Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.50700 * 109.47012 * 179.97438 * 3 2 1 5 5 N 1.31128 * 126.55377 * 90.25056 * 4 3 2 6 6 C 1.34491 * 105.61606 * 180.12506 * 5 4 3 7 7 C 1.50706 * 126.28560 * 179.90481 * 6 5 4 8 8 N 1.46894 * 109.47039 * 269.70570 * 7 6 5 9 9 C 1.47967 * 111.00177 * 189.99897 * 8 7 6 10 10 C 1.53934 * 86.18229 * 222.42116 * 9 8 7 11 11 N 1.46499 * 113.73431 * 269.25860 * 10 9 8 12 12 C 1.34779 * 119.99839 * 203.10356 * 11 10 9 13 13 O 1.21274 * 119.99971 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99851 * 179.97438 * 12 11 10 15 15 S 1.80994 * 109.47058 * 179.97438 * 14 12 11 16 16 C 1.76199 * 100.00183 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99546 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00277 * 179.97438 * 16 15 14 19 19 N 1.31635 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99976 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46911 * 60.00790 * 20 18 16 22 22 H 1.48501 * 109.46888 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47463 * 300.00475 * 20 18 16 24 24 C 1.48193 * 111.06841 * 90.57145 * 8 7 6 25 25 N 1.29948 * 107.42633 * 359.63816 * 6 5 4 26 26 O 1.21297 * 110.24998 * 0.22826 * 25 6 5 27 27 H 1.08997 * 109.47585 * 300.00767 * 1 2 3 28 28 H 1.09006 * 109.46658 * 60.00468 * 1 2 3 29 29 H 1.08998 * 109.47711 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47060 * 239.99222 * 2 1 3 31 31 H 1.09002 * 109.46229 * 119.99719 * 2 1 3 32 32 H 1.08992 * 109.47398 * 59.99899 * 3 2 1 33 33 H 1.08999 * 109.46961 * 299.99738 * 3 2 1 34 34 H 1.09001 * 109.46897 * 149.71157 * 7 6 5 35 35 H 1.08997 * 109.47189 * 29.71462 * 7 6 5 36 36 H 1.09001 * 113.75575 * 108.09971 * 9 8 7 37 37 H 1.08993 * 113.75515 * 336.74204 * 9 8 7 38 38 H 1.09002 * 113.73279 * 138.08098 * 10 9 8 39 39 H 0.96999 * 120.00392 * 23.09543 * 11 10 9 40 40 H 1.09004 * 109.46849 * 299.99813 * 14 12 11 41 41 H 1.08997 * 109.47278 * 59.99801 * 14 12 11 42 42 H 0.96991 * 120.00333 * 179.97438 * 19 18 16 43 43 H 1.09000 * 113.75997 * 23.23547 * 24 8 7 44 44 H 1.09002 * 113.81982 * 251.81037 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3284 1.4468 -1.0524 6 6 5.5843 1.4419 -0.5713 7 6 6.8518 1.4422 -1.3866 8 7 7.2641 0.0573 -1.6510 9 6 8.6212 0.0111 -2.2388 10 6 8.0595 -1.0576 -3.1937 11 7 8.2045 -2.4278 -2.6960 12 6 8.2048 -3.4622 -3.5601 13 8 8.0846 -3.2586 -4.7496 14 6 8.3546 -4.8716 -3.0482 15 16 8.3163 -6.0267 -4.4412 16 6 8.5065 -7.5518 -3.5794 17 1 8.6022 -7.5558 -2.5037 18 6 8.5322 -8.7479 -4.2829 19 7 8.4150 -8.7431 -5.5940 20 14 8.7345 -10.3647 -3.3693 21 1 7.6124 -10.5358 -2.4117 22 1 8.7311 -11.4867 -4.3421 23 1 10.0212 -10.3568 -2.6279 24 6 6.6765 -0.4410 -2.9169 25 7 5.5042 1.4427 0.7257 26 8 4.3425 1.4430 1.0746 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 7.6386 1.9564 -0.8348 35 1 6.6757 1.9557 -2.3318 36 1 9.3827 -0.3663 -1.5563 37 1 8.9154 0.9346 -2.7374 38 1 8.3925 -0.9429 -4.2253 39 1 8.3004 -2.5907 -1.7446 40 1 9.3042 -4.9680 -2.5218 41 1 7.5360 -5.0991 -2.3655 42 1 8.4333 -9.5789 -6.0857 43 1 6.4007 0.3499 -3.6143 44 1 5.8870 -1.1791 -2.7752 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567783360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = 31.881566 kcal Electronic energy + Delta-G solvation = -25916.378560 eV Core-core repulsion = 21998.178223 eV Total energy + Delta-G solvation = -3918.200337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.64611 -41.58330 -39.89609 -37.22618 -36.44716 -34.97655 -34.58730 -33.34382 -31.59238 -30.03377 -28.63544 -27.68223 -27.25940 -26.15222 -24.48749 -23.08365 -22.18384 -21.93406 -20.82928 -19.84331 -19.16222 -18.61046 -17.98782 -17.42065 -16.89068 -16.87315 -16.62699 -16.33834 -16.26352 -16.07239 -15.58814 -15.48518 -14.74168 -14.52687 -14.37212 -14.03042 -13.90559 -13.75479 -13.46370 -13.17912 -13.09272 -12.99443 -12.87609 -12.81376 -12.68580 -12.62186 -12.38843 -12.20536 -12.09173 -11.96884 -11.73238 -11.64899 -11.13600 -11.01019 -10.91666 -10.29898 -10.19742 -9.95797 -8.67451 -8.35143 -6.13366 0.11975 1.11215 1.25165 1.43385 1.45320 1.55005 1.55768 1.84391 2.19519 2.27240 2.51632 2.88559 2.97748 2.98716 3.30409 3.47221 3.68883 3.81455 3.93121 3.96460 3.99286 4.06493 4.21312 4.27935 4.34770 4.39614 4.48898 4.48980 4.57793 4.63586 4.68241 4.74053 4.77218 4.80635 4.88594 4.94740 5.13043 5.21591 5.24757 5.40937 5.43433 5.47613 5.76287 6.19044 6.46525 7.05923 7.13952 7.20175 8.73829 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.002082 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.284074 B =13445.647618 C =14952.490080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.023 4.023 4 C 0.187 3.813 5 N -0.502 5.502 6 C 0.175 3.825 7 C 0.110 3.890 8 N -0.489 5.489 9 C 0.019 3.981 10 C 0.110 3.890 11 N -0.692 5.692 12 C 0.539 3.461 13 O -0.561 6.561 14 C -0.130 4.130 15 S -0.147 6.147 16 C -0.548 4.548 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.910 5.910 20 Si 0.998 3.002 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.262 1.262 24 C 0.000 4.000 25 N -0.398 5.398 26 O 0.070 5.930 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.272 0.728 43 H 0.098 0.902 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 26.234 15.206 32.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.062 4.062 4 C -0.033 4.033 5 N -0.236 5.236 6 C -0.099 4.099 7 C -0.020 4.020 8 N -0.214 5.214 9 C -0.109 4.109 10 C 0.003 3.997 11 N -0.345 5.345 12 C 0.325 3.675 13 O -0.439 6.439 14 C -0.281 4.281 15 S 0.081 5.919 16 C -0.696 4.696 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.130 4.130 25 N -0.107 5.107 26 O 0.013 5.987 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.171 26.193 13.799 31.304 hybrid contribution 0.223 -0.980 1.244 1.599 sum -9.948 25.213 15.043 31.000 Atomic orbital electron populations 1.21727 0.92855 1.02651 1.03266 1.21510 0.97975 0.94100 1.02369 1.20604 0.77348 1.00245 1.08003 1.29616 0.99845 0.93866 0.79937 1.71896 1.00579 1.21275 1.29855 1.25964 0.95670 0.99984 0.88276 1.21015 0.89613 0.92672 0.98675 1.68520 1.05274 1.17616 1.29969 1.24409 0.92032 0.98593 0.95894 1.22368 0.96267 0.81480 0.99563 1.45387 1.74013 1.04527 1.10579 1.20039 0.74922 0.86523 0.86039 1.90685 1.49866 1.85666 1.17704 1.23365 1.06583 0.94503 1.03679 1.85521 1.95940 0.99665 1.10819 1.23169 1.58153 0.92430 0.95857 0.90042 1.26127 0.93841 1.03275 0.95884 1.70170 1.47686 1.28938 1.07885 0.85010 0.79444 0.75742 0.77839 1.18757 1.20274 1.18645 1.24540 0.97648 0.99855 0.90932 1.74610 0.98043 1.21679 1.16361 1.85263 1.11369 1.65827 1.36269 0.90744 0.91635 0.92455 0.92925 0.91609 0.85089 0.85914 0.86500 0.88822 0.87178 0.86505 0.88389 0.74706 0.87131 0.87680 0.91944 0.88357 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 71.98 0.71 -0.23 16 2 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 3 C -0.02 -0.18 5.84 29.85 0.17 -0.01 16 4 C 0.19 3.16 7.77 88.38 0.69 3.84 16 5 N -0.50 -10.68 11.55 -303.19 -3.50 -14.18 16 6 C 0.17 3.77 7.78 138.47 1.08 4.85 16 7 C 0.11 1.76 5.42 85.56 0.46 2.22 16 8 N -0.49 -8.91 6.14 -912.12 -5.60 -14.51 16 9 C 0.02 0.26 7.69 86.41 0.66 0.93 16 10 C 0.11 2.38 4.39 46.55 0.20 2.59 16 11 N -0.69 -18.16 5.37 -446.11 -2.40 -20.55 16 12 C 0.54 20.06 7.85 87.66 0.69 20.74 16 13 O -0.56 -25.82 15.48 -3.01 -0.05 -25.87 16 14 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 15 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 16 C -0.55 -31.64 9.50 67.95 0.65 -30.99 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.78 5.49 84.86 0.47 1.25 16 19 N -0.91 -56.22 13.22 21.65 0.29 -55.94 16 20 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 C 0.00 0.00 7.77 86.36 0.67 0.68 16 25 N -0.40 -9.33 12.16 -60.32 -0.73 -10.06 16 26 O 0.07 1.42 11.31 74.78 0.85 2.27 16 27 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.12 1.47 8.08 -2.39 -0.02 1.46 16 35 H 0.09 1.21 7.39 -2.39 -0.02 1.20 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 0.96 7.92 -2.39 -0.02 0.95 16 38 H 0.10 2.40 7.51 -2.39 -0.02 2.38 16 39 H 0.42 8.97 8.74 -92.71 -0.81 8.16 16 40 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 41 H 0.10 3.92 8.14 -2.40 -0.02 3.91 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.80 16 43 H 0.10 1.74 7.49 -2.39 -0.02 1.73 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -81.54 390.98 -3.00 -84.54 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.21 Total: 17.69 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 7.08 Total: 0.04 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -11.95 Total: -115.25 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.80 Total: -23.60 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -81.54 -3.00 -84.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567783360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.421 kcal (2) G-P(sol) polarization free energy of solvation -81.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds