Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.50703 * 109.47302 * 184.99961 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00223 * 5 3 2 7 7 C 1.37878 * 119.99838 * 60.00134 * 5 3 2 8 8 N 1.31516 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99954 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47307 * 90.00070 * 9 7 5 11 11 H 1.48501 * 109.47011 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47091 * 329.99497 * 9 7 5 13 13 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 14 14 C 1.34777 * 119.99873 * 275.00296 * 13 3 2 15 15 O 1.21592 * 119.99797 * 359.97438 * 14 13 3 16 16 C 1.47596 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.40200 * 119.84047 * 0.02562 * 16 14 13 18 18 C 1.36276 * 120.33427 * 179.97438 * 17 16 14 19 19 C 1.39708 * 119.97423 * 0.02562 * 18 17 16 20 20 C 1.40747 * 120.25141 * 0.02562 * 19 18 17 21 21 C 1.38729 * 119.45191 * 359.72214 * 20 19 18 22 22 N 1.37909 * 107.35258 * 180.02562 * 20 19 18 23 23 H 0.97003 * 124.93119 * 180.02562 * 22 20 19 24 24 C 1.36266 * 110.14360 * 359.97438 * 22 20 19 25 25 C 1.35689 * 109.80571 * 0.02562 * 24 22 20 26 26 C 1.48308 * 126.63042 * 179.97438 * 25 24 22 27 27 N 1.33730 * 126.31541 * 180.02562 * 26 25 24 28 28 N 1.28568 * 109.84774 * 179.97438 * 27 26 25 29 29 N 1.28922 * 109.73625 * 359.97438 * 28 27 26 30 30 H 0.97000 * 126.42568 * 180.02562 * 29 28 27 31 31 N 1.32047 * 126.31723 * 359.70726 * 26 25 24 32 32 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 33 33 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 34 34 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 36 36 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 37 37 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 38 38 H 0.96995 * 120.00050 * 94.72411 * 13 3 2 39 39 H 1.08006 * 119.83761 * 359.97438 * 17 16 14 40 40 H 1.07997 * 120.00841 * 180.02562 * 18 17 16 41 41 H 1.07996 * 120.17105 * 180.27274 * 21 20 19 42 42 H 1.07989 * 125.09781 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6325 0.4318 16 6 0.0444 3.3237 2.6284 17 6 0.9425 3.3590 3.7044 18 6 0.5924 3.9656 4.8735 19 6 -0.6671 4.5558 5.0037 20 6 -1.5783 4.5264 3.9314 21 6 -1.2130 3.9117 2.7426 22 7 -2.7212 5.1781 4.3448 23 1 -3.5151 5.3054 3.8021 24 6 -2.5739 5.6163 5.6267 25 6 -1.3465 5.2726 6.0918 26 6 -0.7968 5.5643 7.4381 27 7 0.4146 5.2228 7.8899 28 7 0.5613 5.6339 9.0992 29 7 -0.5075 6.2431 9.4846 30 1 -0.6582 6.6484 10.3529 31 7 -1.4111 6.2142 8.4096 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.8293 -0.0618 -2.9495 38 1 2.2704 2.1197 1.9991 39 1 1.9167 2.9031 3.6065 40 1 1.2885 3.9900 5.6989 41 1 -1.9014 3.8862 1.9109 42 1 -3.3216 6.1568 6.1878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590420280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = 142.976481 kcal Electronic energy + Delta-G solvation = -27953.732667 eV Core-core repulsion = 23937.198567 eV Total energy + Delta-G solvation = -4016.534100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.37209 -41.49616 -39.17050 -36.63822 -35.00026 -34.30451 -33.20652 -32.39976 -31.66829 -31.01285 -29.54233 -29.04582 -26.88109 -24.96891 -23.92550 -23.52086 -22.65362 -22.47569 -20.42713 -20.15675 -19.33909 -18.99430 -18.19737 -17.19423 -16.73255 -16.21200 -15.71099 -15.42452 -14.95805 -14.88032 -14.71621 -14.35975 -14.26529 -13.92029 -13.66548 -13.48863 -12.99101 -12.64501 -12.42968 -12.20034 -12.01886 -11.66840 -11.57867 -11.34045 -11.22798 -11.19479 -11.03954 -10.96798 -10.89869 -10.78272 -10.28435 -10.14021 -9.65149 -9.58039 -9.08279 -8.99353 -8.46685 -8.41522 -7.91006 -7.73803 -6.09056 -4.18118 0.50617 0.85389 1.29714 1.76940 1.86333 2.68423 2.75172 3.27613 3.34592 3.36969 3.45578 3.58057 3.97946 4.11004 4.24467 4.40543 4.49075 4.68103 4.97963 5.07920 5.19856 5.22554 5.32128 5.44547 5.45518 5.59044 5.62106 6.02355 6.23244 6.31417 6.36444 6.43438 6.50663 6.51729 6.56719 6.70563 6.95562 7.09262 7.11998 7.24059 7.40229 7.48118 7.66116 7.77560 7.92179 7.94069 8.21541 8.69892 8.81053 9.15150 9.49082 10.96272 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002414 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.790741 B =11597.445890 C =12859.752904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.699 5.699 14 C 0.543 3.457 15 O -0.548 6.548 16 C -0.099 4.099 17 C -0.105 4.105 18 C -0.075 4.075 19 C -0.058 4.058 20 C 0.080 3.920 21 C -0.066 4.066 22 N -0.577 5.577 23 H 0.424 0.576 24 C 0.126 3.874 25 C -0.129 4.129 26 C 0.298 3.702 27 N -0.294 5.294 28 N 0.009 4.991 29 N -0.304 5.304 30 H 0.468 0.532 31 N -0.310 5.310 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.099 0.901 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.389 0.611 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 11.473 20.730 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.329 3.671 15 O -0.428 6.428 16 C -0.104 4.104 17 C -0.125 4.125 18 C -0.093 4.093 19 C -0.063 4.063 20 C -0.024 4.024 21 C -0.087 4.087 22 N -0.179 5.179 23 H 0.263 0.737 24 C -0.010 4.010 25 C -0.141 4.141 26 C 0.017 3.983 27 N -0.172 5.172 28 N 0.013 4.987 29 N -0.150 5.150 30 H 0.322 0.678 31 N -0.154 5.154 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.223 0.777 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.375 11.361 20.212 26.282 hybrid contribution 0.435 0.366 0.397 0.694 sum -11.940 11.727 20.609 26.548 Atomic orbital electron populations 1.21845 0.98371 0.98027 1.01250 1.21939 0.92624 0.99752 1.02343 1.18824 0.94261 0.89206 0.80883 0.93157 1.21236 0.90677 1.38950 1.06292 0.92009 1.24880 0.98574 0.94834 0.95381 1.69899 1.35086 1.37626 1.09376 0.86461 0.84932 0.78473 0.77329 1.20559 1.21142 1.19814 1.46454 1.14404 1.55285 1.18527 1.18023 0.83027 0.79377 0.86670 1.90740 1.51584 1.60415 1.40052 1.19993 0.94289 1.00734 0.95337 1.20953 0.99572 0.99582 0.92343 1.20299 0.94483 0.96592 0.97969 1.18838 0.94764 1.00977 0.91700 1.18025 0.87339 1.01147 0.95900 1.20099 0.96604 0.97271 0.94730 1.41666 1.15339 1.48300 1.12568 0.73737 1.21822 0.96977 0.97513 0.84665 1.16973 0.95521 1.12624 0.88970 1.22655 0.88746 0.93137 0.93735 1.75530 1.17568 1.22250 1.01851 1.78368 1.09260 1.03975 1.07123 1.50949 1.08106 1.40351 1.15616 0.67813 1.78845 1.15666 1.25130 0.95796 0.94211 0.93166 0.95890 0.88253 0.94959 0.92603 0.77728 0.84945 0.84500 0.84474 0.80017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.61 11.29 55.43 0.63 -23.99 16 9 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.70 -14.53 4.97 -55.95 -0.28 -14.81 16 14 C 0.54 10.89 6.33 -12.44 -0.08 10.81 16 15 O -0.55 -12.61 13.45 5.28 0.07 -12.54 16 16 C -0.10 -1.59 5.87 -104.96 -0.62 -2.21 16 17 C -0.10 -1.47 9.46 -39.55 -0.37 -1.84 16 18 C -0.07 -0.98 10.03 -39.74 -0.40 -1.38 16 19 C -0.06 -0.73 6.36 -104.87 -0.67 -1.40 16 20 C 0.08 0.96 7.25 -84.00 -0.61 0.35 16 21 C -0.07 -0.93 9.61 -39.01 -0.37 -1.30 16 22 N -0.58 -4.62 6.04 -10.48 -0.06 -4.69 16 23 H 0.42 2.01 8.96 -40.82 -0.37 1.64 16 24 C 0.13 0.98 11.77 -16.49 -0.19 0.78 16 25 C -0.13 -1.41 6.29 -103.14 -0.65 -2.06 16 26 C 0.30 3.37 8.18 -156.42 -1.28 2.09 16 27 N -0.29 -3.60 11.97 32.11 0.38 -3.22 16 28 N 0.01 0.09 13.42 60.35 0.81 0.90 16 29 N -0.30 -2.20 8.44 60.35 0.51 -1.70 16 30 H 0.47 1.17 8.96 -331.91 -2.98 -1.80 16 31 N -0.31 -2.94 12.90 32.12 0.41 -2.52 16 32 H 0.04 0.87 5.65 -51.93 -0.29 0.57 16 33 H 0.05 1.19 7.84 -51.93 -0.41 0.78 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.39 7.06 6.54 -40.82 -0.27 6.80 16 39 H 0.13 1.68 6.36 -52.48 -0.33 1.34 16 40 H 0.14 1.68 7.68 -52.49 -0.40 1.27 16 41 H 0.14 1.90 7.62 -52.49 -0.40 1.50 16 42 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -33.83 358.23 -9.72 -43.55 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.96 Total: 6.19 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -5.62 Total: -8.17 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 2.40 Total: -50.01 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.83 -9.72 -43.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.530 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds