Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29946 * 126.28763 * 2 1 4 4 O 1.21298 * 110.25435 * 179.72574 * 3 2 1 5 5 C 1.33648 * 109.80712 * 0.46930 * 4 3 2 6 6 C 1.50697 * 126.54951 * 179.80288 * 5 4 3 7 7 H 1.08998 * 109.46862 * 194.69291 * 6 5 4 8 8 C 1.52997 * 109.47466 * 74.68736 * 6 5 4 9 9 N 1.46906 * 109.47180 * 314.68270 * 6 5 4 10 10 C 1.46897 * 111.00172 * 205.00376 * 9 6 5 11 11 H 1.09000 * 112.84874 * 336.19439 * 10 9 6 12 12 C 1.53773 * 113.61515 * 107.50678 * 10 9 6 13 13 C 1.53781 * 87.08112 * 139.98158 * 12 10 9 14 14 H 1.09007 * 113.68908 * 220.00773 * 13 12 10 15 15 N 1.46494 * 113.61615 * 89.11834 * 13 12 10 16 16 C 1.34774 * 120.00281 * 107.50176 * 15 13 12 17 17 O 1.21278 * 119.99981 * 359.97438 * 16 15 13 18 18 C 1.50702 * 120.00127 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47272 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00014 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99617 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99914 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00067 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00040 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46810 * 90.00159 * 24 22 20 26 26 H 1.48496 * 109.47220 * 210.00395 * 24 22 20 27 27 H 1.48500 * 109.46909 * 330.00604 * 24 22 20 28 28 C 1.53778 * 87.07959 * 334.56485 * 13 12 10 29 29 N 1.31130 * 106.89771 * 359.53935 * 5 4 3 30 30 H 1.09001 * 109.47194 * 269.97326 * 1 2 3 31 31 H 1.08999 * 109.47262 * 29.97357 * 1 2 3 32 32 H 1.08995 * 109.47372 * 149.97211 * 1 2 3 33 33 H 1.09002 * 109.47153 * 59.99773 * 8 6 5 34 34 H 1.09001 * 109.46832 * 299.99964 * 8 6 5 35 35 H 1.09004 * 109.47261 * 179.97438 * 8 6 5 36 36 H 1.00896 * 110.99793 * 328.95900 * 9 6 5 37 37 H 1.09003 * 113.61543 * 254.52732 * 12 10 9 38 38 H 1.08996 * 113.61634 * 25.43145 * 12 10 9 39 39 H 0.97006 * 120.00180 * 287.50187 * 15 13 12 40 40 H 1.09003 * 109.47267 * 300.00064 * 18 16 15 41 41 H 1.09007 * 109.46891 * 60.00215 * 18 16 15 42 42 H 0.96996 * 119.99996 * 179.97438 * 23 22 20 43 43 H 1.09000 * 113.61480 * 270.88563 * 28 13 12 44 44 H 1.09006 * 113.68626 * 139.99503 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 0.0054 5 6 3.5298 -0.6211 -0.0007 6 6 4.7969 -1.4369 -0.0013 7 1 4.5650 -2.4681 -0.2675 8 6 5.4282 -1.3994 1.3919 9 7 5.7385 -0.8784 -0.9808 10 6 6.6807 -1.9035 -1.4492 11 1 6.8022 -2.7223 -0.7401 12 6 6.4182 -2.3686 -2.8912 13 6 7.9441 -2.3782 -3.0823 14 1 8.2663 -2.0012 -4.0531 15 7 8.5715 -3.6545 -2.7310 16 6 9.0412 -4.4641 -3.7007 17 8 8.9440 -4.1363 -4.8643 18 6 9.6871 -5.7768 -3.3392 19 16 10.2094 -6.6282 -4.8486 20 6 10.9103 -8.0864 -4.1506 21 1 10.9162 -8.2231 -3.0792 22 6 11.4547 -9.0591 -4.9775 23 7 11.4479 -8.8922 -6.2831 24 14 12.1971 -10.6054 -4.2375 25 1 11.1477 -11.6490 -4.1161 26 1 13.2879 -11.0999 -5.1155 27 1 12.7458 -10.2963 -2.8926 28 6 8.0123 -1.3287 -1.9604 29 7 2.3030 -1.0841 -0.0005 30 1 -0.3634 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.7296 -1.8139 2.1187 34 1 5.6602 -0.3682 1.6580 35 1 6.3445 -1.9899 1.3916 36 1 5.2473 -0.4578 -1.7553 37 1 5.9640 -3.3574 -2.9552 38 1 5.9062 -1.6261 -3.5031 39 1 8.6490 -3.9170 -1.8003 40 1 10.5555 -5.5924 -2.7066 41 1 8.9710 -6.3982 -2.8013 42 1 11.8287 -9.5718 -6.8610 43 1 7.9360 -0.3018 -2.3180 44 1 8.8446 -1.4766 -1.2724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566782551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = 25.681678 kcal Electronic energy + Delta-G solvation = -25878.202760 eV Core-core repulsion = 21959.733575 eV Total energy + Delta-G solvation = -3918.469184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.71053 -41.27465 -39.62992 -37.43607 -36.95152 -34.58215 -34.43581 -33.19747 -30.97259 -30.10246 -29.90697 -27.65855 -26.64120 -26.02792 -24.57175 -24.03303 -22.15898 -21.64029 -20.52661 -19.82072 -19.25304 -18.54758 -17.98046 -17.19522 -17.09262 -16.86511 -16.69365 -16.33808 -15.92952 -15.58835 -15.14590 -14.88743 -14.64881 -14.52358 -14.49334 -14.00900 -13.96107 -13.74272 -13.42312 -13.34629 -13.25425 -13.15168 -13.11548 -12.88185 -12.64867 -12.57050 -12.43207 -12.43053 -12.16218 -11.72498 -11.71268 -11.36524 -11.13149 -10.99074 -10.93742 -10.25533 -10.05665 -9.54179 -8.65241 -8.33480 -6.11400 0.00669 1.07875 1.28419 1.43508 1.48586 1.58682 1.62116 1.68871 2.26344 2.30761 2.39094 2.93611 3.00848 3.13995 3.33650 3.55037 3.65258 3.74738 3.90711 4.00291 4.06118 4.15907 4.18715 4.33944 4.42830 4.52893 4.53424 4.53573 4.61320 4.78949 4.80234 4.85379 4.89628 4.90991 4.96274 5.04255 5.09820 5.17860 5.30143 5.43280 5.57652 5.89785 6.13835 6.21087 6.54891 7.06335 7.08024 7.29022 8.75671 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023006 B = 0.001679 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.772428 B =16676.545083 C =16944.950387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.161 3.839 3 N -0.409 5.409 4 O 0.082 5.918 5 C 0.186 3.814 6 C 0.182 3.818 7 H 0.100 0.900 8 C -0.139 4.139 9 N -0.664 5.664 10 C 0.080 3.920 11 H 0.121 0.879 12 C -0.179 4.179 13 C 0.109 3.891 14 H 0.078 0.922 15 N -0.693 5.693 16 C 0.536 3.464 17 O -0.567 6.567 18 C -0.129 4.129 19 S -0.155 6.155 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.257 1.257 28 C -0.113 4.113 29 N -0.500 5.500 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.350 0.650 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.418 0.582 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.106 0.894 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.246 18.438 19.857 32.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 N -0.119 5.119 4 O 0.026 5.974 5 C -0.035 4.035 6 C 0.071 3.929 7 H 0.117 0.883 8 C -0.198 4.198 9 N -0.296 5.296 10 C -0.029 4.029 11 H 0.138 0.862 12 C -0.220 4.220 13 C 0.002 3.998 14 H 0.096 0.904 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.445 6.445 18 C -0.280 4.280 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.181 1.181 28 C -0.152 4.152 29 N -0.235 5.235 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.170 0.830 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.602 19.709 18.272 32.127 hybrid contribution 0.084 -1.912 0.786 2.069 sum -17.518 17.797 19.059 31.414 Atomic orbital electron populations 1.20355 0.80549 1.05731 1.05612 1.26630 1.02140 0.82970 0.99451 1.74668 0.89884 1.24724 1.22619 1.85306 1.21918 1.24919 1.65305 1.29307 0.97148 0.82212 0.94797 1.20310 0.81396 0.93939 0.97242 0.88255 1.21895 1.01882 1.04163 0.91827 1.60674 1.19018 1.31611 1.18330 1.23188 0.92730 0.93369 0.93656 0.86154 1.24181 0.96391 1.02470 0.98927 1.21787 0.93479 0.84324 1.00170 0.90407 1.45396 1.60282 1.19360 1.09640 1.20082 0.77199 0.85092 0.85432 1.90694 1.57701 1.75012 1.21095 1.23377 1.04311 0.96716 1.03644 1.85614 1.76795 1.21104 1.09240 1.23215 1.44865 1.05319 0.95941 0.89776 1.26125 0.95785 1.02223 0.95046 1.70184 1.44142 1.36039 1.04459 0.84957 0.77828 0.76764 0.78455 1.19377 1.20419 1.18082 1.23347 0.97455 0.98622 0.95781 1.71944 1.00260 1.30118 1.21197 0.87760 0.88401 0.88066 0.91508 0.91293 0.88708 0.82990 0.91938 0.88572 0.74478 0.87012 0.87081 0.92044 0.87549 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.23 0.75 0.15 16 2 C 0.16 2.81 8.22 138.46 1.14 3.95 16 3 N -0.41 -8.22 12.16 -60.32 -0.73 -8.95 16 4 O 0.08 1.51 11.31 74.79 0.85 2.35 16 5 C 0.19 2.91 7.00 88.38 0.62 3.52 16 6 C 0.18 1.84 3.01 44.17 0.13 1.98 16 7 H 0.10 0.94 7.84 -2.39 -0.02 0.92 16 8 C -0.14 -1.06 9.39 71.98 0.68 -0.38 16 9 N -0.66 -6.45 6.42 -470.64 -3.02 -9.47 16 10 C 0.08 0.78 3.75 45.44 0.17 0.95 16 11 H 0.12 0.83 7.49 -2.39 -0.02 0.82 16 12 C -0.18 -2.74 7.49 31.12 0.23 -2.51 16 13 C 0.11 2.09 4.32 45.52 0.20 2.29 16 14 H 0.08 1.99 7.47 -2.38 -0.02 1.97 16 15 N -0.69 -15.29 5.26 -440.05 -2.32 -17.61 16 16 C 0.54 18.72 7.85 87.66 0.69 19.41 16 17 O -0.57 -25.68 15.46 -3.02 -0.05 -25.73 16 18 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 19 S -0.15 -8.46 20.57 -56.49 -1.16 -9.63 16 20 C -0.55 -30.70 9.50 67.95 0.65 -30.05 16 21 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 22 C 0.01 0.73 5.49 84.86 0.47 1.19 16 23 N -0.91 -55.71 13.22 21.65 0.29 -55.43 16 24 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 28 C -0.11 -1.29 7.63 31.12 0.24 -1.06 16 29 N -0.50 -9.25 11.55 -303.19 -3.50 -12.75 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.09 0.46 7.74 -2.38 -0.02 0.44 16 36 H 0.35 3.70 7.81 -89.70 -0.70 3.00 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.38 7.82 -2.39 -0.02 1.36 16 39 H 0.42 6.02 8.70 -92.70 -0.81 5.21 16 40 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 41 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 42 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -80.22 389.55 -1.70 -81.92 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.47 Total: 15.22 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 6.39 Total: -5.00 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -9.29 Total: -104.21 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.80 Total: -23.38 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -80.22 -1.70 -81.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.597 kcal (2) G-P(sol) polarization free energy of solvation -80.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds