Wall clock time and date at job start Sat Apr 11 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30274 * 126.28334 * 2 1 4 4 N 1.28664 * 109.38204 * 179.73191 * 3 2 1 5 5 C 1.30278 * 109.37936 * 0.44694 * 4 3 2 6 6 C 1.50706 * 126.28004 * 179.82410 * 5 4 3 7 7 H 1.09003 * 109.46772 * 164.69123 * 6 5 4 8 8 C 1.52997 * 109.47106 * 284.69080 * 6 5 4 9 9 N 1.46895 * 109.46958 * 44.69083 * 6 5 4 10 10 C 1.46899 * 110.99736 * 154.99737 * 9 6 5 11 11 H 1.09000 * 112.90940 * 23.75151 * 10 9 6 12 12 C 1.53786 * 113.61541 * 154.99883 * 10 9 6 13 13 C 1.53781 * 87.17350 * 140.02506 * 12 10 9 14 14 H 1.09000 * 113.61379 * 219.89528 * 13 12 10 15 15 N 1.46505 * 113.61334 * 89.07333 * 13 12 10 16 16 C 1.34776 * 119.99597 * 154.99978 * 15 13 12 17 17 O 1.21275 * 120.00338 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99715 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46853 * 180.02562 * 18 16 15 20 20 C 1.76209 * 99.99568 * 179.97438 * 19 18 16 21 21 H 1.07992 * 120.00118 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99631 * 179.97438 * 20 19 18 23 23 N 1.31639 * 120.00205 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99964 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46996 * 60.00217 * 24 22 20 26 26 H 1.48500 * 109.47176 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47309 * 300.00105 * 24 22 20 28 28 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 29 29 O 1.34354 * 107.43402 * 359.56352 * 5 4 3 30 30 H 1.09001 * 109.47279 * 269.99222 * 1 2 3 31 31 H 1.09003 * 109.47368 * 29.99398 * 1 2 3 32 32 H 1.09002 * 109.47139 * 149.99239 * 1 2 3 33 33 H 1.08997 * 109.47529 * 179.97438 * 8 6 5 34 34 H 1.09001 * 109.47164 * 300.00421 * 8 6 5 35 35 H 1.09003 * 109.47270 * 60.00348 * 8 6 5 36 36 H 1.00902 * 111.00345 * 278.94922 * 9 6 5 37 37 H 1.09002 * 113.61357 * 25.43422 * 12 10 9 38 38 H 1.09002 * 113.61608 * 254.61584 * 12 10 9 39 39 H 0.96995 * 120.00170 * 335.00476 * 15 13 12 40 40 H 1.09000 * 109.46532 * 299.99611 * 18 16 15 41 41 H 1.08993 * 109.47264 * 60.00029 * 18 16 15 42 42 H 0.96996 * 119.99805 * 179.97438 * 23 22 20 43 43 H 1.09005 * 113.61471 * 139.98321 * 28 13 12 44 44 H 1.08996 * 113.61178 * 270.79663 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 0.0057 5 6 3.5653 -0.6255 -0.0001 6 6 4.8177 -1.4638 -0.0002 7 1 4.5673 -2.4909 0.2657 8 6 5.4491 -1.4372 -1.3935 9 7 5.7693 -0.9225 0.9791 10 6 6.6932 -1.9645 1.4469 11 1 6.7998 -2.7861 0.7386 12 6 8.0350 -1.4138 1.9580 13 6 7.9511 -2.4623 3.0798 14 1 8.2818 -2.0912 4.0499 15 7 8.5556 -3.7492 2.7268 16 6 9.0133 -4.5670 3.6954 17 8 8.9242 -4.2378 4.8592 18 6 9.6357 -5.8906 3.3322 19 16 10.1463 -6.7512 4.8404 20 6 10.8190 -8.2218 4.1406 21 1 10.8198 -8.3587 3.0694 22 6 11.3479 -9.2042 4.9662 23 7 11.3465 -9.0376 6.2720 24 14 12.0603 -10.7636 4.2245 25 1 13.1841 -10.4125 3.3193 26 1 12.5563 -11.6466 5.3106 27 1 11.0066 -11.4715 3.4540 28 6 6.4252 -2.4263 2.8919 29 8 2.3021 -1.0831 -0.0001 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3633 -0.8899 -0.5140 33 1 6.3551 -2.0432 -1.3936 34 1 4.7429 -1.8388 -2.1202 35 1 5.6995 -0.4102 -1.6594 36 1 6.2741 -0.1369 0.5968 37 1 7.9773 -0.3858 2.3158 38 1 8.8644 -1.5764 1.2696 39 1 8.6266 -4.0127 1.7960 40 1 8.9078 -6.4993 2.7958 41 1 10.5056 -5.7212 2.6979 42 1 11.7158 -9.7243 6.8490 43 1 5.9540 -3.4071 2.9567 44 1 5.9273 -1.6762 3.5062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566782640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:33 Heat of formation + Delta-G solvation = -8.776138 kcal Electronic energy + Delta-G solvation = -25830.524252 eV Core-core repulsion = 21910.560865 eV Total energy + Delta-G solvation = -3919.963388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.24211 -41.25558 -39.60605 -37.29060 -37.15859 -34.57875 -34.36652 -33.37206 -31.05765 -29.95218 -28.88510 -27.65709 -26.71803 -25.75008 -24.53153 -23.47990 -22.33885 -22.13061 -20.41607 -19.82188 -18.54025 -18.26783 -17.95719 -17.16804 -16.92844 -16.86627 -16.75371 -16.33185 -15.90487 -15.58027 -15.40014 -15.13476 -14.64118 -14.55271 -14.24234 -13.99947 -13.87721 -13.65558 -13.47436 -13.33710 -13.31350 -13.15924 -13.04510 -12.91455 -12.84999 -12.72732 -12.61724 -12.46288 -11.89349 -11.74864 -11.55236 -11.49987 -11.11755 -10.94700 -10.51157 -10.26097 -10.06778 -9.57230 -8.65589 -8.33375 -6.11607 0.14341 1.19012 1.27810 1.35650 1.44725 1.47965 1.57335 1.61555 2.25437 2.29985 2.83628 3.00721 3.07522 3.33270 3.47820 3.49945 3.58554 3.75940 3.88302 3.95445 4.00579 4.10198 4.20458 4.33348 4.36212 4.40403 4.52452 4.53054 4.55425 4.72472 4.74577 4.78356 4.86333 4.87748 4.99131 5.04572 5.07076 5.12717 5.14094 5.42705 5.56399 5.93506 6.20670 6.29240 6.53721 7.07800 7.28059 7.28242 8.75500 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022520 B = 0.001679 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.033256 B =16673.362010 C =16955.594417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.164 3.836 3 N -0.332 5.332 4 N -0.304 5.304 5 C 0.175 3.825 6 C 0.183 3.817 7 H 0.119 0.881 8 C -0.171 4.171 9 N -0.673 5.673 10 C 0.077 3.923 11 H 0.102 0.898 12 C -0.127 4.127 13 C 0.110 3.890 14 H 0.078 0.922 15 N -0.693 5.693 16 C 0.536 3.464 17 O -0.567 6.567 18 C -0.129 4.129 19 S -0.155 6.155 20 C -0.547 4.547 21 H 0.084 0.916 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.262 1.262 28 C -0.141 4.141 29 O -0.234 6.234 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.362 0.638 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.232 16.885 -21.337 32.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 N -0.179 5.179 4 N -0.149 5.149 5 C -0.038 4.038 6 C 0.071 3.929 7 H 0.137 0.863 8 C -0.230 4.230 9 N -0.307 5.307 10 C -0.032 4.032 11 H 0.120 0.880 12 C -0.165 4.165 13 C 0.004 3.996 14 H 0.096 0.904 15 N -0.347 5.347 16 C 0.322 3.678 17 O -0.445 6.445 18 C -0.280 4.280 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 C -0.180 4.180 29 O -0.114 6.114 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.255 0.745 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.397 18.579 -18.724 32.159 hybrid contribution 0.653 -2.500 -2.068 3.310 sum -17.744 16.079 -20.792 31.712 Atomic orbital electron populations 1.20693 0.76816 1.07307 1.06752 1.29019 0.99392 0.78876 0.97464 1.74341 0.96652 1.27125 1.19779 1.74226 1.12409 1.10319 1.17986 1.28449 0.85667 0.91495 0.98160 1.19974 0.83510 0.95500 0.93915 0.86346 1.22474 1.02481 1.03989 0.94087 1.60114 1.20121 1.10318 1.40176 1.23136 0.90838 0.94003 0.95175 0.87993 1.23500 0.97129 0.99136 0.96757 1.21736 0.94151 0.83869 0.99851 0.90382 1.45386 1.61268 1.18349 1.09655 1.20093 0.77022 0.85275 0.85425 1.90698 1.57210 1.75478 1.21071 1.23370 1.04477 0.96479 1.03664 1.85633 1.78131 1.19728 1.09257 1.23182 1.45912 1.04386 0.95953 0.89758 1.26133 0.95619 1.02380 0.95049 1.70185 1.44248 1.35883 1.04493 0.85006 0.78776 0.76369 0.77859 1.18601 1.20546 1.18634 1.23598 0.95297 1.01424 0.97727 1.84787 1.17690 1.38855 1.70030 0.86735 0.86285 0.86777 0.88320 0.91063 0.91538 0.81582 0.87348 0.88548 0.74509 0.87057 0.86984 0.92040 0.92220 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 71.24 0.75 0.46 16 2 C 0.16 2.71 8.48 88.34 0.75 3.46 16 3 N -0.33 -7.67 12.22 -165.50 -2.02 -9.70 16 4 N -0.30 -7.12 12.22 -165.50 -2.02 -9.14 16 5 C 0.18 3.26 7.32 88.34 0.65 3.90 16 6 C 0.18 2.16 2.98 44.17 0.13 2.29 16 7 H 0.12 1.20 7.84 -2.39 -0.02 1.18 16 8 C -0.17 -1.27 9.13 71.98 0.66 -0.61 16 9 N -0.67 -8.34 6.29 -470.14 -2.96 -11.30 16 10 C 0.08 0.86 3.72 45.53 0.17 1.03 16 11 H 0.10 0.75 7.49 -2.39 -0.02 0.73 16 12 C -0.13 -1.49 7.39 31.12 0.23 -1.26 16 13 C 0.11 2.26 4.32 45.52 0.20 2.45 16 14 H 0.08 2.11 7.46 -2.39 -0.02 2.09 16 15 N -0.69 -15.61 5.26 -440.03 -2.32 -17.92 16 16 C 0.54 18.93 7.85 87.66 0.69 19.61 16 17 O -0.57 -25.99 15.46 -3.01 -0.05 -26.04 16 18 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 19 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 20 C -0.55 -30.76 9.50 67.95 0.65 -30.11 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 24 Si 1.00 42.99 29.55 68.60 2.03 45.01 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 28 C -0.14 -2.58 7.69 31.21 0.24 -2.34 16 29 O -0.23 -4.25 10.87 -3.56 -0.04 -4.29 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.10 0.36 7.74 -2.39 -0.02 0.34 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.60 8.13 -2.39 -0.02 0.58 16 36 H 0.36 4.01 8.29 -89.69 -0.74 3.27 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.42 6.08 8.70 -92.71 -0.81 5.27 16 40 H 0.11 3.73 8.14 -2.40 -0.02 3.72 16 41 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -85.08 390.74 -2.75 -87.84 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.51 Total: 15.02 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.01 Total: -4.35 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -9.03 Total: -103.55 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.09 Total: -30.33 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -85.08 -2.75 -87.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566782640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.060 kcal (2) G-P(sol) polarization free energy of solvation -85.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds