Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29432 * 124.80359 * 2 1 4 4 C 1.30944 * 117.36085 * 180.02562 * 3 2 1 5 5 C 1.35660 * 114.19773 * 0.02562 * 4 3 2 6 6 C 1.46681 * 126.13244 * 179.97438 * 5 4 3 7 7 O 1.21686 * 119.99893 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99577 * 179.97438 * 6 5 4 9 9 C 1.46510 * 119.99669 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.46770 * 35.00357 * 9 8 6 11 11 C 1.52996 * 109.47150 * 275.00147 * 9 8 6 12 12 C 1.52997 * 109.47089 * 154.99962 * 9 8 6 13 13 H 1.09001 * 109.46922 * 295.00229 * 12 9 8 14 14 C 1.53006 * 109.47164 * 54.99980 * 12 9 8 15 15 N 1.46898 * 109.47123 * 174.99864 * 12 9 8 16 16 C 1.46906 * 110.99961 * 155.00049 * 15 12 9 17 17 C 1.50699 * 109.46941 * 180.02562 * 16 15 12 18 18 O 1.21290 * 120.00122 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99486 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99314 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00247 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99599 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00095 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47066 * 59.99933 * 24 22 20 26 26 H 1.48499 * 109.46785 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47156 * 299.99610 * 24 22 20 28 28 S 1.70955 * 124.80608 * 180.35161 * 2 1 3 29 29 H 1.09003 * 109.47056 * 89.97641 * 1 2 3 30 30 H 1.09003 * 109.47097 * 209.97122 * 1 2 3 31 31 H 1.09001 * 109.47134 * 329.97738 * 1 2 3 32 32 H 1.08006 * 122.89943 * 179.97438 * 4 3 2 33 33 H 0.96996 * 120.00559 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.47375 * 180.02562 * 11 9 8 35 35 H 1.09000 * 109.46912 * 300.00325 * 11 9 8 36 36 H 1.09004 * 109.47120 * 60.00008 * 11 9 8 37 37 H 1.09001 * 109.47002 * 59.99738 * 14 12 9 38 38 H 1.08993 * 109.46955 * 180.02562 * 14 12 9 39 39 H 1.09000 * 109.47050 * 300.00004 * 14 12 9 40 40 H 1.00895 * 110.99835 * 31.05048 * 15 12 9 41 41 H 1.08996 * 109.46904 * 300.00505 * 16 15 12 42 42 H 1.08996 * 109.46971 * 60.00210 * 16 15 12 43 43 H 0.96999 * 120.00031 * 359.97438 * 19 17 16 44 44 H 0.96997 * 119.99888 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9352 -0.4058 -0.0015 6 6 5.3189 -0.8925 -0.0028 7 8 6.2425 -0.1002 -0.0035 8 7 5.5673 -2.2172 -0.0033 9 6 6.9494 -2.7033 -0.0051 10 1 7.5721 -2.0298 0.5836 11 6 7.4703 -2.7538 -1.4428 12 6 6.9975 -4.1058 0.6043 13 1 6.7109 -4.0555 1.6548 14 6 6.0277 -5.0214 -0.1456 15 7 8.3609 -4.6412 0.4938 16 6 8.6148 -5.6527 1.5285 17 6 10.0201 -6.1773 1.3840 18 8 10.7393 -5.7509 0.5053 19 7 10.4774 -7.1210 2.2306 20 6 11.7562 -7.5979 2.0995 21 1 12.3968 -7.2176 1.3176 22 6 12.2275 -8.5712 2.9720 23 7 11.4478 -9.0343 3.9231 24 14 13.9695 -9.2215 2.7930 25 1 14.9338 -8.1029 2.9485 26 1 14.2258 -10.2444 3.8385 27 1 14.1338 -9.8336 1.4501 28 16 2.4828 -1.4037 -0.0086 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 4.2433 1.7164 -0.0010 33 1 4.8311 -2.8487 -0.0023 34 1 8.4984 -3.1159 -1.4443 35 1 6.8474 -3.4273 -2.0315 36 1 7.4360 -1.7546 -1.8770 37 1 6.3143 -5.0716 -1.1961 38 1 6.0617 -6.0204 0.2889 39 1 5.0160 -4.6241 -0.0636 40 1 9.0448 -3.9006 0.5367 41 1 8.4948 -5.2025 2.5138 42 1 7.9068 -6.4737 1.4155 43 1 9.9021 -7.4623 2.9331 44 1 11.7770 -9.7135 4.5323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570592882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = -53.792070 kcal Electronic energy + Delta-G solvation = -26170.311107 eV Core-core repulsion = 22248.395682 eV Total energy + Delta-G solvation = -3921.915425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45145 -40.56710 -40.10300 -38.52978 -36.07084 -35.41721 -33.46698 -33.24868 -32.16840 -30.29356 -29.48915 -28.13731 -26.19964 -25.70792 -24.75449 -22.91762 -21.15321 -21.06608 -20.54193 -19.91656 -19.54101 -18.28980 -17.55455 -17.31469 -16.86727 -16.68021 -16.46706 -16.27257 -15.85756 -15.69138 -15.48559 -15.29659 -15.12133 -14.49906 -14.48626 -14.25751 -13.78203 -13.53396 -13.44069 -13.39622 -13.25428 -13.10647 -13.09169 -12.84442 -12.68840 -12.56864 -12.42438 -12.12364 -11.98251 -11.71915 -11.49471 -11.44034 -10.81880 -10.66578 -10.36776 -10.27233 -10.00840 -9.94070 -9.39191 -8.46116 -5.94648 -0.87058 0.08120 0.45841 1.31076 1.40203 1.42182 1.52840 1.82615 2.02282 2.06444 2.30028 2.93209 3.07967 3.21279 3.46431 3.56278 3.70760 3.90274 3.95317 4.14973 4.17558 4.30553 4.42926 4.46258 4.57778 4.60713 4.62953 4.67078 4.74200 4.79418 4.90600 4.94159 5.01598 5.16059 5.22284 5.33693 5.41458 5.48317 5.87108 6.08020 6.25012 6.31913 6.52833 6.60829 6.94252 7.13317 7.57132 8.12585 8.70959 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.001762 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.374821 B =15887.228080 C =16300.896317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.062 3.938 3 N -0.509 5.509 4 C 0.119 3.881 5 C -0.324 4.324 6 C 0.597 3.403 7 O -0.565 6.565 8 N -0.703 5.703 9 C 0.149 3.851 10 H 0.073 0.927 11 C -0.151 4.151 12 C 0.081 3.919 13 H 0.060 0.940 14 C -0.144 4.144 15 N -0.667 5.667 16 C 0.066 3.934 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.272 1.272 28 S 0.224 5.776 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.344 0.656 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.652 12.804 -5.499 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.211 4.211 3 N -0.225 5.225 4 C -0.040 4.040 5 C -0.449 4.449 6 C 0.383 3.617 7 O -0.446 6.446 8 N -0.356 5.356 9 C 0.044 3.956 10 H 0.091 0.909 11 C -0.209 4.209 12 C -0.029 4.029 13 H 0.078 0.922 14 C -0.202 4.202 15 N -0.300 5.300 16 C -0.067 4.067 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.197 1.197 28 S 0.481 5.519 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.199 0.801 33 H 0.248 0.752 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.178 12.399 -6.409 30.552 hybrid contribution 1.468 0.661 1.169 1.990 sum -25.710 13.060 -5.239 29.309 Atomic orbital electron populations 1.20817 0.81865 1.06122 1.05844 1.28260 1.03924 0.90808 0.98144 1.66316 1.04636 1.32464 1.19068 1.22256 0.91225 0.95795 0.94709 1.25624 0.98280 0.98817 1.22151 1.16955 0.86444 0.82648 0.75620 1.90840 1.45766 1.56179 1.51791 1.45878 1.09244 1.05901 1.74596 1.20959 0.82176 0.94429 0.98067 0.90924 1.22048 1.02420 1.01251 0.95220 1.21765 0.89792 0.92293 0.99045 0.92159 1.21917 0.97492 0.99470 1.01322 1.60226 1.03373 1.17100 1.49320 1.21594 0.93323 0.97315 0.94428 1.20868 0.90491 0.82609 0.83513 1.90499 1.60491 1.62553 1.37319 1.41917 1.13609 1.35761 1.29742 1.19631 0.90767 1.20496 1.15547 0.90347 1.26018 1.03655 0.96570 0.94963 1.69660 1.38243 1.30077 1.18061 0.85003 0.77245 0.78006 0.78173 1.19834 1.19477 1.19726 1.83579 0.93846 1.09728 1.64729 0.87290 0.87169 0.88515 0.80050 0.75168 0.91299 0.90834 0.93672 0.91676 0.91901 0.90379 0.83662 0.91646 0.87316 0.76947 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 10.46 71.23 0.75 0.45 16 2 C 0.06 0.72 7.39 88.46 0.65 1.38 16 3 N -0.51 -9.11 10.51 -190.30 -2.00 -11.11 16 4 C 0.12 2.33 11.09 84.23 0.93 3.27 16 5 C -0.32 -6.01 6.48 23.88 0.15 -5.86 16 6 C 0.60 13.77 7.75 86.45 0.67 14.44 16 7 O -0.57 -17.60 16.53 -4.30 -0.07 -17.67 16 8 N -0.70 -12.97 4.98 -446.50 -2.23 -15.19 16 9 C 0.15 3.27 2.30 44.99 0.10 3.38 16 10 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 11 C -0.15 -3.54 9.02 71.98 0.65 -2.89 16 12 C 0.08 1.71 2.66 44.92 0.12 1.83 16 13 H 0.06 1.18 7.80 -2.39 -0.02 1.16 16 14 C -0.14 -2.45 8.93 71.98 0.64 -1.81 16 15 N -0.67 -19.67 5.14 -495.57 -2.55 -22.21 16 16 C 0.07 2.14 5.97 85.56 0.51 2.65 16 17 C 0.44 20.45 7.82 87.66 0.69 21.14 16 18 O -0.62 -34.14 15.78 -3.06 -0.05 -34.19 16 19 N -0.57 -29.08 5.29 -306.98 -1.62 -30.70 16 20 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 24 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 S 0.22 2.29 22.31 -56.49 -1.26 1.03 16 29 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.41 5.27 5.76 -92.71 -0.53 4.74 16 34 H 0.07 1.84 7.17 -2.39 -0.02 1.83 16 35 H 0.07 1.51 6.56 -2.39 -0.02 1.50 16 36 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.06 1.22 6.57 -2.39 -0.02 1.21 16 38 H 0.06 1.12 7.45 -2.39 -0.02 1.10 16 39 H 0.08 0.83 6.29 -2.39 -0.02 0.81 16 40 H 0.34 11.14 7.61 -89.70 -0.68 10.45 16 41 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 42 H 0.11 3.11 7.44 -2.39 -0.02 3.09 16 43 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 44 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -74.81 381.78 -1.19 -76.00 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.88 Total: 38.50 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 7.15 Total: 19.64 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -8.11 Total: -128.23 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -0.12 Total: -51.86 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.26 Total: 1.03 kcal Total: -74.81 -1.19 -76.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570592882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.205 kcal (2) G-P(sol) polarization free energy of solvation -74.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds