Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.50700 * 109.47012 * 179.97438 * 3 2 1 5 5 N 1.31128 * 126.55377 * 90.25056 * 4 3 2 6 6 C 1.34491 * 105.61606 * 180.12506 * 5 4 3 7 7 C 1.50706 * 126.28560 * 179.90481 * 6 5 4 8 8 N 1.46894 * 109.47039 * 269.70570 * 7 6 5 9 9 C 1.47967 * 111.00177 * 189.99897 * 8 7 6 10 10 C 1.53934 * 86.18229 * 222.42116 * 9 8 7 11 11 N 1.46499 * 113.73431 * 269.25860 * 10 9 8 12 12 C 1.34779 * 119.99839 * 203.10356 * 11 10 9 13 13 O 1.21274 * 119.99971 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99851 * 179.97438 * 12 11 10 15 15 S 1.80994 * 109.47058 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00183 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99546 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00277 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46911 * 60.00790 * 20 18 16 22 22 H 1.48501 * 109.46888 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47463 * 300.00475 * 20 18 16 24 24 C 1.48193 * 111.06841 * 90.57145 * 8 7 6 25 25 N 1.29948 * 107.42633 * 359.63816 * 6 5 4 26 26 O 1.21297 * 110.24998 * 0.22826 * 25 6 5 27 27 H 1.08997 * 109.47585 * 300.00767 * 1 2 3 28 28 H 1.09006 * 109.46658 * 60.00468 * 1 2 3 29 29 H 1.08998 * 109.47711 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47060 * 239.99222 * 2 1 3 31 31 H 1.09002 * 109.46229 * 119.99719 * 2 1 3 32 32 H 1.08992 * 109.47398 * 59.99899 * 3 2 1 33 33 H 1.08999 * 109.46961 * 299.99738 * 3 2 1 34 34 H 1.09001 * 109.46897 * 149.71157 * 7 6 5 35 35 H 1.08997 * 109.47189 * 29.71462 * 7 6 5 36 36 H 1.09001 * 113.75575 * 108.09971 * 9 8 7 37 37 H 1.08993 * 113.75515 * 336.74204 * 9 8 7 38 38 H 1.09002 * 113.73279 * 138.08098 * 10 9 8 39 39 H 0.96999 * 120.00392 * 23.09543 * 11 10 9 40 40 H 1.09004 * 109.46849 * 299.99813 * 14 12 11 41 41 H 1.08997 * 109.47278 * 59.99801 * 14 12 11 42 42 H 0.96991 * 120.00333 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.75997 * 23.23547 * 24 8 7 44 44 H 1.09002 * 113.81982 * 251.81037 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3284 1.4468 -1.0524 6 6 5.5843 1.4419 -0.5713 7 6 6.8518 1.4422 -1.3866 8 7 7.2641 0.0573 -1.6510 9 6 8.6212 0.0111 -2.2388 10 6 8.0595 -1.0576 -3.1937 11 7 8.2045 -2.4278 -2.6960 12 6 8.2048 -3.4622 -3.5601 13 8 8.0846 -3.2586 -4.7496 14 6 8.3546 -4.8716 -3.0482 15 16 8.3163 -6.0267 -4.4412 16 6 8.5065 -7.5518 -3.5794 17 1 8.6022 -7.5558 -2.5037 18 6 8.5322 -8.7479 -4.2829 19 7 8.4150 -8.7431 -5.5940 20 14 8.7345 -10.3647 -3.3693 21 1 7.6124 -10.5358 -2.4117 22 1 8.7311 -11.4867 -4.3421 23 1 10.0212 -10.3568 -2.6279 24 6 6.6765 -0.4410 -2.9169 25 7 5.5042 1.4427 0.7257 26 8 4.3425 1.4430 1.0746 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 7.6386 1.9564 -0.8348 35 1 6.6757 1.9557 -2.3318 36 1 9.3827 -0.3663 -1.5563 37 1 8.9154 0.9346 -2.7374 38 1 8.3925 -0.9429 -4.2253 39 1 8.3004 -2.5907 -1.7446 40 1 9.3042 -4.9680 -2.5218 41 1 7.5360 -5.0991 -2.3655 42 1 8.4333 -9.5789 -6.0857 43 1 6.4007 0.3499 -3.6143 44 1 5.8870 -1.1791 -2.7752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567783360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = 61.040080 kcal Electronic energy + Delta-G solvation = -25915.114152 eV Core-core repulsion = 21998.178223 eV Total energy + Delta-G solvation = -3916.935929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.87095 -40.61556 -38.54544 -36.54594 -35.83470 -33.80086 -32.59419 -32.41827 -30.47265 -28.74549 -28.13951 -26.47713 -25.55931 -25.20084 -23.76018 -22.53186 -21.32478 -20.86148 -19.81015 -18.37647 -17.95948 -17.72215 -16.65056 -16.37976 -16.01059 -15.79571 -15.67099 -15.09411 -14.95469 -14.79342 -14.64138 -14.00759 -13.97046 -13.35678 -13.21387 -13.12871 -12.90747 -12.61689 -12.51032 -12.36323 -12.22112 -12.08576 -11.90960 -11.82614 -11.35471 -11.33051 -11.25203 -11.17327 -11.03465 -11.02902 -10.75595 -10.16816 -9.81656 -9.45540 -9.27708 -9.05461 -8.89880 -8.23720 -6.49293 -6.20710 -3.91341 0.85184 1.88089 2.47956 2.97989 3.03161 3.19736 3.24459 3.27753 3.30800 3.56940 3.66111 3.79485 4.21392 4.32666 4.36768 4.40725 4.42646 4.48334 4.74206 4.79763 4.98498 5.02562 5.04010 5.08987 5.11743 5.14334 5.17669 5.22449 5.33542 5.41849 5.52220 5.56617 5.60045 5.64025 5.69561 5.76859 5.83942 5.89506 5.90458 6.15661 6.48152 6.65337 7.60349 7.71649 7.89366 8.36079 8.59313 9.24503 10.86674 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.002082 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.284074 B =13445.647618 C =14952.490080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.026 4.026 4 C 0.179 3.821 5 N -0.476 5.476 6 C 0.184 3.816 7 C 0.110 3.890 8 N -0.477 5.477 9 C -0.001 4.001 10 C 0.124 3.876 11 N -0.715 5.715 12 C 0.535 3.465 13 O -0.517 6.517 14 C -0.153 4.153 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.006 4.006 25 N -0.372 5.372 26 O 0.077 5.923 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.404 0.596 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.083 0.917 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 25.106 12.985 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.065 4.065 4 C -0.042 4.042 5 N -0.210 5.210 6 C -0.090 4.090 7 C -0.020 4.020 8 N -0.201 5.201 9 C -0.130 4.130 10 C 0.016 3.984 11 N -0.368 5.368 12 C 0.321 3.679 13 O -0.391 6.391 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.136 4.136 25 N -0.079 5.079 26 O 0.018 5.982 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.238 0.762 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.031 25.021 11.526 29.317 hybrid contribution 0.249 -0.766 1.880 2.045 sum -9.781 24.255 13.406 29.389 Atomic orbital electron populations 1.21746 0.94184 1.02681 1.02221 1.21557 0.96922 0.94042 1.03697 1.20329 0.80023 1.00264 1.05909 1.28839 0.98643 0.95946 0.80745 1.71877 1.00227 1.19954 1.28928 1.25508 0.94805 1.00487 0.88188 1.20873 0.89928 0.93165 0.98032 1.68558 1.04462 1.16582 1.30455 1.24386 0.92770 0.98903 0.96970 1.22135 0.94849 0.82263 0.99124 1.45634 1.76131 1.04447 1.10637 1.20361 0.74935 0.86265 0.86290 1.90696 1.47322 1.85212 1.15856 1.23527 1.04925 0.95202 1.06696 1.85373 1.95602 0.96921 1.05380 1.22829 1.58130 0.92014 0.95424 0.90970 1.24991 0.94585 0.99004 0.94997 1.70006 1.46602 1.27786 1.05933 0.86224 0.78867 0.81236 0.79173 1.19939 1.20811 1.19934 1.24649 0.99014 0.99990 0.89939 1.74635 0.97182 1.20344 1.15789 1.85302 1.11510 1.65565 1.35850 0.92274 0.92201 0.91850 0.90752 0.91061 0.88026 0.87223 0.88128 0.90297 0.88229 0.89587 0.87309 0.76155 0.89129 0.89172 0.92132 0.89852 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 3 C -0.03 -0.13 5.84 -27.89 -0.16 -0.29 16 4 C 0.18 1.59 7.77 -13.06 -0.10 1.49 16 5 N -0.48 -5.24 11.55 -9.87 -0.11 -5.36 16 6 C 0.18 2.08 7.78 -156.37 -1.22 0.86 16 7 C 0.11 1.00 5.42 -4.98 -0.03 0.97 16 8 N -0.48 -4.81 6.14 -239.65 -1.47 -6.28 16 9 C 0.00 -0.01 7.69 -2.76 -0.02 -0.03 16 10 C 0.12 1.42 4.39 -69.62 -0.31 1.12 16 11 N -0.72 -9.77 5.37 -54.94 -0.30 -10.07 16 12 C 0.53 9.97 7.85 -10.98 -0.09 9.88 16 13 O -0.52 -11.59 15.48 5.56 0.09 -11.50 16 14 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 17 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 20 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.01 -0.07 7.77 -2.63 -0.02 -0.09 16 25 N -0.37 -4.51 12.16 30.90 0.38 -4.14 16 26 O 0.08 0.81 11.31 18.08 0.20 1.01 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.08 0.61 7.39 -51.93 -0.38 0.23 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.53 7.92 -51.93 -0.41 0.12 16 38 H 0.11 1.37 7.51 -51.93 -0.39 0.98 16 39 H 0.40 4.74 8.74 -40.82 -0.36 4.38 16 40 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 0.80 7.49 -51.93 -0.39 0.41 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -36.21 390.98 -9.68 -45.89 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.54 Total: 0.45 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.31 Total: -3.05 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.77 Total: -51.37 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.29 Total: -10.49 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.21 -9.68 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567783360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.931 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds