Wall clock time and date at job start Sat Apr 11 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30274 * 126.28334 * 2 1 4 4 N 1.28664 * 109.38204 * 179.73191 * 3 2 1 5 5 C 1.30278 * 109.37936 * 0.44694 * 4 3 2 6 6 C 1.50706 * 126.28004 * 179.82410 * 5 4 3 7 7 H 1.09003 * 109.46772 * 164.69123 * 6 5 4 8 8 C 1.52997 * 109.47106 * 284.69080 * 6 5 4 9 9 N 1.46895 * 109.46958 * 44.69083 * 6 5 4 10 10 C 1.46899 * 110.99736 * 154.99737 * 9 6 5 11 11 H 1.09000 * 112.90940 * 23.75151 * 10 9 6 12 12 C 1.53786 * 113.61541 * 154.99883 * 10 9 6 13 13 C 1.53781 * 87.17350 * 140.02506 * 12 10 9 14 14 H 1.09000 * 113.61379 * 219.89528 * 13 12 10 15 15 N 1.46505 * 113.61334 * 89.07333 * 13 12 10 16 16 C 1.34776 * 119.99597 * 154.99978 * 15 13 12 17 17 O 1.21275 * 120.00338 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99715 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46853 * 180.02562 * 18 16 15 20 20 C 1.76209 * 99.99568 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31639 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99964 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46996 * 60.00217 * 24 22 20 26 26 H 1.48500 * 109.47176 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47309 * 300.00105 * 24 22 20 28 28 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 29 29 O 1.34354 * 107.43402 * 359.56352 * 5 4 3 30 30 H 1.09001 * 109.47279 * 269.99222 * 1 2 3 31 31 H 1.09003 * 109.47368 * 29.99398 * 1 2 3 32 32 H 1.09002 * 109.47139 * 149.99239 * 1 2 3 33 33 H 1.08997 * 109.47529 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47164 * 300.00421 * 8 6 5 35 35 H 1.09003 * 109.47270 * 60.00348 * 8 6 5 36 36 H 1.00902 * 111.00345 * 278.94922 * 9 6 5 37 37 H 1.09002 * 113.61357 * 25.43422 * 12 10 9 38 38 H 1.09002 * 113.61608 * 254.61584 * 12 10 9 39 39 H 0.96995 * 120.00170 * 335.00476 * 15 13 12 40 40 H 1.09000 * 109.46532 * 299.99611 * 18 16 15 41 41 H 1.08993 * 109.47264 * 60.00029 * 18 16 15 42 42 H 0.96996 * 119.99805 * 179.97438 * 23 22 20 43 43 H 1.09005 * 113.61471 * 139.98321 * 28 13 12 44 44 H 1.08996 * 113.61178 * 270.79663 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5653 -0.6255 -0.0001 6 6 4.8177 -1.4638 -0.0002 7 1 4.5673 -2.4909 0.2657 8 6 5.4491 -1.4372 -1.3935 9 7 5.7693 -0.9225 0.9791 10 6 6.6932 -1.9645 1.4469 11 1 6.7998 -2.7861 0.7386 12 6 8.0350 -1.4138 1.9580 13 6 7.9511 -2.4623 3.0798 14 1 8.2818 -2.0912 4.0499 15 7 8.5556 -3.7492 2.7268 16 6 9.0133 -4.5670 3.6954 17 8 8.9242 -4.2378 4.8592 18 6 9.6357 -5.8906 3.3322 19 16 10.1463 -6.7512 4.8404 20 6 10.8190 -8.2218 4.1406 21 1 10.8198 -8.3587 3.0694 22 6 11.3479 -9.2042 4.9662 23 7 11.3465 -9.0376 6.2720 24 14 12.0603 -10.7636 4.2245 25 1 13.1841 -10.4125 3.3193 26 1 12.5563 -11.6466 5.3106 27 1 11.0066 -11.4715 3.4540 28 6 6.4252 -2.4263 2.8919 29 8 2.3021 -1.0831 -0.0001 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3633 -0.8899 -0.5140 33 1 6.3551 -2.0432 -1.3936 34 1 4.7429 -1.8388 -2.1202 35 1 5.6995 -0.4102 -1.6594 36 1 6.2741 -0.1369 0.5968 37 1 7.9773 -0.3858 2.3158 38 1 8.8644 -1.5764 1.2696 39 1 8.6266 -4.0127 1.7960 40 1 8.9078 -6.4993 2.7958 41 1 10.5056 -5.7212 2.6979 42 1 11.7158 -9.7243 6.8490 43 1 5.9540 -3.4071 2.9567 44 1 5.9273 -1.6762 3.5062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566782640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:34 Heat of formation + Delta-G solvation = 23.598099 kcal Electronic energy + Delta-G solvation = -25829.120400 eV Core-core repulsion = 21910.560865 eV Total energy + Delta-G solvation = -3918.559535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.54959 -40.27974 -38.47783 -36.56740 -36.44001 -33.37342 -32.66225 -32.44265 -30.14561 -28.80565 -28.38110 -26.01492 -25.52399 -25.11484 -23.74333 -22.82934 -21.73508 -20.87969 -19.52635 -17.89257 -17.84348 -17.56671 -16.75575 -16.29590 -16.10816 -15.80834 -15.14797 -14.91024 -14.82923 -14.82064 -14.36385 -14.09325 -13.84580 -13.61360 -13.40320 -13.17715 -12.98297 -12.79057 -12.69145 -12.62036 -12.53450 -12.24643 -12.12412 -11.92751 -11.74939 -11.23006 -11.06691 -11.05610 -10.84246 -10.78078 -10.72287 -9.84987 -9.83107 -9.44325 -9.10570 -9.07226 -8.86712 -8.26212 -6.52053 -6.23196 -3.94148 0.78971 1.77795 2.06623 2.98066 3.03254 3.21874 3.25904 3.28856 3.36705 3.63285 3.67359 4.01996 4.13574 4.18700 4.26665 4.30125 4.40397 4.64537 4.71250 4.74684 4.75576 4.83820 4.90664 5.05742 5.09972 5.10082 5.11854 5.24124 5.34592 5.36748 5.48405 5.51069 5.54732 5.63748 5.77279 5.85042 5.89164 5.98334 6.10230 6.41091 6.69576 6.80559 7.57308 7.66107 7.98848 8.33107 8.57770 9.21875 10.84130 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.001679 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.033256 B =16673.362010 C =16955.594417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.157 3.843 3 N -0.290 5.290 4 N -0.273 5.273 5 C 0.178 3.822 6 C 0.182 3.818 7 H 0.110 0.890 8 C -0.179 4.179 9 N -0.664 5.664 10 C 0.059 3.941 11 H 0.080 0.920 12 C -0.147 4.147 13 C 0.125 3.875 14 H 0.107 0.893 15 N -0.723 5.723 16 C 0.534 3.466 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.138 4.138 29 O -0.226 6.226 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.357 0.643 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.070 0.930 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 17.444 -18.056 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.054 4.054 3 N -0.138 5.138 4 N -0.120 5.120 5 C -0.034 4.034 6 C 0.069 3.931 7 H 0.128 0.872 8 C -0.238 4.238 9 N -0.297 5.297 10 C -0.050 4.050 11 H 0.098 0.902 12 C -0.185 4.185 13 C 0.018 3.982 14 H 0.125 0.875 15 N -0.376 5.376 16 C 0.321 3.679 17 O -0.387 6.387 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 C -0.178 4.178 29 O -0.105 6.105 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.178 0.822 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.953 19.086 -15.370 30.378 hybrid contribution 0.654 -2.800 -3.064 4.201 sum -17.299 16.286 -18.434 30.071 Atomic orbital electron populations 1.20354 0.80225 1.05637 1.05353 1.28026 0.97837 0.79675 0.99874 1.74416 0.96213 1.25638 1.17523 1.74318 1.11872 1.09154 1.16606 1.27856 0.84863 0.91630 0.99038 1.19797 0.84551 0.95836 0.92883 0.87165 1.22520 1.01865 1.03944 0.95481 1.60270 1.19900 1.10009 1.39492 1.23271 0.91535 0.93606 0.96582 0.90229 1.23602 0.96304 1.00202 0.98424 1.21588 0.93330 0.83829 0.99433 0.87490 1.45725 1.63333 1.18859 1.09705 1.20329 0.76964 0.85260 0.85385 1.90706 1.54759 1.74510 1.18772 1.23536 1.03051 0.96203 1.07649 1.85422 1.77269 1.17857 1.02687 1.22826 1.46074 1.04278 0.95359 0.90984 1.24991 0.95384 0.98469 0.94703 1.70008 1.42998 1.34512 1.02713 0.86225 0.79260 0.81366 0.78647 1.19940 1.20790 1.19965 1.23628 0.96690 1.02106 0.95403 1.84764 1.17513 1.38471 1.69748 0.88230 0.87560 0.88915 0.90283 0.91291 0.90913 0.82194 0.87947 0.90584 0.76948 0.89244 0.89200 0.92103 0.91077 0.88460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.16 1.36 8.48 -12.94 -0.11 1.25 16 3 N -0.29 -3.35 12.22 32.55 0.40 -2.96 16 4 N -0.27 -3.21 12.22 32.55 0.40 -2.82 16 5 C 0.18 1.73 7.32 -12.94 -0.09 1.64 16 6 C 0.18 1.25 2.98 -68.87 -0.21 1.05 16 7 H 0.11 0.70 7.84 -51.93 -0.41 0.29 16 8 C -0.18 -0.90 9.13 37.16 0.34 -0.56 16 9 N -0.66 -4.80 6.29 -99.95 -0.63 -5.43 16 10 C 0.06 0.41 3.72 -66.76 -0.25 0.16 16 11 H 0.08 0.47 7.49 -51.93 -0.39 0.08 16 12 C -0.15 -1.06 7.39 -25.92 -0.19 -1.25 16 13 C 0.13 1.35 4.32 -67.11 -0.29 1.06 16 14 H 0.11 1.41 7.46 -51.93 -0.39 1.02 16 15 N -0.72 -8.86 5.26 -53.01 -0.28 -9.14 16 16 C 0.53 9.58 7.85 -10.98 -0.09 9.49 16 17 O -0.51 -11.43 15.46 5.56 0.09 -11.35 16 18 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 20 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.98 13.22 55.49 0.73 -25.24 16 24 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.14 -1.34 7.69 -25.78 -0.20 -1.54 16 29 O -0.23 -2.16 10.87 5.41 0.06 -2.10 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.30 7.74 -51.93 -0.40 -0.10 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 36 H 0.36 2.36 8.29 -39.29 -0.33 2.04 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.40 3.63 8.70 -40.82 -0.36 3.28 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -36.96 390.74 -7.33 -44.29 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -6.46 Total: 0.61 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.29 Total: -4.14 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.62 Total: -45.58 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.14 Total: -13.45 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.96 -7.33 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.887 kcal (2) G-P(sol) polarization free energy of solvation -36.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds