.169 20 C -0.528 4.528 21 H 0.060 0.940 22 C 0.043 3.957 23 N -0.920 5.920 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.262 1.262 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.408 0.592 36 H 0.203 0.797 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.213 0.787 41 H 0.413 0.587 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.564 -5.957 13.632 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.037 3.963 4 H 0.103 0.897 5 C -0.001 4.001 6 N -0.370 5.370 7 C 0.389 3.611 8 O -0.467 6.467 9 C -0.334 4.334 10 C -0.106 4.106 11 N -0.151 5.151 12 N -0.141 5.141 13 C -0.054 4.054 14 C -0.018 4.018 15 N -0.365 5.365 16 C 0.326 3.674 17 O -0.421 6.421 18 C -0.266 4.266 19 S 0.058 5.942 20 C -0.676 4.676 21 H 0.078 0.922 22 C -0.162 4.162 23 N -0.558 5.558 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.187 1.187 27 H -0.158 1.158 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.219 0.781 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.229 0.771 41 H 0.250 0.750 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.953 -5.177 15.030 28.748 hybrid contribution -0.167 0.032 -1.651 1.660 sum 23.787 -5.145 13.379 27.772 Atomic orbital electron populations 1.21742 0.96314 1.00648 1.01436 1.21862 0.95471 0.94843 1.04151 1.21297 0.93225 0.94662 0.87132 0.89729 1.21632 0.91205 0.83220 1.04004 1.45697 1.06949 1.10307 1.74076 1.17299 0.81967 0.86910 0.74881 1.90747 1.56846 1.46704 1.52436 1.20289 0.93992 0.94012 1.25131 1.24383 1.00926 0.89010 0.96286 1.77200 0.88133 1.24229 1.25493 1.48830 1.06976 1.05909 1.52370 1.22399 0.81792 0.95745 1.05447 1.23393 0.99183 0.85265 0.93984 1.45833 1.15666 1.57626 1.17364 1.19725 0.82008 0.77688 0.87959 1.90723 1.51708 1.58955 1.40747 1.23297 0.99826 1.03864 0.99577 1.84649 1.16945 1.72875 1.19739 1.22495 1.04830 1.41319 0.98910 0.92175 1.25584 1.00237 0.93404 0.96936 1.70026 1.27942 1.36645 1.21171 0.85858 0.79238 0.81233 0.79983 1.18702 1.18673 1.15831 0.92558 0.93722 0.94687 0.90309 0.88724 0.89915 0.89194 0.75601 0.78071 0.88913 0.88642 0.85983 0.77058 0.74983 0.86959 0.87477 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.52 71.98 0.61 -2.78 16 2 C -0.12 -2.01 5.61 30.60 0.17 -1.84 16 3 C 0.14 2.37 2.42 44.99 0.11 2.48 16 4 H 0.08 1.72 7.58 -2.39 -0.02 1.70 16 5 C 0.12 1.76 5.23 86.38 0.45 2.21 16 6 N -0.72 -11.55 5.38 -466.38 -2.51 -14.06 16 7 C 0.60 12.24 7.81 86.66 0.68 12.91 16 8 O -0.59 -15.29 16.90 -4.03 -0.07 -15.36 16 9 C -0.32 -5.94 6.13 -20.15 -0.12 -6.07 16 10 C 0.08 1.53 11.50 85.65 0.99 2.51 16 11 N -0.33 -6.93 12.50 -56.27 -0.70 -7.63 16 12 N -0.36 -5.42 3.98 -367.79 -1.46 -6.88 16 13 C 0.09 0.47 11.44 127.77 1.46 1.93 16 14 C 0.13 2.01 11.30 84.27 0.95 2.96 16 15 N -0.71 -13.73 4.47 -442.53 -1.98 -15.71 16 16 C 0.54 16.06 6.42 87.66 0.56 16.62 16 17 O -0.54 -20.09 13.00 -3.05 -0.04 -20.13 16 18 C -0.11 -4.00 6.16 71.23 0.44 -3.56 16 19 S -0.17 -8.16 18.55 -56.49 -1.05 -9.21 16 20 C -0.53 -30.22 10.04 67.95 0.68 -29.53 16 21 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 22 C 0.04 2.53 5.50 84.86 0.47 3.00 16 23 N -0.92 -55.91 13.97 21.65 0.30 -55.61 16 24 Si 0.91 44.56 27.74 68.60 1.90 46.47 16 25 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 27 H -0.23 -11.31 6.74 99.48 0.67 -10.64 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.04 1.18 7.85 -2.39 -0.02 1.16 16 30 H 0.03 1.02 5.65 -2.39 -0.01 1.01 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.41 5.94 7.09 -92.71 -0.66 5.28 16 36 H 0.20 2.94 7.50 -2.91 -0.02 2.92 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.41 6.14 8.60 -92.71 -0.80 5.34 16 42 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 43 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -81.20 385.58 1.39 -79.81 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.46 Total: 17.45 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 7.45 Total: 0.85 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -6.35 Total: -99.89 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.11 Total: -35.49 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.05 Total: -9.21 kcal Total: -81.20 1.39 -79.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531070502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.823 kcal (2) G-P(sol) polarization free energy of solvation -81.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds