Wall clock time and date at job start Sat Apr 11 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31137 * 126.54943 * 2 1 4 4 C 1.34493 * 105.61305 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.28596 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47020 * 344.97522 * 5 4 3 7 7 C 1.52997 * 109.47237 * 104.97468 * 5 4 3 8 8 N 1.46897 * 109.46989 * 224.97336 * 5 4 3 9 9 C 1.47487 * 110.99830 * 164.51032 * 8 5 4 10 10 C 1.53514 * 87.93195 * 221.29850 * 9 8 5 11 11 N 1.46501 * 114.16750 * 272.37710 * 10 9 8 12 12 C 1.46497 * 120.00289 * 33.84230 * 11 10 9 13 13 C 1.34779 * 119.99551 * 213.83796 * 11 10 9 14 14 O 1.21280 * 120.00212 * 0.02562 * 13 11 10 15 15 C 1.50699 * 119.99650 * 179.97438 * 13 11 10 16 16 S 1.81000 * 109.47043 * 180.02562 * 15 13 11 17 17 C 1.76202 * 99.99890 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00371 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00072 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00334 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47213 * 90.00101 * 21 19 17 23 23 H 1.48499 * 109.47011 * 210.00440 * 21 19 17 24 24 H 1.48500 * 109.47282 * 330.00482 * 21 19 17 25 25 C 1.47478 * 110.99812 * 68.54396 * 8 5 4 26 26 N 1.29943 * 107.42752 * 0.02562 * 4 3 2 27 27 O 1.21309 * 110.25077 * 359.97438 * 26 4 3 28 28 H 1.09007 * 109.47260 * 89.99835 * 1 2 3 29 29 H 1.09005 * 109.46835 * 209.99405 * 1 2 3 30 30 H 1.08993 * 109.47321 * 329.99401 * 1 2 3 31 31 H 1.09003 * 109.47184 * 295.60513 * 7 5 4 32 32 H 1.09000 * 109.47545 * 55.60313 * 7 5 4 33 33 H 1.08998 * 109.47393 * 175.60599 * 7 5 4 34 34 H 1.09003 * 113.47693 * 336.06170 * 9 8 5 35 35 H 1.08992 * 113.47750 * 106.53014 * 9 8 5 36 36 H 1.09000 * 114.17304 * 139.67032 * 10 9 8 37 37 H 1.09005 * 109.47016 * 89.99562 * 12 11 10 38 38 H 1.09000 * 109.47021 * 209.99827 * 12 11 10 39 39 H 1.08999 * 109.47108 * 330.00285 * 12 11 10 40 40 H 1.09002 * 109.47394 * 300.00284 * 15 13 11 41 41 H 1.09007 * 109.47140 * 60.00767 * 15 13 11 42 42 H 0.96998 * 119.99928 * 179.97438 * 20 19 17 43 43 H 1.09007 * 113.47643 * 253.46491 * 25 8 5 44 44 H 1.08998 * 113.48185 * 23.86936 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 0.0006 5 6 4.8111 1.3888 0.0014 6 1 4.5793 2.4201 -0.2650 7 6 5.4410 1.3513 1.3952 8 7 5.7537 0.8302 -0.9771 9 6 6.8345 1.7881 -1.2761 10 6 6.7091 1.3837 -2.7517 11 7 7.5253 0.2267 -3.1280 12 6 7.7557 -0.8519 -2.1638 13 6 8.0641 0.1547 -4.3613 14 8 7.8737 1.0478 -5.1594 15 6 8.9041 -1.0352 -4.7481 16 16 9.4796 -0.8387 -6.4529 17 6 10.4071 -2.3256 -6.6360 18 1 10.4766 -3.0234 -5.8146 19 6 11.0494 -2.5997 -7.8356 20 7 11.7419 -3.7107 -7.9726 21 14 10.9299 -1.3925 -9.2561 22 1 12.0439 -0.4143 -9.1695 23 1 11.0180 -2.1306 -10.5416 24 1 9.6328 -0.6728 -9.1863 25 6 5.2681 1.0340 -2.3546 26 7 3.4645 -0.7241 0.0003 27 8 2.3028 -1.0735 0.0002 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 4.7743 1.8362 2.1083 32 1 5.6010 0.3153 1.6939 33 1 6.3963 1.8757 1.3764 34 1 6.5603 2.8257 -1.0855 35 1 7.7915 1.5158 -0.8311 36 1 6.7899 2.2159 -3.4510 37 1 6.9715 -1.6024 -2.2640 38 1 8.7251 -1.3111 -2.3572 39 1 7.7417 -0.4447 -1.1528 40 1 9.7631 -1.1059 -4.0809 41 1 8.3064 -1.9433 -4.6685 42 1 12.1904 -3.9024 -8.8110 43 1 4.8975 0.1225 -2.8238 44 1 4.5749 1.8696 -2.4517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569483183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:25 Heat of formation + Delta-G solvation = 87.511507 kcal Electronic energy + Delta-G solvation = -27002.896625 eV Core-core repulsion = 23087.108583 eV Total energy + Delta-G solvation = -3915.788042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.92544 -41.17395 -38.87473 -36.53402 -35.12976 -34.02809 -32.42178 -32.28658 -29.49012 -29.24286 -27.49694 -26.92832 -25.76854 -25.55611 -24.76252 -23.51661 -21.25594 -20.68156 -18.69268 -18.48447 -17.94613 -17.65992 -17.00310 -16.62044 -15.84240 -15.69058 -15.40980 -15.00449 -14.97435 -14.73327 -14.06447 -13.93465 -13.70046 -13.52376 -13.48623 -13.02315 -12.89932 -12.78933 -12.62249 -12.52293 -12.41130 -12.08033 -12.06249 -11.97543 -11.74796 -11.40848 -11.28106 -11.22703 -11.09560 -10.99257 -10.57220 -10.18652 -9.84439 -9.55805 -9.28673 -8.98724 -8.57003 -8.47231 -6.90236 -6.27105 -3.98740 0.82724 1.84134 2.47639 2.68190 2.88806 3.03440 3.17454 3.34288 3.49055 3.51854 3.61033 3.79356 4.20409 4.34408 4.36517 4.44110 4.54382 4.67741 4.68836 4.75247 4.85924 4.92404 4.99814 5.07739 5.10191 5.11964 5.21830 5.26919 5.34094 5.36882 5.40903 5.47973 5.57959 5.62382 5.65379 5.73694 5.83206 5.85371 5.94896 6.06162 6.49249 6.60729 7.47816 7.86773 7.95996 8.42774 8.43948 9.19035 10.82101 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002194 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.807176 B =12756.217392 C =13149.964655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.173 3.827 3 N -0.484 5.484 4 C 0.175 3.825 5 C 0.138 3.862 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.456 5.456 9 C -0.010 4.010 10 C 0.127 3.873 11 N -0.597 5.597 12 C 0.084 3.916 13 C 0.535 3.465 14 O -0.520 6.520 15 C -0.119 4.119 16 S -0.144 6.144 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.016 4.016 26 N -0.353 5.353 27 O 0.078 5.922 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.270 0.730 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.308 10.436 21.971 32.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 N -0.219 5.219 4 C -0.099 4.099 5 C 0.028 3.972 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.179 5.179 9 C -0.140 4.140 10 C 0.021 3.979 11 N -0.332 5.332 12 C -0.059 4.059 13 C 0.323 3.677 14 O -0.394 6.394 15 C -0.269 4.269 16 S 0.082 5.918 17 C -0.667 4.667 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.146 4.146 26 N -0.058 5.058 27 O 0.017 5.983 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.526 10.854 20.959 31.279 hybrid contribution -0.202 -0.109 0.154 0.277 sum -20.728 10.745 21.113 31.478 Atomic orbital electron populations 1.20393 0.80253 1.05835 1.05518 1.28820 0.98949 0.80852 0.96117 1.71863 1.00203 1.29117 1.20735 1.25464 0.94439 0.88408 1.01586 1.20494 0.85623 0.94587 0.96490 0.90218 1.21760 1.00973 1.03621 0.93282 1.69196 1.06504 1.39500 1.02734 1.24320 0.97580 0.96144 0.95908 1.21846 0.89989 0.90290 0.95770 1.47409 1.51156 1.20962 1.13648 1.21805 1.01273 0.89549 0.93233 1.20355 0.79040 0.87742 0.80580 1.90682 1.59539 1.39648 1.49544 1.23301 1.01573 0.98563 1.03475 1.84763 1.66085 1.31827 1.09119 1.22309 1.35474 1.05040 1.03916 0.89369 1.24717 0.93526 0.95109 0.98000 1.69938 1.31398 1.23769 1.26586 0.86731 0.81472 0.81733 0.81886 1.19219 1.19971 1.15935 1.24355 0.97964 1.02381 0.89936 1.74720 0.96504 1.15493 1.19111 1.85360 1.11685 1.35821 1.65399 0.87999 0.88374 0.87791 0.91781 0.91203 0.90852 0.89739 0.88394 0.86452 0.92667 0.91142 0.89992 0.88412 0.88436 0.91962 0.89372 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.16 10.51 36.00 0.38 0.22 16 2 C 0.17 1.35 8.51 -13.05 -0.11 1.24 16 3 N -0.48 -4.86 11.55 -9.87 -0.11 -4.97 16 4 C 0.17 1.87 6.43 -156.38 -1.01 0.87 16 5 C 0.14 1.24 2.21 -68.87 -0.15 1.09 16 6 H 0.08 0.65 7.56 -51.93 -0.39 0.26 16 7 C -0.14 -1.03 9.34 37.16 0.35 -0.68 16 8 N -0.46 -4.44 4.69 -238.00 -1.12 -5.56 16 9 C -0.01 -0.09 6.03 -7.54 -0.05 -0.13 16 10 C 0.13 1.50 4.66 -67.71 -0.32 1.18 16 11 N -0.60 -8.43 3.11 -173.62 -0.54 -8.97 16 12 C 0.08 1.00 9.33 59.85 0.56 1.56 16 13 C 0.53 9.89 7.69 -10.98 -0.08 9.80 16 14 O -0.52 -11.31 15.38 5.56 0.09 -11.23 16 15 C -0.12 -2.38 4.71 36.01 0.17 -2.21 16 16 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 17 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 18 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.77 13.97 55.49 0.78 -25.99 16 21 Si 0.86 21.99 27.74 -169.99 -4.71 17.27 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 25 C -0.02 -0.18 6.77 -7.55 -0.05 -0.23 16 26 N -0.35 -4.19 12.15 30.90 0.38 -3.81 16 27 O 0.08 0.78 11.31 18.11 0.20 0.98 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.45 7.62 -51.93 -0.40 0.05 16 34 H 0.08 0.56 7.68 -51.93 -0.40 0.16 16 35 H 0.10 0.82 7.25 -51.93 -0.38 0.44 16 36 H 0.12 1.50 7.29 -51.93 -0.38 1.12 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 39 H 0.08 0.85 5.68 -51.93 -0.29 0.56 16 40 H 0.10 1.82 7.40 -51.91 -0.38 1.44 16 41 H 0.10 1.87 8.11 -51.91 -0.42 1.44 16 42 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 44 H 0.08 0.77 7.79 -51.93 -0.40 0.36 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -36.18 377.31 -7.77 -43.95 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -6.32 Total: -2.24 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.10 Total: 0.59 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.62 Total: -49.31 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.29 Total: -10.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.18 -7.77 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.460 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds