Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29946 * 126.28763 * 2 1 4 4 O 1.21298 * 110.25435 * 179.72574 * 3 2 1 5 5 C 1.33648 * 109.80712 * 0.46930 * 4 3 2 6 6 C 1.50697 * 126.54951 * 179.80288 * 5 4 3 7 7 H 1.08998 * 109.46862 * 194.69291 * 6 5 4 8 8 C 1.52997 * 109.47466 * 74.68736 * 6 5 4 9 9 N 1.46906 * 109.47180 * 314.68270 * 6 5 4 10 10 C 1.46897 * 111.00172 * 205.00376 * 9 6 5 11 11 H 1.09000 * 112.84874 * 336.19439 * 10 9 6 12 12 C 1.53773 * 113.61515 * 107.50678 * 10 9 6 13 13 C 1.53781 * 87.08112 * 139.98158 * 12 10 9 14 14 H 1.09007 * 113.68908 * 220.00773 * 13 12 10 15 15 N 1.46494 * 113.61615 * 89.11834 * 13 12 10 16 16 C 1.34774 * 120.00281 * 107.50176 * 15 13 12 17 17 O 1.21278 * 119.99981 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00127 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47272 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00014 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99617 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99914 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00067 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46810 * 90.00159 * 24 22 20 26 26 H 1.48496 * 109.47220 * 210.00395 * 24 22 20 27 27 H 1.48500 * 109.46909 * 330.00604 * 24 22 20 28 28 C 1.53778 * 87.07959 * 334.56485 * 13 12 10 29 29 N 1.31130 * 106.89771 * 359.53935 * 5 4 3 30 30 H 1.09001 * 109.47194 * 269.97326 * 1 2 3 31 31 H 1.08999 * 109.47262 * 29.97357 * 1 2 3 32 32 H 1.08995 * 109.47372 * 149.97211 * 1 2 3 33 33 H 1.09002 * 109.47153 * 59.99773 * 8 6 5 34 34 H 1.09001 * 109.46832 * 299.99964 * 8 6 5 35 35 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 36 36 H 1.00896 * 110.99793 * 328.95900 * 9 6 5 37 37 H 1.09003 * 113.61543 * 254.52732 * 12 10 9 38 38 H 1.08996 * 113.61634 * 25.43145 * 12 10 9 39 39 H 0.97006 * 120.00180 * 287.50187 * 15 13 12 40 40 H 1.09003 * 109.47267 * 300.00064 * 18 16 15 41 41 H 1.09007 * 109.46891 * 60.00215 * 18 16 15 42 42 H 0.96996 * 119.99996 * 179.97438 * 23 22 20 43 43 H 1.09000 * 113.61480 * 270.88563 * 28 13 12 44 44 H 1.09006 * 113.68626 * 139.99503 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 0.0054 5 6 3.5298 -0.6211 -0.0007 6 6 4.7969 -1.4369 -0.0013 7 1 4.5650 -2.4681 -0.2675 8 6 5.4282 -1.3994 1.3919 9 7 5.7385 -0.8784 -0.9808 10 6 6.6807 -1.9035 -1.4492 11 1 6.8022 -2.7223 -0.7401 12 6 6.4182 -2.3686 -2.8912 13 6 7.9441 -2.3782 -3.0823 14 1 8.2663 -2.0012 -4.0531 15 7 8.5715 -3.6545 -2.7310 16 6 9.0412 -4.4641 -3.7007 17 8 8.9440 -4.1363 -4.8643 18 6 9.6871 -5.7768 -3.3392 19 16 10.2094 -6.6282 -4.8486 20 6 10.9103 -8.0864 -4.1506 21 1 10.9162 -8.2231 -3.0792 22 6 11.4547 -9.0591 -4.9775 23 7 11.4479 -8.8922 -6.2831 24 14 12.1971 -10.6054 -4.2375 25 1 11.1477 -11.6490 -4.1161 26 1 13.2879 -11.0999 -5.1155 27 1 12.7458 -10.2963 -2.8926 28 6 8.0123 -1.3287 -1.9604 29 7 2.3030 -1.0841 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.7296 -1.8139 2.1187 34 1 5.6602 -0.3682 1.6580 35 1 6.3445 -1.9899 1.3916 36 1 5.2473 -0.4578 -1.7553 37 1 5.9640 -3.3574 -2.9552 38 1 5.9062 -1.6261 -3.5031 39 1 8.6490 -3.9170 -1.8003 40 1 10.5555 -5.5924 -2.7066 41 1 8.9710 -6.3982 -2.8013 42 1 11.8287 -9.5718 -6.8610 43 1 7.9360 -0.3018 -2.3180 44 1 8.8446 -1.4766 -1.2724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566782551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = 53.637390 kcal Electronic energy + Delta-G solvation = -25876.990509 eV Core-core repulsion = 21959.733575 eV Total energy + Delta-G solvation = -3917.256934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.03981 -40.35028 -38.51322 -36.75067 -36.28917 -33.43408 -32.45339 -32.39991 -30.09199 -29.54937 -28.82859 -25.98457 -25.56306 -25.36731 -23.88788 -23.34370 -21.17180 -20.85573 -19.67402 -18.56832 -17.95199 -17.82701 -16.80386 -16.47005 -16.07251 -15.87825 -15.04955 -14.98778 -14.82011 -14.56849 -14.23252 -14.08303 -13.97961 -13.51243 -13.36621 -13.14777 -12.97263 -12.84607 -12.77692 -12.64884 -12.56540 -12.14272 -11.94063 -11.85527 -11.78493 -11.48653 -11.08124 -11.04426 -10.99664 -10.78419 -10.66930 -10.33698 -9.83338 -9.45646 -9.11043 -9.07636 -8.87365 -8.25989 -6.52180 -6.23386 -3.94216 0.65625 1.72971 2.28513 2.95459 2.97726 3.02014 3.21119 3.26445 3.30173 3.47950 3.65718 3.70534 4.18631 4.21110 4.26983 4.30932 4.55926 4.63798 4.67971 4.70573 4.87849 4.92414 5.03314 5.09873 5.11280 5.11918 5.26319 5.38041 5.40729 5.43166 5.51534 5.55284 5.57749 5.68069 5.72359 5.75055 5.85458 5.94300 6.10538 6.35390 6.65831 6.67737 7.57767 7.65502 7.71747 8.33384 8.56715 9.21988 10.84025 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023006 B = 0.001679 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.772428 B =16676.545083 C =16944.950387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.166 3.834 3 N -0.385 5.385 4 O 0.092 5.908 5 C 0.180 3.820 6 C 0.179 3.821 7 H 0.094 0.906 8 C -0.142 4.142 9 N -0.668 5.668 10 C 0.065 3.935 11 H 0.103 0.897 12 C -0.182 4.182 13 C 0.125 3.875 14 H 0.106 0.894 15 N -0.722 5.722 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.130 4.130 29 N -0.478 5.478 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.350 0.650 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.099 0.901 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.958 18.579 16.820 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.093 5.093 4 O 0.033 5.967 5 C -0.041 4.041 6 C 0.068 3.932 7 H 0.112 0.888 8 C -0.201 4.201 9 N -0.300 5.300 10 C -0.045 4.045 11 H 0.121 0.879 12 C -0.223 4.223 13 C 0.018 3.982 14 H 0.124 0.876 15 N -0.375 5.375 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.169 4.169 29 N -0.212 5.212 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.170 0.830 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.232 0.768 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.118 0.882 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.306 19.818 15.166 30.369 hybrid contribution 0.078 -2.075 1.686 2.675 sum -17.228 17.743 16.853 29.927 Atomic orbital electron populations 1.20159 0.82786 1.04837 1.04400 1.25954 1.00707 0.83384 1.00612 1.74678 0.89506 1.23922 1.21146 1.85340 1.22023 1.24420 1.64915 1.28861 0.96666 0.82450 0.96137 1.20162 0.82215 0.94240 0.96579 0.88826 1.21894 1.01339 1.04129 0.92747 1.60667 1.18994 1.31976 1.18378 1.23269 0.93355 0.93159 0.94741 0.87865 1.24182 0.98259 1.02816 0.97005 1.21590 0.92144 0.84502 0.99919 0.87631 1.45715 1.62264 1.19809 1.09760 1.20343 0.77114 0.85103 0.85369 1.90704 1.55285 1.74021 1.18842 1.23538 1.02944 0.96309 1.07652 1.85415 1.75926 1.19315 1.02680 1.22866 1.45008 1.05178 0.95391 0.90909 1.24991 0.95458 0.98415 0.94700 1.70014 1.42910 1.34635 1.02693 0.86167 0.78735 0.81674 0.78920 1.20281 1.20735 1.19690 1.23430 0.96629 0.99492 0.97319 1.71923 0.99612 1.29595 1.20116 0.89235 0.89386 0.88910 0.91667 0.90826 0.90215 0.82988 0.90660 0.89103 0.76803 0.89127 0.89221 0.92164 0.88240 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.17 1.52 8.22 -156.37 -1.28 0.24 16 3 N -0.39 -3.97 12.16 30.90 0.38 -3.59 16 4 O 0.09 0.88 11.31 18.09 0.20 1.08 16 5 C 0.18 1.51 7.00 -13.06 -0.09 1.42 16 6 C 0.18 1.11 3.01 -68.86 -0.21 0.90 16 7 H 0.09 0.57 7.84 -51.93 -0.41 0.16 16 8 C -0.14 -0.73 9.39 37.16 0.35 -0.38 16 9 N -0.67 -4.06 6.42 -100.11 -0.64 -4.70 16 10 C 0.06 0.41 3.75 -66.91 -0.25 0.16 16 11 H 0.10 0.58 7.49 -51.93 -0.39 0.19 16 12 C -0.18 -1.53 7.49 -25.92 -0.19 -1.73 16 13 C 0.13 1.29 4.32 -67.12 -0.29 1.00 16 14 H 0.11 1.33 7.47 -51.92 -0.39 0.94 16 15 N -0.72 -8.63 5.26 -53.02 -0.28 -8.91 16 16 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 17 O -0.51 -11.32 15.46 5.56 0.09 -11.24 16 18 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 21 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 24 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C -0.13 -0.92 7.63 -25.92 -0.20 -1.12 16 29 N -0.48 -4.66 11.55 -9.87 -0.11 -4.77 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.34 7.74 -51.93 -0.40 -0.06 16 36 H 0.35 2.18 7.81 -39.29 -0.31 1.88 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.70 7.82 -51.93 -0.41 0.30 16 39 H 0.40 3.55 8.70 -40.82 -0.36 3.19 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -35.42 389.55 -8.88 -44.30 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.43 Total: 0.49 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.46 Total: -5.65 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.07 Total: -47.19 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.29 Total: -10.15 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.42 -8.88 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.935 kcal (2) G-P(sol) polarization free energy of solvation -35.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds