Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31137 * 126.54943 * 2 1 4 4 C 1.34493 * 105.61305 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.28596 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47020 * 344.97522 * 5 4 3 7 7 C 1.52997 * 109.47237 * 104.97468 * 5 4 3 8 8 N 1.46897 * 109.46989 * 224.97336 * 5 4 3 9 9 C 1.47487 * 110.99830 * 164.51032 * 8 5 4 10 10 C 1.53514 * 87.93195 * 221.29850 * 9 8 5 11 11 N 1.46501 * 114.16750 * 272.37710 * 10 9 8 12 12 C 1.46497 * 120.00289 * 33.84230 * 11 10 9 13 13 C 1.34779 * 119.99551 * 213.83796 * 11 10 9 14 14 O 1.21280 * 120.00212 * 0.02562 * 13 11 10 15 15 C 1.50699 * 119.99650 * 179.97438 * 13 11 10 16 16 S 1.81000 * 109.47043 * 180.02562 * 15 13 11 17 17 C 1.76202 * 99.99890 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00371 * 359.97438 * 17 16 15 19 19 C 1.38803 * 120.00072 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00334 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99790 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47213 * 90.00101 * 21 19 17 23 23 H 1.48499 * 109.47011 * 210.00440 * 21 19 17 24 24 H 1.48500 * 109.47282 * 330.00482 * 21 19 17 25 25 C 1.47478 * 110.99812 * 68.54396 * 8 5 4 26 26 N 1.29943 * 107.42752 * 0.02562 * 4 3 2 27 27 O 1.21309 * 110.25077 * 359.97438 * 26 4 3 28 28 H 1.09007 * 109.47260 * 89.99835 * 1 2 3 29 29 H 1.09005 * 109.46835 * 209.99405 * 1 2 3 30 30 H 1.08993 * 109.47321 * 329.99401 * 1 2 3 31 31 H 1.09003 * 109.47184 * 295.60513 * 7 5 4 32 32 H 1.09000 * 109.47545 * 55.60313 * 7 5 4 33 33 H 1.08998 * 109.47393 * 175.60599 * 7 5 4 34 34 H 1.09003 * 113.47693 * 336.06170 * 9 8 5 35 35 H 1.08992 * 113.47750 * 106.53014 * 9 8 5 36 36 H 1.09000 * 114.17304 * 139.67032 * 10 9 8 37 37 H 1.09005 * 109.47016 * 89.99562 * 12 11 10 38 38 H 1.09000 * 109.47021 * 209.99827 * 12 11 10 39 39 H 1.08999 * 109.47108 * 330.00285 * 12 11 10 40 40 H 1.09002 * 109.47394 * 300.00284 * 15 13 11 41 41 H 1.09007 * 109.47140 * 60.00767 * 15 13 11 42 42 H 0.96998 * 119.99928 * 179.97438 * 20 19 17 43 43 H 1.09007 * 113.47643 * 253.46491 * 25 8 5 44 44 H 1.08998 * 113.48185 * 23.86936 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 0.0006 5 6 4.8111 1.3888 0.0014 6 1 4.5793 2.4201 -0.2650 7 6 5.4410 1.3513 1.3952 8 7 5.7537 0.8302 -0.9771 9 6 6.8345 1.7881 -1.2761 10 6 6.7091 1.3837 -2.7517 11 7 7.5253 0.2267 -3.1280 12 6 7.7557 -0.8519 -2.1638 13 6 8.0641 0.1547 -4.3613 14 8 7.8737 1.0478 -5.1594 15 6 8.9041 -1.0352 -4.7481 16 16 9.4796 -0.8387 -6.4529 17 6 10.4071 -2.3256 -6.6360 18 1 10.4766 -3.0234 -5.8146 19 6 11.0494 -2.5997 -7.8356 20 7 11.7419 -3.7107 -7.9726 21 14 10.9299 -1.3925 -9.2561 22 1 12.0439 -0.4143 -9.1695 23 1 11.0180 -2.1306 -10.5416 24 1 9.6328 -0.6728 -9.1863 25 6 5.2681 1.0340 -2.3546 26 7 3.4645 -0.7241 0.0003 27 8 2.3028 -1.0735 0.0002 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 4.7743 1.8362 2.1083 32 1 5.6010 0.3153 1.6939 33 1 6.3963 1.8757 1.3764 34 1 6.5603 2.8257 -1.0855 35 1 7.7915 1.5158 -0.8311 36 1 6.7899 2.2159 -3.4510 37 1 6.9715 -1.6024 -2.2640 38 1 8.7251 -1.3111 -2.3572 39 1 7.7417 -0.4447 -1.1528 40 1 9.7631 -1.1059 -4.0809 41 1 8.3064 -1.9433 -4.6685 42 1 12.1904 -3.9024 -8.8110 43 1 4.8975 0.1225 -2.8238 44 1 4.5749 1.8696 -2.4517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569483183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = 59.429249 kcal Electronic energy + Delta-G solvation = -27004.114363 eV Core-core repulsion = 23087.108583 eV Total energy + Delta-G solvation = -3917.005780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.63436 -42.10231 -40.18115 -37.31623 -36.12880 -34.83315 -34.67875 -33.00884 -30.92125 -29.69054 -28.48997 -27.89538 -27.72183 -26.66373 -25.51707 -24.16964 -22.32989 -21.44327 -20.06629 -19.47047 -19.21332 -18.64449 -18.27621 -17.52855 -17.12525 -16.95583 -16.82323 -16.36275 -15.96212 -15.59725 -15.42940 -14.97179 -14.72427 -14.62205 -14.18757 -14.15802 -13.91810 -13.67718 -13.54035 -13.53809 -13.35025 -13.21688 -13.02203 -12.99631 -12.97142 -12.71290 -12.62412 -12.43222 -12.13772 -12.07169 -11.91981 -11.84667 -11.17821 -11.02971 -10.86131 -10.55117 -10.07622 -9.74358 -9.01803 -8.52194 -6.23618 0.18365 0.94923 1.14258 1.30832 1.42989 1.45129 1.52375 1.94820 1.98593 2.24446 2.40892 2.66572 2.75834 2.85733 3.14691 3.35645 3.54014 3.63497 3.76716 3.87300 4.11965 4.18464 4.21139 4.24356 4.32587 4.41647 4.45845 4.52631 4.57656 4.60233 4.62631 4.72074 4.72543 4.76741 4.78797 4.91548 5.01130 5.02165 5.11718 5.20497 5.50623 5.70012 5.76089 6.10585 6.20595 6.92522 7.02035 7.18995 8.60220 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020878 B = 0.002194 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.807176 B =12756.217392 C =13149.964655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.183 3.817 3 N -0.509 5.509 4 C 0.168 3.832 5 C 0.138 3.862 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.463 5.463 9 C 0.008 3.992 10 C 0.112 3.888 11 N -0.584 5.584 12 C 0.084 3.916 13 C 0.537 3.463 14 O -0.559 6.559 15 C -0.105 4.105 16 S -0.173 6.173 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.045 3.955 20 N -0.916 5.916 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.259 1.259 24 H -0.237 1.237 25 C -0.006 4.006 26 N -0.386 5.386 27 O 0.066 5.934 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.277 0.723 43 H 0.062 0.938 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.673 12.046 23.403 34.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.037 4.037 3 N -0.244 5.244 4 C -0.105 4.105 5 C 0.027 3.973 6 H 0.109 0.891 7 C -0.189 4.189 8 N -0.187 5.187 9 C -0.121 4.121 10 C 0.006 3.994 11 N -0.316 5.316 12 C -0.058 4.058 13 C 0.324 3.676 14 O -0.437 6.437 15 C -0.256 4.256 16 S 0.054 5.946 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.161 4.161 20 N -0.554 5.554 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.183 1.183 24 H -0.161 1.161 25 C -0.137 4.137 26 N -0.095 5.095 27 O 0.007 5.993 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.926 12.449 22.445 33.756 hybrid contribution 0.073 -0.645 -0.107 0.658 sum -21.852 11.804 22.338 33.404 Atomic orbital electron populations 1.20746 0.76668 1.07568 1.06934 1.29838 1.00504 0.79804 0.93504 1.71884 1.00269 1.29973 1.22300 1.25838 0.95331 0.88380 1.00979 1.20629 0.84983 0.94703 0.96939 0.89053 1.21721 1.01861 1.02965 0.92379 1.69179 1.06977 1.40403 1.02148 1.24308 0.97681 0.97447 0.92684 1.22058 0.90399 0.89107 0.97805 1.47348 1.49948 1.22018 1.12322 1.21941 1.01284 0.88973 0.93613 1.20010 0.79185 0.86661 0.81713 1.90666 1.61282 1.40720 1.51015 1.23268 1.02616 1.00023 0.99690 1.84649 1.65818 1.29933 1.14233 1.22441 1.35954 1.05933 1.03332 0.92056 1.25583 0.93203 0.96765 1.00512 1.70016 1.32311 1.25349 1.27726 0.85851 0.81399 0.79727 0.79287 1.18521 1.18282 1.16138 1.24214 0.97295 1.01540 0.90614 1.74696 0.97582 1.16293 1.20882 1.85313 1.11552 1.36518 1.65882 0.86455 0.86130 0.86483 0.91122 0.92714 0.89096 0.86927 0.87415 0.87484 0.92967 0.90810 0.87898 0.86852 0.87592 0.91335 0.91915 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.16 10.51 71.23 0.75 0.58 16 2 C 0.18 2.62 8.51 88.38 0.75 3.38 16 3 N -0.51 -9.62 11.55 -303.19 -3.50 -13.12 16 4 C 0.17 3.44 6.43 138.46 0.89 4.33 16 5 C 0.14 2.19 2.21 44.17 0.10 2.29 16 6 H 0.09 1.24 7.56 -2.38 -0.02 1.22 16 7 C -0.13 -1.65 9.34 71.98 0.67 -0.98 16 8 N -0.46 -8.13 4.69 -906.90 -4.26 -12.38 16 9 C 0.01 0.11 6.03 83.57 0.50 0.61 16 10 C 0.11 2.46 4.66 45.45 0.21 2.67 16 11 N -0.58 -15.82 3.11 -821.58 -2.56 -18.38 16 12 C 0.08 1.86 9.33 127.77 1.19 3.05 16 13 C 0.54 19.59 7.69 87.66 0.67 20.26 16 14 O -0.56 -24.34 15.38 -3.03 -0.05 -24.38 16 15 C -0.11 -4.19 4.71 71.24 0.34 -3.85 16 16 S -0.17 -8.94 18.55 -56.49 -1.05 -9.99 16 17 C -0.53 -31.32 10.04 67.96 0.68 -30.64 16 18 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 19 C 0.04 2.66 5.50 84.86 0.47 3.13 16 20 N -0.92 -56.35 13.97 21.65 0.30 -56.04 16 21 Si 0.92 45.49 27.74 68.60 1.90 47.39 16 22 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 25 C -0.01 -0.13 6.77 83.57 0.57 0.43 16 26 N -0.39 -9.04 12.15 -60.31 -0.73 -9.77 16 27 O 0.07 1.28 11.31 74.87 0.85 2.13 16 28 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 29 H 0.12 -0.19 8.14 -2.38 -0.02 -0.21 16 30 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.81 7.62 -2.39 -0.02 0.80 16 34 H 0.11 1.04 7.68 -2.39 -0.02 1.02 16 35 H 0.11 1.40 7.25 -2.39 -0.02 1.38 16 36 H 0.11 2.64 7.29 -2.39 -0.02 2.62 16 37 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.07 1.60 6.44 -2.39 -0.02 1.59 16 39 H 0.10 1.88 5.68 -2.39 -0.01 1.87 16 40 H 0.11 4.15 7.40 -2.39 -0.02 4.13 16 41 H 0.11 4.03 8.11 -2.39 -0.02 4.01 16 42 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 Total: -1.00 -79.96 377.31 -0.32 -80.27 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.98 Total: 9.01 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 7.79 Total: 5.27 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -10.75 Total: -109.70 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.80 Total: -22.26 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Total: -79.96 -0.32 -80.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.704 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds