Wall clock time and date at job start Sat Apr 11 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47021 * 2 1 4 4 H 1.09000 * 109.47516 * 304.99868 * 3 2 1 5 5 C 1.50703 * 109.47302 * 184.99961 * 3 2 1 6 6 H 1.08004 * 120.00026 * 240.00223 * 5 3 2 7 7 C 1.37878 * 119.99838 * 60.00134 * 5 3 2 8 8 N 1.31516 * 119.99766 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99954 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47307 * 90.00070 * 9 7 5 11 11 H 1.48501 * 109.47011 * 209.99946 * 9 7 5 12 12 H 1.48497 * 109.47091 * 329.99497 * 9 7 5 13 13 N 1.46506 * 109.47262 * 65.00206 * 3 2 1 14 14 C 1.34777 * 119.99873 * 275.00296 * 13 3 2 15 15 O 1.21592 * 119.99797 * 359.97438 * 14 13 3 16 16 C 1.47596 * 120.00061 * 179.97438 * 14 13 3 17 17 C 1.40200 * 119.84047 * 0.02562 * 16 14 13 18 18 C 1.36276 * 120.33427 * 179.97438 * 17 16 14 19 19 C 1.39708 * 119.97423 * 0.02562 * 18 17 16 20 20 C 1.40747 * 120.25141 * 0.02562 * 19 18 17 21 21 C 1.38729 * 119.45191 * 359.72214 * 20 19 18 22 22 N 1.37909 * 107.35258 * 180.02562 * 20 19 18 23 23 H 0.97003 * 124.93119 * 180.02562 * 22 20 19 24 24 C 1.36266 * 110.14360 * 359.97438 * 22 20 19 25 25 C 1.35689 * 109.80571 * 0.02562 * 24 22 20 26 26 C 1.48308 * 126.63042 * 179.97438 * 25 24 22 27 27 N 1.33730 * 126.31541 * 180.02562 * 26 25 24 28 28 N 1.28568 * 109.84774 * 179.97438 * 27 26 25 29 29 N 1.28922 * 109.73625 * 359.97438 * 28 27 26 30 30 H 0.97000 * 126.42568 * 180.02562 * 29 28 27 31 31 N 1.32047 * 126.31723 * 359.70726 * 26 25 24 32 32 H 1.09004 * 109.46916 * 299.99584 * 1 2 3 33 33 H 1.08997 * 109.47126 * 60.00157 * 1 2 3 34 34 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47425 * 240.00169 * 2 1 3 36 36 H 1.09004 * 109.47481 * 119.99840 * 2 1 3 37 37 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 38 38 H 0.96995 * 120.00050 * 94.72411 * 13 3 2 39 39 H 1.08006 * 119.83761 * 359.97438 * 17 16 14 40 40 H 1.07997 * 120.00841 * 180.02562 * 18 17 16 41 41 H 1.07996 * 120.17105 * 180.27274 * 21 20 19 42 42 H 1.07989 * 125.09781 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1728 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6890 13 7 1.6524 2.0975 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6325 0.4318 16 6 0.0444 3.3237 2.6284 17 6 0.9425 3.3590 3.7044 18 6 0.5924 3.9656 4.8735 19 6 -0.6671 4.5558 5.0037 20 6 -1.5783 4.5264 3.9314 21 6 -1.2130 3.9117 2.7426 22 7 -2.7212 5.1781 4.3448 23 1 -3.5151 5.3054 3.8021 24 6 -2.5739 5.6163 5.6267 25 6 -1.3465 5.2726 6.0918 26 6 -0.7968 5.5643 7.4381 27 7 0.4146 5.2228 7.8899 28 7 0.5613 5.6339 9.0992 29 7 -0.5075 6.2431 9.4846 30 1 -0.6582 6.6484 10.3529 31 7 -1.4111 6.2142 8.4096 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.8293 -0.0618 -2.9495 38 1 2.2704 2.1197 1.9991 39 1 1.9167 2.9031 3.6065 40 1 1.2885 3.9900 5.6989 41 1 -1.9014 3.8862 1.9109 42 1 -3.3216 6.1568 6.1878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590420280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:05 Heat of formation + Delta-G solvation = 118.971697 kcal Electronic energy + Delta-G solvation = -27954.773593 eV Core-core repulsion = 23937.198567 eV Total energy + Delta-G solvation = -4017.575026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.10262 -42.38071 -40.71879 -37.80122 -36.82092 -35.05473 -34.29787 -33.93835 -32.93741 -32.49261 -30.61671 -30.07614 -28.74367 -25.70837 -25.36320 -24.54478 -24.06659 -23.55039 -21.85665 -21.15993 -21.01357 -19.81783 -19.32481 -18.52058 -17.47656 -17.46225 -17.28941 -16.91826 -16.35898 -16.24246 -15.75117 -15.57600 -15.37014 -15.05362 -14.71886 -14.68785 -14.54430 -14.22194 -13.86483 -13.48584 -13.20114 -13.13802 -12.91293 -12.87728 -12.66878 -12.57887 -12.34188 -12.16629 -12.13674 -12.02650 -11.79462 -11.77047 -11.55932 -11.01930 -10.74006 -10.56988 -10.49269 -9.65123 -9.34462 -8.75141 -8.13186 -6.29961 -0.26387 -0.12654 0.34526 0.90062 1.31217 1.47155 1.47592 1.58091 1.83493 1.93443 2.24085 2.39613 2.67732 2.87505 2.99357 3.16479 3.23172 3.66051 3.86311 3.99071 4.18653 4.23389 4.32076 4.43591 4.52805 4.57761 4.60756 4.63964 4.75396 4.79502 4.99996 5.10880 5.26245 5.33641 5.43069 5.46879 5.50776 5.54212 5.59428 5.65142 5.78854 5.82929 5.94917 5.99482 6.19937 6.49174 6.77399 7.01062 7.18428 7.36079 7.57981 8.92203 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002414 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.790741 B =11597.445890 C =12859.752904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.699 5.699 14 C 0.544 3.456 15 O -0.585 6.585 16 C -0.127 4.127 17 C -0.105 4.105 18 C -0.078 4.078 19 C -0.062 4.062 20 C 0.075 3.925 21 C -0.059 4.059 22 N -0.560 5.560 23 H 0.443 0.557 24 C 0.166 3.834 25 C -0.161 4.161 26 C 0.288 3.712 27 N -0.328 5.328 28 N 0.000 5.000 29 N -0.276 5.276 30 H 0.487 0.513 31 N -0.306 5.306 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.265 0.735 38 H 0.402 0.598 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.135 0.865 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 12.902 23.581 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.347 5.347 14 C 0.332 3.668 15 O -0.468 6.468 16 C -0.131 4.131 17 C -0.125 4.125 18 C -0.097 4.097 19 C -0.068 4.068 20 C -0.031 4.031 21 C -0.081 4.081 22 N -0.163 5.163 23 H 0.285 0.715 24 C 0.029 3.971 25 C -0.172 4.172 26 C 0.008 3.992 27 N -0.206 5.206 28 N 0.004 4.996 29 N -0.127 5.127 30 H 0.345 0.655 31 N -0.151 5.151 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.238 0.762 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -13.355 12.809 23.108 29.605 hybrid contribution 0.567 0.067 -0.324 0.656 sum -12.788 12.876 22.785 29.129 Atomic orbital electron populations 1.21678 0.96961 0.99140 1.00288 1.21790 0.93812 0.99083 1.01338 1.18413 0.93713 0.89221 0.81177 0.98092 1.21573 0.91389 1.38900 1.06703 0.91117 1.25745 1.03216 0.94409 0.95012 1.70048 1.36971 1.38336 1.09876 0.85389 0.79255 0.78849 0.77112 1.19693 1.21252 1.18989 1.46209 1.15340 1.55566 1.17614 1.18582 0.82042 0.78485 0.87663 1.90708 1.52482 1.61807 1.41819 1.19610 0.96055 1.03379 0.94064 1.20950 0.99520 0.99874 0.92144 1.20360 0.95148 0.96572 0.97595 1.19151 0.94624 1.00294 0.92687 1.17835 0.88812 1.01520 0.94887 1.20067 0.95773 0.96714 0.95505 1.41714 1.14822 1.46842 1.12908 0.71529 1.22483 0.96341 0.94491 0.83769 1.17099 0.96724 1.14406 0.89001 1.22717 0.88709 0.93627 0.94188 1.75504 1.18628 1.23706 1.02730 1.78313 1.09970 1.04497 1.06803 1.50981 1.07006 1.38729 1.16012 0.65457 1.78783 1.15739 1.24798 0.95753 0.93885 0.95355 0.93581 0.90827 0.94124 0.92617 0.76200 0.84330 0.83952 0.84731 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.53 2.24 44.24 0.10 14.62 16 4 H 0.00 0.07 7.58 -2.39 -0.02 0.06 16 5 C -0.55 -29.36 8.73 25.60 0.22 -29.13 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -52.58 11.29 21.45 0.24 -52.34 16 9 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 N -0.70 -30.10 4.97 -449.19 -2.23 -32.33 16 14 C 0.54 22.67 6.33 86.71 0.55 23.22 16 15 O -0.59 -28.30 13.45 -4.01 -0.05 -28.36 16 16 C -0.13 -4.15 5.87 -20.08 -0.12 -4.27 16 17 C -0.11 -2.96 9.46 22.29 0.21 -2.75 16 18 C -0.08 -2.01 10.03 22.17 0.22 -1.79 16 19 C -0.06 -1.48 6.36 -20.03 -0.13 -1.61 16 20 C 0.08 1.66 7.25 38.92 0.28 1.95 16 21 C -0.06 -1.66 9.61 22.64 0.22 -1.44 16 22 N -0.56 -7.06 6.04 -187.07 -1.13 -8.19 16 23 H 0.44 2.51 8.96 -92.71 -0.83 1.68 16 24 C 0.17 1.88 11.77 83.41 0.98 2.86 16 25 C -0.16 -3.10 6.29 -18.91 -0.12 -3.22 16 26 C 0.29 5.87 8.18 137.35 1.12 6.99 16 27 N -0.33 -7.61 11.97 -52.32 -0.63 -8.24 16 28 N 0.00 0.01 13.42 37.02 0.50 0.50 16 29 N -0.28 -3.31 8.44 37.02 0.31 -2.99 16 30 H 0.49 1.06 8.96 -340.34 -3.05 -1.99 16 31 N -0.31 -4.88 12.90 -52.28 -0.67 -5.55 16 32 H 0.04 1.92 5.65 -2.39 -0.01 1.91 16 33 H 0.03 1.38 7.84 -2.39 -0.02 1.37 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.07 4.10 5.95 -2.39 -0.01 4.09 16 36 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 38 H 0.40 14.95 6.54 -92.71 -0.61 14.35 16 39 H 0.14 3.56 6.36 -2.91 -0.02 3.54 16 40 H 0.14 3.45 7.68 -2.91 -0.02 3.43 16 41 H 0.13 3.75 7.62 -2.91 -0.02 3.73 16 42 H 0.23 0.56 8.06 -2.92 -0.02 0.54 16 Total: -1.00 -76.45 358.23 -0.21 -76.67 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -3.35 Total: 20.44 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 4.77 Total: -4.21 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -3.61 Total: -109.14 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.36 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -76.45 -0.21 -76.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590420280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.637 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds