Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31135 * 126.54884 * 2 1 4 4 C 1.34495 * 105.61140 * 180.12607 * 3 2 1 5 5 C 1.50699 * 126.28431 * 179.90455 * 4 3 2 6 6 H 1.09005 * 109.47575 * 14.70567 * 5 4 3 7 7 C 1.52995 * 109.47220 * 254.70757 * 5 4 3 8 8 N 1.46902 * 109.47429 * 134.70941 * 5 4 3 9 9 C 1.48555 * 110.99830 * 69.86818 * 8 5 4 10 10 C 1.54383 * 104.59464 * 200.96198 * 9 8 5 11 11 C 1.54253 * 105.05782 * 23.85675 * 10 9 8 12 12 H 1.09004 * 110.32352 * 118.99809 * 11 10 9 13 13 N 1.46500 * 110.32272 * 241.10133 * 11 10 9 14 14 C 1.34779 * 120.00169 * 273.54584 * 13 11 10 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 11 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 11 17 17 S 1.81000 * 109.46881 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99929 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99720 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99778 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47367 * 59.99618 * 22 20 18 24 24 H 1.48498 * 109.47311 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46831 * 299.99623 * 22 20 18 26 26 C 1.48561 * 110.99675 * 314.45488 * 8 5 4 27 27 N 1.29945 * 107.42453 * 359.63485 * 4 3 2 28 28 O 1.21292 * 110.25287 * 0.23390 * 27 4 3 29 29 H 1.08999 * 109.46880 * 180.25695 * 1 2 3 30 30 H 1.09007 * 109.47214 * 300.25310 * 1 2 3 31 31 H 1.08997 * 109.47371 * 60.25620 * 1 2 3 32 32 H 1.09007 * 109.47083 * 60.00030 * 7 5 4 33 33 H 1.08993 * 109.47713 * 180.02562 * 7 5 4 34 34 H 1.09005 * 109.47433 * 300.00395 * 7 5 4 35 35 H 1.09004 * 110.41343 * 82.18740 * 9 8 5 36 36 H 1.09001 * 110.51702 * 319.79075 * 9 8 5 37 37 H 1.08994 * 110.32310 * 264.96041 * 10 9 8 38 38 H 1.09003 * 110.32195 * 142.75029 * 10 9 8 39 39 H 0.96996 * 119.99986 * 93.55181 * 13 11 10 40 40 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 41 41 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 42 42 H 0.96996 * 120.00393 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.41512 * 40.26056 * 26 8 5 44 44 H 1.09003 * 110.41316 * 277.81759 * 26 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0029 5 6 4.8111 1.3887 -0.0060 6 1 4.5791 2.4213 0.2551 7 6 5.4426 1.3446 -1.3989 8 7 5.7527 0.8349 0.9762 9 6 6.2752 -0.4818 0.5289 10 6 6.7773 -1.1605 1.8215 11 6 5.9834 -0.4891 2.9610 12 1 5.3861 -1.2293 3.4934 13 7 6.8954 0.1883 3.8860 14 6 7.4541 -0.4962 4.9038 15 8 7.2022 -1.6731 5.0536 16 6 8.3917 0.2007 5.8557 17 16 8.9715 -0.9769 7.1019 18 6 10.0176 0.0746 8.0532 19 1 10.1321 1.1130 7.7796 20 6 10.6951 -0.4321 9.1536 21 7 10.5558 -1.6978 9.4868 22 14 11.8035 0.6828 10.1625 23 1 11.0041 1.8041 10.7184 24 1 12.4073 -0.0943 11.2745 25 1 12.8809 1.2250 9.2961 26 6 5.0685 0.5387 2.2612 27 7 3.4645 -0.7241 0.0035 28 8 2.3029 -1.0735 0.0052 29 1 -0.3633 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8878 31 1 -0.3634 0.5098 -0.8922 32 1 4.7439 1.7556 -2.1278 33 1 6.3592 1.9343 -1.4012 34 1 5.6746 0.3121 -1.6602 35 1 7.0979 -0.3458 -0.1732 36 1 5.4812 -1.0731 0.0729 37 1 7.8455 -0.9860 1.9504 38 1 6.5682 -2.2299 1.7934 39 1 7.0970 1.1294 3.7661 40 1 7.8678 1.0210 6.3464 41 1 9.2450 0.5935 5.3028 42 1 11.0290 -2.0518 10.2559 43 1 4.0841 0.1082 2.0774 44 1 4.9825 1.4431 2.8634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567886114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = 19.817611 kcal Electronic energy + Delta-G solvation = -26968.378157 eV Core-core repulsion = 23049.654688 eV Total energy + Delta-G solvation = -3918.723469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.69949 -41.29694 -39.97705 -37.19583 -35.96935 -34.58810 -34.31858 -33.16202 -30.96477 -30.56319 -29.73810 -28.44097 -27.60963 -25.96165 -24.59095 -23.15528 -22.42076 -21.47300 -21.02052 -19.86485 -19.28038 -18.62020 -18.01148 -17.60418 -17.18844 -16.87749 -16.41770 -16.30552 -15.92245 -15.69050 -15.54390 -14.86617 -14.66697 -14.51064 -14.36858 -14.20144 -14.00575 -13.84942 -13.64453 -13.17252 -13.11803 -13.01700 -12.89951 -12.85420 -12.76932 -12.64791 -12.49861 -12.38879 -12.21205 -12.05899 -11.86788 -11.74128 -11.12929 -10.99297 -10.85983 -10.28532 -10.23453 -9.85214 -8.67127 -8.34450 -6.12846 0.11941 1.11645 1.26022 1.44099 1.46185 1.56204 1.58334 1.89868 2.22555 2.28237 2.50073 2.64564 2.99424 3.13059 3.29489 3.34723 3.55981 3.79119 3.92364 4.00312 4.04106 4.15229 4.23546 4.25508 4.29889 4.49249 4.50385 4.51808 4.60234 4.61083 4.61698 4.68322 4.79160 4.82970 4.91124 5.00520 5.06255 5.09974 5.12736 5.39205 5.41658 5.58686 5.69587 6.19719 6.48753 7.06502 7.12196 7.22077 8.74517 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.002005 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.963106 B =13964.928668 C =14291.212556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.187 3.813 3 N -0.505 5.505 4 C 0.143 3.857 5 C 0.158 3.842 6 H 0.125 0.875 7 C -0.139 4.139 8 N -0.483 5.483 9 C 0.029 3.971 10 C -0.131 4.131 11 C 0.148 3.852 12 H 0.070 0.930 13 N -0.701 5.701 14 C 0.536 3.464 15 O -0.565 6.565 16 C -0.128 4.128 17 S -0.151 6.151 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.037 3.963 27 N -0.399 5.399 28 O 0.062 5.938 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.417 0.583 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.271 0.729 43 H 0.045 0.955 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.009 9.654 -25.727 33.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.033 4.033 3 N -0.240 5.240 4 C -0.132 4.132 5 C 0.047 3.953 6 H 0.143 0.857 7 C -0.197 4.197 8 N -0.206 5.206 9 C -0.099 4.099 10 C -0.170 4.170 11 C 0.042 3.958 12 H 0.088 0.912 13 N -0.355 5.355 14 C 0.322 3.678 15 O -0.443 6.443 16 C -0.279 4.279 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.092 4.092 27 N -0.111 5.111 28 O 0.007 5.993 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.255 0.745 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.197 7.887 -25.322 32.741 hybrid contribution 0.201 1.105 0.535 1.244 sum -18.997 8.992 -24.787 32.498 Atomic orbital electron populations 1.20751 0.76743 1.07516 1.06980 1.29849 1.00479 0.79781 0.93170 1.71924 1.00251 1.29832 1.22022 1.27186 0.96925 0.88890 1.00157 1.20747 0.81633 0.97547 0.95374 0.85716 1.21889 1.02241 1.03180 0.92403 1.65843 1.28696 1.24052 1.02039 1.23364 1.00562 0.89047 0.96896 1.22700 1.00654 0.99708 0.93962 1.21520 0.90439 0.94177 0.89663 0.91195 1.45790 1.47152 1.14530 1.28031 1.20097 0.80154 0.86553 0.81008 1.90689 1.62105 1.17667 1.73836 1.23357 1.01661 1.03213 0.99671 1.85574 1.58883 1.17137 1.30793 1.23174 1.31872 0.98467 1.15943 0.89883 1.26146 0.98100 0.97137 0.97859 1.70176 1.42259 1.15074 1.27269 0.84995 0.77921 0.77735 0.77285 1.18615 1.20391 1.18643 1.23335 0.94933 0.99131 0.91766 1.74647 0.98100 1.16024 1.22334 1.85291 1.11541 1.36612 1.65865 0.86453 0.86571 0.86061 0.90911 0.88786 0.92480 0.88365 0.91496 0.90978 0.91468 0.74519 0.87181 0.87216 0.91994 0.93650 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.14 10.51 71.24 0.75 0.61 16 2 C 0.19 2.50 8.51 88.38 0.75 3.25 16 3 N -0.51 -9.02 11.55 -303.22 -3.50 -12.52 16 4 C 0.14 2.70 5.00 138.46 0.69 3.40 16 5 C 0.16 2.50 3.24 44.17 0.14 2.65 16 6 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 7 C -0.14 -1.72 8.76 71.98 0.63 -1.09 16 8 N -0.48 -8.75 5.51 -860.71 -4.74 -13.50 16 9 C 0.03 0.57 4.78 86.45 0.41 0.98 16 10 C -0.13 -3.24 6.78 31.49 0.21 -3.03 16 11 C 0.15 3.84 3.36 45.88 0.15 4.00 16 12 H 0.07 2.18 7.64 -2.38 -0.02 2.17 16 13 N -0.70 -19.20 5.00 -438.30 -2.19 -21.39 16 14 C 0.54 20.47 7.84 87.66 0.69 21.16 16 15 O -0.56 -26.93 15.56 -3.04 -0.05 -26.98 16 16 C -0.13 -5.18 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.71 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 22 Si 1.00 43.97 29.55 68.60 2.03 46.00 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 26 C 0.04 0.76 5.81 86.45 0.50 1.26 16 27 N -0.40 -8.38 8.76 -60.35 -0.53 -8.91 16 28 O 0.06 1.12 11.31 74.86 0.85 1.97 16 29 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 0.80 6.70 -2.38 -0.02 0.78 16 35 H 0.10 1.68 7.69 -2.38 -0.02 1.66 16 36 H 0.07 1.43 5.22 -2.39 -0.01 1.42 16 37 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.42 8.84 8.56 -92.71 -0.79 8.04 16 40 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 41 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.05 1.03 5.59 -2.38 -0.01 1.02 16 44 H 0.10 1.91 7.99 -2.39 -0.02 1.89 16 Total: -1.00 -80.86 374.82 -2.28 -83.14 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.24 Total: 19.49 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 6.49 Total: -1.33 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -10.68 Total: -112.61 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.80 Total: -25.01 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -80.86 -2.28 -83.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.958 kcal (2) G-P(sol) polarization free energy of solvation -80.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds