Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46838 * 2 1 4 4 C 1.50697 * 109.47037 * 240.00487 * 2 1 3 5 5 H 1.08000 * 120.00174 * 240.00265 * 4 2 1 6 6 C 1.37879 * 120.00194 * 59.99831 * 4 2 1 7 7 N 1.31512 * 120.00252 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00023 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47074 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47029 * 119.99828 * 8 6 4 11 11 H 1.48497 * 109.47141 * 239.99932 * 8 6 4 12 12 C 1.52991 * 109.47244 * 120.00077 * 2 1 3 13 13 S 1.81400 * 109.47496 * 300.00248 * 12 2 1 14 14 O 1.42106 * 110.54259 * 68.37349 * 13 12 2 15 15 O 1.42100 * 110.53845 * 291.62549 * 13 12 2 16 16 N 1.65599 * 104.45258 * 180.02562 * 13 12 2 17 17 C 1.46498 * 119.99891 * 64.99641 * 16 13 12 18 18 C 1.53006 * 109.46726 * 165.00115 * 17 16 13 19 19 H 1.09005 * 109.50359 * 54.92657 * 18 17 16 20 20 C 1.53034 * 109.50361 * 294.80144 * 18 17 16 21 21 N 1.46850 * 109.52128 * 180.87877 * 20 18 17 22 22 C 1.46843 * 111.19721 * 61.74755 * 21 20 18 23 23 C 1.53044 * 109.52357 * 298.25541 * 22 21 20 24 24 C 1.53118 * 109.27700 * 59.17656 * 23 22 21 25 25 F 1.39898 * 109.52247 * 182.44247 * 24 23 22 26 26 F 1.39904 * 109.57431 * 62.28495 * 24 23 22 27 27 H 1.09000 * 109.47040 * 299.99508 * 1 2 3 28 28 H 1.08999 * 109.47546 * 59.99652 * 1 2 3 29 29 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47336 * 300.00476 * 3 2 1 32 32 H 1.09000 * 109.46904 * 60.00408 * 3 2 1 33 33 H 0.96997 * 120.00845 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47406 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47447 * 60.00215 * 12 2 1 36 36 H 0.97001 * 119.99343 * 244.99922 * 16 13 12 37 37 H 1.08995 * 109.47463 * 45.00551 * 17 16 13 38 38 H 1.09000 * 109.47136 * 285.00116 * 17 16 13 39 39 H 1.08991 * 109.46459 * 300.90256 * 20 18 17 40 40 H 1.08999 * 109.46205 * 60.86969 * 20 18 17 41 41 H 1.00899 * 110.99614 * 185.84075 * 21 20 18 42 42 H 1.08996 * 109.46328 * 178.23828 * 22 21 20 43 43 H 1.09002 * 109.45509 * 58.26527 * 22 21 20 44 44 H 1.09001 * 109.50313 * 299.23789 * 23 22 21 45 45 H 1.08996 * 109.50375 * 179.11541 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1660 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 6 2.0400 -0.7212 1.2491 13 16 1.4354 0.1338 2.7304 14 8 0.0280 -0.0185 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0542 -0.7401 3.9936 17 6 3.5027 -0.7964 4.2052 18 6 3.7925 -1.3323 5.6088 19 1 3.2955 -2.2934 5.7412 20 6 3.2738 -0.3398 6.6518 21 7 3.5705 -0.8438 7.9989 22 6 5.0177 -0.9768 8.2092 23 6 5.5886 -1.9883 7.2126 24 6 5.3030 -1.5092 5.7866 25 9 5.7736 -2.4574 4.8719 26 9 5.9462 -0.2867 5.5652 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7080 1.1611 -3.4843 34 1 3.1301 -0.7208 1.2494 35 1 1.6768 -1.7489 1.2492 36 1 1.4575 -1.2148 4.5932 37 1 3.9238 0.2039 4.1042 38 1 3.9529 -1.4567 3.4640 39 1 3.7611 0.6246 6.5093 40 1 2.1963 -0.2225 6.5372 41 1 3.1551 -0.2547 8.7049 42 1 5.2067 -1.3221 9.2256 43 1 5.4968 -0.0092 8.0593 44 1 5.1197 -2.9595 7.3709 45 1 6.6652 -2.0751 7.3586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575297362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = -202.586866 kcal Electronic energy + Delta-G solvation = -29556.217732 eV Core-core repulsion = 25177.160895 eV Total energy + Delta-G solvation = -4379.056838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.05442 -48.03227 -39.40403 -38.13707 -38.12388 -36.94313 -36.51744 -33.64174 -32.31014 -32.05177 -28.32863 -27.69359 -27.27154 -26.75784 -24.72217 -23.23012 -21.45655 -21.15433 -20.31924 -18.99218 -18.43752 -18.00808 -17.83394 -17.39343 -17.05629 -16.99304 -16.78848 -16.58739 -16.30124 -15.73926 -15.07029 -14.92660 -14.77568 -14.68523 -14.59454 -14.43114 -14.32394 -13.99085 -13.84217 -13.66468 -13.26164 -13.17378 -13.08854 -13.01420 -12.91500 -12.80913 -12.73743 -12.51687 -12.30934 -12.18901 -12.13471 -12.12697 -11.96036 -11.57404 -11.40954 -11.31007 -10.72899 -10.42762 -10.37721 -9.55357 -8.03880 -6.22344 -0.64054 1.42258 1.45383 1.54979 1.81015 2.43574 2.68684 2.80328 2.98633 3.03026 3.17691 3.19735 3.35872 3.44861 3.74470 3.86900 4.00990 4.11020 4.16543 4.25361 4.34313 4.45629 4.50037 4.56172 4.59643 4.60568 4.81616 4.85798 4.86523 4.91305 4.92024 4.98900 5.05905 5.08455 5.38305 5.50634 5.64439 5.84717 5.97548 6.06192 6.11565 6.33878 6.36892 6.82630 7.46037 8.96144 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003169 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.618051 B = 8834.409753 C = 9724.952288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.284 1.284 12 C -0.589 4.589 13 S 2.617 3.383 14 O -0.987 6.987 15 O -0.989 6.989 16 N -1.107 6.107 17 C 0.108 3.892 18 C -0.123 4.123 19 H 0.134 0.866 20 C 0.058 3.942 21 N -0.687 5.687 22 C 0.055 3.945 23 C -0.150 4.150 24 C 0.281 3.719 25 F -0.206 7.206 26 F -0.210 7.210 27 H 0.033 0.967 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.261 0.739 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.427 0.573 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.097 0.903 41 H 0.363 0.637 42 H 0.114 0.886 43 H 0.036 0.964 44 H 0.116 0.884 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.258 -6.830 23.129 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.210 1.210 12 C -0.722 4.722 13 S 2.714 3.286 14 O -0.977 6.977 15 O -0.979 6.979 16 N -0.868 5.868 17 C -0.019 4.019 18 C -0.144 4.144 19 H 0.152 0.848 20 C -0.072 4.072 21 N -0.320 5.320 22 C -0.075 4.075 23 C -0.188 4.188 24 C 0.244 3.756 25 F -0.187 7.187 26 F -0.191 7.191 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.264 0.736 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.183 0.817 42 H 0.132 0.868 43 H 0.054 0.946 44 H 0.134 0.866 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.699 -6.478 22.803 24.924 hybrid contribution 0.695 0.158 -1.439 1.606 sum 8.393 -6.320 21.364 23.808 Atomic orbital electron populations 1.22204 0.97595 1.00573 1.01392 1.17925 0.92453 0.92113 0.90870 1.22205 0.99733 0.98407 1.01407 1.21335 1.31585 1.12266 0.90468 0.91961 1.25674 0.95192 0.95666 1.01665 1.69944 1.37184 1.23709 1.23792 0.85563 0.78051 0.78723 0.79627 1.19024 1.20872 1.20981 1.30479 1.12414 1.13604 1.15686 1.04640 0.73492 0.74783 0.75673 1.93521 1.31017 1.86991 1.86153 1.93509 1.78486 1.40010 1.85897 1.55269 1.14204 1.70891 1.46454 1.21415 0.80244 1.02688 0.97539 1.22392 0.92908 1.04158 0.94918 0.84816 1.21935 1.02333 0.94615 0.88282 1.60312 1.12037 1.56154 1.03496 1.21986 0.87611 0.97450 1.00419 1.22645 1.04603 1.02536 0.89031 1.21494 0.90406 0.73378 0.90292 1.93012 1.90291 1.65157 1.70269 1.92992 1.84011 1.46234 1.95893 0.94782 0.91059 0.94015 0.94276 0.91069 0.94741 0.92922 0.84884 0.84272 0.73611 0.90648 0.89823 0.94700 0.88505 0.81668 0.86783 0.94616 0.86608 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.92 7.77 71.98 0.56 -7.36 16 2 C 0.07 3.31 0.52 -52.93 -0.03 3.28 16 3 C -0.16 -7.97 7.77 71.98 0.56 -7.41 16 4 C -0.52 -27.11 8.01 25.60 0.21 -26.90 16 5 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.93 5.15 84.66 0.44 1.36 16 7 N -0.91 -50.48 9.35 21.45 0.20 -50.28 16 8 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C -0.59 -22.15 5.01 71.98 0.36 -21.79 16 13 S 2.62 91.70 4.49 -56.49 -0.25 91.44 16 14 O -0.99 -39.31 15.70 -127.65 -2.00 -41.32 16 15 O -0.99 -40.29 15.11 -127.65 -1.93 -42.22 16 16 N -1.11 -26.36 5.43 -187.49 -1.02 -27.37 16 17 C 0.11 2.41 5.27 86.38 0.46 2.86 16 18 C -0.12 -2.08 2.02 -10.74 -0.02 -2.10 16 19 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 20 C 0.06 0.91 5.60 86.32 0.48 1.39 16 21 N -0.69 -7.64 6.85 -514.02 -3.52 -11.16 16 22 C 0.05 0.53 6.44 86.33 0.56 1.08 16 23 C -0.15 -1.68 5.62 30.65 0.17 -1.51 16 24 C 0.28 5.02 1.65 30.67 0.05 5.07 16 25 F -0.21 -4.35 16.57 44.97 0.75 -3.60 16 26 F -0.21 -4.70 15.72 44.97 0.71 -4.00 16 27 H 0.03 1.60 5.46 -2.39 -0.01 1.58 16 28 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 32 H 0.03 1.63 5.46 -2.39 -0.01 1.62 16 33 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 34 H 0.13 4.51 8.14 -2.39 -0.02 4.49 16 35 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 36 H 0.43 7.88 8.35 -96.75 -0.81 7.07 16 37 H 0.08 1.92 7.45 -2.39 -0.02 1.90 16 38 H 0.08 1.75 7.74 -2.39 -0.02 1.73 16 39 H 0.03 0.64 7.88 -2.39 -0.02 0.63 16 40 H 0.10 1.46 7.58 -2.39 -0.02 1.44 16 41 H 0.36 2.88 8.90 -89.69 -0.80 2.09 16 42 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.04 0.42 7.88 -2.39 -0.02 0.40 16 44 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -68.90 360.95 -1.84 -70.73 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -0.58 Total: 25.32 kcal Atomic # 6 Polarization: -55.82 SS G_CDS: 3.79 Total: -52.03 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -4.34 Total: -88.81 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -3.93 Total: -83.53 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 1.45 Total: -7.60 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 91.70 SS G_CDS: -0.25 Total: 91.44 kcal Total: -68.90 -1.84 -70.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575297362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.854 kcal (2) G-P(sol) polarization free energy of solvation -68.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds