Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46801 * 2 1 4 4 C 1.35363 * 126.38750 * 84.99911 * 3 2 1 5 5 C 1.41503 * 105.50631 * 180.02562 * 4 3 2 6 6 C 1.47705 * 126.51953 * 179.97438 * 5 4 3 7 7 O 1.21573 * 120.00307 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00119 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00166 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47168 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.47002 * 294.99717 * 10 9 8 12 12 C 1.52997 * 109.47127 * 175.00143 * 10 9 8 13 13 N 1.46492 * 109.47363 * 54.99843 * 10 9 8 14 14 C 1.34772 * 120.00385 * 205.00351 * 13 10 9 15 15 O 1.21278 * 119.99770 * 359.97438 * 14 13 10 16 16 C 1.50705 * 120.00486 * 180.02562 * 14 13 10 17 17 S 1.80999 * 109.47084 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99558 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99627 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99592 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47025 * 60.00394 * 22 20 18 24 24 H 1.48503 * 109.46467 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47044 * 299.99733 * 22 20 18 26 26 N 1.31809 * 106.96020 * 0.26442 * 5 4 3 27 27 N 1.28467 * 110.07293 * 359.55547 * 26 5 4 28 28 H 0.97003 * 124.88383 * 180.20153 * 27 26 5 29 29 H 1.08999 * 109.47110 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47436 * 300.00431 * 1 2 3 31 31 H 1.08997 * 109.46772 * 60.00420 * 1 2 3 32 32 H 1.08998 * 109.47157 * 240.00096 * 2 1 3 33 33 H 1.08997 * 109.46772 * 119.99580 * 2 1 3 34 34 H 1.08000 * 127.24677 * 0.02562 * 4 3 2 35 35 H 0.97003 * 119.99697 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47236 * 59.99976 * 9 8 6 37 37 H 1.09007 * 109.47365 * 300.00023 * 9 8 6 38 38 H 1.09004 * 109.47261 * 59.99697 * 12 10 9 39 39 H 1.09002 * 109.47153 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47289 * 299.99953 * 12 10 9 41 41 H 0.97012 * 120.00025 * 25.00061 * 13 10 9 42 42 H 1.08998 * 109.46823 * 299.99865 * 16 14 13 43 43 H 1.08996 * 109.47135 * 59.99371 * 16 14 13 44 44 H 0.97001 * 120.00394 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2104 2.2096 1.0856 5 6 2.6919 3.4417 0.5831 6 6 3.0405 4.6383 1.3757 7 8 2.9226 4.6215 2.5856 8 7 3.4892 5.7487 0.7578 9 6 3.8355 6.9353 1.5440 10 6 4.3133 8.0465 0.6069 11 1 5.2409 7.7402 0.1234 12 6 4.5560 9.3241 1.4129 13 7 3.2916 8.2988 -0.4122 14 6 3.6419 8.8280 -1.6011 15 8 4.8029 9.0959 -1.8271 16 6 2.5908 9.0881 -2.6493 17 16 3.3694 9.7967 -4.1217 18 6 1.9535 9.9932 -5.1519 19 1 0.9785 9.7003 -4.7913 20 6 2.0911 10.5253 -6.4264 21 7 3.2793 10.8826 -6.8657 22 14 0.5900 10.7329 -7.5189 23 1 -0.3835 11.6371 -6.8558 24 1 1.0022 11.3173 -8.8204 25 1 -0.0415 9.4087 -7.7492 26 7 2.7641 3.3205 -0.7275 27 7 2.3880 2.1447 -1.0830 28 1 2.3598 1.8243 -1.9981 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0241 1.9527 2.1179 35 1 3.5830 5.7622 -0.2076 36 1 4.6301 6.6861 2.2473 37 1 2.9578 7.2762 2.0933 38 1 5.3163 9.1364 2.1712 39 1 4.8968 10.1156 0.7454 40 1 3.6284 9.6305 1.8965 41 1 2.3628 8.0848 -0.2313 42 1 2.1006 8.1508 -2.9125 43 1 1.8519 9.7870 -2.2574 44 1 3.3755 11.2542 -7.7565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533992953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = -15.995000 kcal Electronic energy + Delta-G solvation = -26080.058250 eV Core-core repulsion = 22159.781829 eV Total energy + Delta-G solvation = -3920.276421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.02036 -39.91295 -39.07684 -36.32204 -34.79914 -33.76664 -32.44048 -32.22338 -31.37326 -29.73761 -28.58620 -26.90890 -25.49295 -24.26561 -23.75263 -21.75276 -21.41094 -20.35073 -20.15668 -18.06442 -17.92776 -17.25474 -16.59564 -16.38697 -16.09629 -15.70856 -15.02740 -14.88441 -14.87766 -14.81050 -14.38106 -14.14399 -14.03856 -13.70638 -13.30222 -13.09244 -12.96837 -12.91168 -12.68091 -12.56364 -12.12301 -12.03222 -11.82633 -11.70274 -11.16472 -11.08819 -11.05445 -11.04790 -10.77725 -10.38455 -9.83546 -9.75209 -9.44954 -9.32093 -9.25692 -9.07913 -8.98006 -8.25185 -6.50888 -6.22618 -3.93112 1.29760 1.75628 2.47562 2.89925 3.02704 3.08598 3.20723 3.22247 3.26444 3.30112 3.69488 4.09175 4.18105 4.19475 4.42166 4.45844 4.73247 4.90711 4.96062 5.03625 5.11025 5.12470 5.17552 5.19302 5.31312 5.35867 5.38232 5.50573 5.56904 5.62109 5.66733 5.68327 5.87828 5.95690 6.03121 6.08089 6.13832 6.23368 6.59730 6.61973 7.21928 7.57176 7.58238 7.66498 7.98679 8.34007 8.58023 9.22613 10.84716 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009284 B = 0.002548 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.359727 B =10984.855458 C =13487.448679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C 0.016 3.984 4 C -0.175 4.175 5 C -0.015 4.015 6 C 0.606 3.394 7 O -0.535 6.535 8 N -0.716 5.716 9 C 0.113 3.887 10 C 0.132 3.868 11 H 0.096 0.904 12 C -0.161 4.161 13 N -0.737 5.737 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 N -0.251 5.251 27 N -0.376 5.376 28 H 0.446 0.554 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.412 0.588 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -20.343 17.030 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.094 4.094 3 C -0.110 4.110 4 C -0.203 4.203 5 C -0.175 4.175 6 C 0.390 3.610 7 O -0.410 6.410 8 N -0.369 5.369 9 C -0.011 4.011 10 C 0.026 3.974 11 H 0.114 0.886 12 C -0.220 4.220 13 N -0.392 5.392 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.200 1.200 26 N -0.087 5.087 27 N -0.091 5.091 28 H 0.291 0.709 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.179 0.821 35 H 0.248 0.752 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.582 -19.183 16.468 25.331 hybrid contribution -2.960 -0.821 -0.692 3.149 sum -4.543 -20.004 15.776 25.878 Atomic orbital electron populations 1.21791 0.93879 1.02378 1.02783 1.20134 0.96550 0.88570 1.04098 1.21484 1.05242 0.96989 0.87290 1.21478 1.06811 0.92248 0.99798 1.21877 1.08830 0.96879 0.89961 1.16860 0.76757 0.81108 0.86254 1.90796 1.54032 1.83010 1.13138 1.45856 1.66456 1.12665 1.11875 1.21765 1.01654 0.83830 0.93878 1.21145 0.93198 0.94324 0.88718 0.88629 1.22114 1.02109 0.97502 1.00241 1.46143 1.10987 1.66995 1.15095 1.20313 0.89934 0.75953 0.81751 1.90705 1.19711 1.49511 1.78956 1.23539 1.01036 1.05049 1.00848 1.85381 1.12625 1.80206 1.05008 1.22826 0.94522 1.49037 1.02028 0.91016 1.24986 0.96875 0.94686 0.97010 1.70002 1.22107 1.39722 1.18462 0.86234 0.81620 0.78590 0.79113 1.19935 1.20807 1.19973 1.73619 1.17672 1.02537 1.14920 1.43352 1.47277 1.08373 1.10071 0.70929 0.91646 0.91834 0.92569 0.90512 0.88966 0.82055 0.75194 0.89704 0.90516 0.91466 0.91030 0.92157 0.76711 0.89248 0.89235 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.90 37.16 0.37 -0.25 16 2 C -0.05 -0.22 6.49 -27.88 -0.18 -0.40 16 3 C 0.02 0.11 6.48 -82.21 -0.53 -0.42 16 4 C -0.18 -1.70 10.73 -39.36 -0.42 -2.12 16 5 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 6 C 0.61 7.66 7.82 -12.39 -0.10 7.56 16 7 O -0.53 -7.98 16.93 5.30 0.09 -7.89 16 8 N -0.72 -7.87 5.38 -61.29 -0.33 -8.20 16 9 C 0.11 1.10 5.23 -4.04 -0.02 1.08 16 10 C 0.13 1.45 2.73 -67.93 -0.19 1.27 16 11 H 0.10 1.22 7.58 -51.93 -0.39 0.83 16 12 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 13 N -0.74 -9.33 4.52 -53.81 -0.24 -9.58 16 14 C 0.53 9.54 7.81 -10.99 -0.09 9.45 16 15 O -0.52 -11.21 15.52 5.56 0.09 -11.12 16 16 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 17 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 18 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 22 Si 0.92 21.31 29.55 -169.99 -5.02 16.28 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 N -0.25 -2.76 11.92 33.42 0.40 -2.37 16 27 N -0.38 -2.96 6.83 33.50 0.23 -2.73 16 28 H 0.45 2.12 8.96 -190.44 -1.71 0.41 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.31 8.14 -51.94 -0.42 -0.12 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.41 4.64 7.86 -40.82 -0.32 4.32 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.40 4.21 8.60 -40.81 -0.35 3.86 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -36.81 395.62 -9.10 -45.91 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.81 Total: 4.43 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.98 Total: -1.59 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.79 Total: -48.19 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.18 Total: -19.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.81 -9.10 -45.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533992953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.917 kcal (2) G-P(sol) polarization free energy of solvation -36.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds