Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31135 * 126.54884 * 2 1 4 4 C 1.34495 * 105.61140 * 180.12607 * 3 2 1 5 5 C 1.50699 * 126.28431 * 179.90455 * 4 3 2 6 6 H 1.09005 * 109.47575 * 14.70567 * 5 4 3 7 7 C 1.52995 * 109.47220 * 254.70757 * 5 4 3 8 8 N 1.46902 * 109.47429 * 134.70941 * 5 4 3 9 9 C 1.48555 * 110.99830 * 69.86818 * 8 5 4 10 10 C 1.54383 * 104.59464 * 200.96198 * 9 8 5 11 11 C 1.54253 * 105.05782 * 23.85675 * 10 9 8 12 12 H 1.09004 * 110.32352 * 118.99809 * 11 10 9 13 13 N 1.46500 * 110.32272 * 241.10133 * 11 10 9 14 14 C 1.34779 * 120.00169 * 273.54584 * 13 11 10 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99618 * 22 20 18 24 24 H 1.48498 * 109.47311 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46831 * 299.99623 * 22 20 18 26 26 C 1.48561 * 110.99675 * 314.45488 * 8 5 4 27 27 N 1.29945 * 107.42453 * 359.63485 * 4 3 2 28 28 O 1.21292 * 110.25287 * 0.23390 * 27 4 3 29 29 H 1.08999 * 109.46880 * 180.25695 * 1 2 3 30 30 H 1.09007 * 109.47214 * 300.25310 * 1 2 3 31 31 H 1.08997 * 109.47371 * 60.25620 * 1 2 3 32 32 H 1.09007 * 109.47083 * 60.00030 * 7 5 4 33 33 H 1.08993 * 109.47713 * 180.02562 * 7 5 4 34 34 H 1.09005 * 109.47433 * 300.00395 * 7 5 4 35 35 H 1.09004 * 110.41343 * 82.18740 * 9 8 5 36 36 H 1.09001 * 110.51702 * 319.79075 * 9 8 5 37 37 H 1.08994 * 110.32310 * 264.96041 * 10 9 8 38 38 H 1.09003 * 110.32195 * 142.75029 * 10 9 8 39 39 H 0.96996 * 119.99986 * 93.55181 * 13 11 10 40 40 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 41 41 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 42 42 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.41512 * 40.26056 * 26 8 5 44 44 H 1.09003 * 110.41316 * 277.81759 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0029 5 6 4.8111 1.3887 -0.0060 6 1 4.5791 2.4213 0.2551 7 6 5.4426 1.3446 -1.3989 8 7 5.7527 0.8349 0.9762 9 6 6.2752 -0.4818 0.5289 10 6 6.7773 -1.1605 1.8215 11 6 5.9834 -0.4891 2.9610 12 1 5.3861 -1.2293 3.4934 13 7 6.8954 0.1883 3.8860 14 6 7.4541 -0.4962 4.9038 15 8 7.2022 -1.6731 5.0536 16 6 8.3917 0.2007 5.8557 17 16 8.9715 -0.9769 7.1019 18 6 10.0176 0.0746 8.0532 19 1 10.1321 1.1130 7.7796 20 6 10.6951 -0.4321 9.1536 21 7 10.5558 -1.6978 9.4868 22 14 11.8035 0.6828 10.1625 23 1 11.0041 1.8041 10.7184 24 1 12.4073 -0.0943 11.2745 25 1 12.8809 1.2250 9.2961 26 6 5.0685 0.5387 2.2612 27 7 3.4645 -0.7241 0.0035 28 8 2.3029 -1.0735 0.0052 29 1 -0.3633 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8878 31 1 -0.3634 0.5098 -0.8922 32 1 4.7439 1.7556 -2.1278 33 1 6.3592 1.9343 -1.4012 34 1 5.6746 0.3121 -1.6602 35 1 7.0979 -0.3458 -0.1732 36 1 5.4812 -1.0731 0.0729 37 1 7.8455 -0.9860 1.9504 38 1 6.5682 -2.2299 1.7934 39 1 7.0970 1.1294 3.7661 40 1 7.8678 1.0210 6.3464 41 1 9.2450 0.5935 5.3028 42 1 11.0290 -2.0518 10.2559 43 1 4.0841 0.1082 2.0774 44 1 4.9825 1.4431 2.8634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567886114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = 49.143940 kcal Electronic energy + Delta-G solvation = -26967.106472 eV Core-core repulsion = 23049.654688 eV Total energy + Delta-G solvation = -3917.451784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.03406 -40.21208 -38.68995 -36.38989 -35.04798 -33.47535 -32.40701 -32.22466 -29.71756 -29.51934 -29.31902 -27.28912 -25.44089 -25.27592 -23.91543 -22.36972 -21.17921 -20.33619 -20.15516 -18.61397 -17.92918 -17.81438 -16.71704 -16.48539 -16.01256 -15.45646 -15.06608 -14.92547 -14.81404 -14.78134 -14.13449 -14.01625 -13.84510 -13.62527 -13.37022 -13.18586 -13.00241 -12.67336 -12.53381 -12.41543 -12.16378 -12.04759 -11.81298 -11.68348 -11.54412 -11.47853 -11.21957 -11.02127 -11.01887 -10.93875 -10.74178 -10.25042 -9.79757 -9.34595 -9.12931 -9.03668 -8.79707 -8.20979 -6.47158 -6.19086 -3.89485 0.72724 1.77525 2.39647 3.06709 3.12474 3.13191 3.25382 3.29304 3.33556 3.35251 3.75660 3.80700 4.22660 4.23730 4.39735 4.42744 4.68010 4.72676 4.77048 4.87571 4.97983 5.02523 5.14594 5.15845 5.16720 5.18549 5.23838 5.32631 5.41515 5.47590 5.53462 5.58295 5.68021 5.71851 5.75374 5.91757 5.94025 6.08129 6.18527 6.37686 6.49098 6.74419 7.61776 7.76185 7.79148 8.37601 8.66895 9.26011 10.88280 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.002005 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.963106 B =13964.928668 C =14291.212556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.177 3.823 3 N -0.481 5.481 4 C 0.148 3.852 5 C 0.160 3.840 6 H 0.116 0.884 7 C -0.145 4.145 8 N -0.488 5.488 9 C 0.019 3.981 10 C -0.133 4.133 11 C 0.150 3.850 12 H 0.093 0.907 13 N -0.727 5.727 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.152 4.152 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.025 3.975 27 N -0.375 5.375 28 O 0.075 5.925 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.401 0.599 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.052 0.948 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.487 6.964 -24.566 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 N -0.215 5.215 4 C -0.127 4.127 5 C 0.048 3.952 6 H 0.134 0.866 7 C -0.203 4.203 8 N -0.211 5.211 9 C -0.109 4.109 10 C -0.172 4.172 11 C 0.044 3.956 12 H 0.111 0.889 13 N -0.382 5.382 14 C 0.319 3.681 15 O -0.393 6.393 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.104 4.104 27 N -0.084 5.084 28 O 0.017 5.983 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.637 5.152 -24.113 30.908 hybrid contribution 0.194 1.928 0.296 1.960 sum -18.443 7.080 -23.816 30.943 Atomic orbital electron populations 1.20408 0.80174 1.05736 1.05721 1.28881 0.98985 0.80805 0.95625 1.71913 1.00146 1.28969 1.20509 1.26997 0.96315 0.88914 1.00465 1.20615 0.82098 0.97550 0.94915 0.86568 1.21921 1.01715 1.03361 0.93332 1.65815 1.28459 1.24653 1.02162 1.23451 1.00325 0.89043 0.98039 1.22765 1.01377 0.99993 0.93049 1.21468 0.90461 0.93782 0.89935 0.88899 1.46068 1.48475 1.14021 1.29628 1.20331 0.80264 0.87186 0.80365 1.90696 1.60392 1.15710 1.72495 1.23526 1.00570 1.04923 1.01297 1.85383 1.57855 1.12692 1.27475 1.22833 1.31804 0.98121 1.15596 0.90979 1.24992 0.96527 0.95503 0.96595 1.70007 1.40982 1.12814 1.26529 0.86225 0.80122 0.79951 0.79190 1.19946 1.20836 1.19941 1.23479 0.95965 0.99619 0.91313 1.74666 0.97226 1.15513 1.21012 1.85328 1.11604 1.35934 1.65410 0.88418 0.87744 0.87836 0.91634 0.89904 0.91782 0.89754 0.91064 0.90089 0.90492 0.76471 0.89270 0.89199 0.92158 0.93004 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.14 10.51 36.01 0.38 0.24 16 2 C 0.18 1.30 8.51 -13.06 -0.11 1.19 16 3 N -0.48 -4.58 11.55 -9.87 -0.11 -4.70 16 4 C 0.15 1.47 5.00 -156.37 -0.78 0.69 16 5 C 0.16 1.40 3.24 -68.87 -0.22 1.18 16 6 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.15 -1.04 8.76 37.16 0.33 -0.71 16 8 N -0.49 -4.83 5.51 -223.40 -1.23 -6.06 16 9 C 0.02 0.20 4.78 -2.18 -0.01 0.19 16 10 C -0.13 -1.65 6.78 -25.35 -0.17 -1.82 16 11 C 0.15 1.97 3.36 -66.55 -0.22 1.74 16 12 H 0.09 1.40 7.64 -51.93 -0.40 1.01 16 13 N -0.73 -10.36 5.00 -52.47 -0.26 -10.63 16 14 C 0.53 10.21 7.84 -10.99 -0.09 10.12 16 15 O -0.52 -12.01 15.56 5.56 0.09 -11.92 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.45 9.50 30.94 0.29 -15.15 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 22 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 26 C 0.02 0.27 5.81 -2.18 -0.01 0.25 16 27 N -0.38 -4.01 8.76 30.89 0.27 -3.74 16 28 O 0.07 0.69 11.31 18.11 0.20 0.90 16 29 H 0.10 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 0.16 8.14 -51.92 -0.42 -0.27 16 31 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.50 6.70 -51.93 -0.35 0.15 16 35 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 36 H 0.07 0.78 5.22 -51.93 -0.27 0.51 16 37 H 0.08 1.09 7.95 -51.93 -0.41 0.68 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 4.73 8.56 -40.82 -0.35 4.38 16 40 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 41 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.05 0.61 5.59 -51.93 -0.29 0.32 16 44 H 0.09 0.94 7.99 -51.93 -0.41 0.53 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -36.15 374.82 -8.63 -44.78 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.23 Total: 1.70 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.50 Total: -2.99 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.60 Total: -50.84 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.29 Total: -11.02 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.15 -8.63 -44.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.924 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds