Wall clock time and date at job start Sat Apr 11 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47080 * 120.00157 * 2 1 3 5 5 N 1.46499 * 109.47096 * 64.99770 * 4 2 1 6 6 C 1.46504 * 120.00018 * 270.00021 * 5 4 2 7 7 C 1.50704 * 109.47002 * 269.99716 * 6 5 4 8 8 H 1.07997 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99955 * 179.97438 * 7 6 5 10 10 N 1.31525 * 120.00016 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00118 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47382 * 89.99665 * 11 9 7 13 13 H 1.48497 * 109.46896 * 210.00176 * 11 9 7 14 14 H 1.48499 * 109.46824 * 329.99965 * 11 9 7 15 15 C 1.34778 * 120.00352 * 89.99752 * 5 4 2 16 16 O 1.21280 * 120.00650 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99630 * 0.02562 * 15 5 4 18 18 O 1.42902 * 109.47239 * 179.97438 * 17 15 5 19 19 C 1.42897 * 114.00027 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47042 * 180.02562 * 19 18 17 21 21 O 1.34237 * 126.52568 * 270.02383 * 20 19 18 22 22 C 1.34058 * 108.23888 * 179.97438 * 21 20 19 23 23 N 1.29916 * 109.26315 * 359.97438 * 22 21 20 24 24 C 1.36108 * 108.47604 * 359.75550 * 23 22 21 25 25 C 1.47274 * 126.46412 * 180.24248 * 24 23 22 26 26 O 1.21530 * 119.99910 * 180.17046 * 25 24 23 27 27 O 1.34774 * 119.99658 * 0.17646 * 25 24 23 28 28 H 1.09002 * 109.46712 * 59.99749 * 1 2 3 29 29 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46576 * 300.00031 * 1 2 3 31 31 H 1.09000 * 109.46576 * 239.99968 * 2 1 3 32 32 H 1.09004 * 109.46811 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47126 * 300.00129 * 3 2 1 34 34 H 1.09003 * 109.46919 * 60.00282 * 3 2 1 35 35 H 1.08997 * 109.47465 * 304.99844 * 4 2 1 36 36 H 1.08996 * 109.47201 * 184.99621 * 4 2 1 37 37 H 1.08997 * 109.46863 * 29.99744 * 6 5 4 38 38 H 1.09000 * 109.46928 * 150.00326 * 6 5 4 39 39 H 0.96998 * 119.99751 * 180.02562 * 10 9 7 40 40 H 1.09007 * 109.47290 * 60.00006 * 17 15 5 41 41 H 1.09002 * 109.47485 * 299.99658 * 17 15 5 42 42 H 1.09003 * 109.47363 * 60.00690 * 19 18 17 43 43 H 1.09004 * 109.47574 * 300.00032 * 19 18 17 44 44 H 1.07994 * 125.36844 * 179.97438 * 22 21 20 45 45 H 0.96705 * 117.00109 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1328 1.1905 6 6 0.3745 -2.5659 1.7612 7 6 0.5716 -2.9409 3.2075 8 1 1.5507 -2.8639 3.6567 9 6 -0.4982 -3.3812 3.9574 10 7 -1.6909 -3.4736 3.4108 11 14 -0.2541 -3.8454 5.7503 12 1 -0.4664 -2.6495 6.6046 13 1 -1.2288 -4.9011 6.1254 14 1 1.1270 -4.3546 5.9461 15 6 2.4714 -3.0331 0.6114 16 8 2.1507 -4.2018 0.5632 17 6 3.7861 -2.5877 0.0249 18 8 4.4687 -3.7160 -0.5257 19 6 5.7336 -3.4012 -1.1113 20 6 6.3610 -4.6578 -1.6576 21 8 7.1755 -5.4963 -0.9977 22 6 7.5170 -6.4908 -1.8293 23 7 6.9451 -6.3023 -2.9805 24 6 6.2040 -5.1628 -2.9125 25 6 5.3892 -4.5828 -3.9936 26 8 4.7732 -3.5524 -3.8043 27 8 5.3266 -5.1948 -5.1927 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 -0.3484 -1.7531 1.6918 38 1 0.0042 -3.4297 1.2092 39 1 -2.4437 -3.7830 3.9385 40 1 4.3991 -2.1385 0.8063 41 1 3.6038 -1.8543 -0.7606 42 1 6.3871 -2.9683 -0.3538 43 1 5.5913 -2.6851 -1.9206 44 1 8.1653 -7.3182 -1.5813 45 1 4.7792 -4.7763 -5.8712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591322288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:08 Heat of formation + Delta-G solvation = -142.620692 kcal Electronic energy + Delta-G solvation = -30012.612067 eV Core-core repulsion = 25611.799122 eV Total energy + Delta-G solvation = -4400.812945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.85842 -40.18804 -39.41850 -37.69754 -36.37179 -36.21817 -35.24810 -33.55295 -32.34308 -31.99041 -29.08944 -27.53321 -26.84030 -26.34389 -25.31320 -24.75622 -22.74734 -22.54666 -21.19508 -20.26342 -18.78352 -18.56830 -17.92105 -17.52580 -16.83094 -16.53344 -16.47694 -16.19626 -15.93409 -15.66224 -15.20290 -15.19482 -14.52867 -14.49133 -14.13312 -13.87606 -13.57563 -13.37629 -12.97753 -12.52342 -12.35384 -12.09605 -12.00231 -11.95403 -11.90962 -11.64417 -11.52129 -11.34763 -11.19365 -11.06368 -10.97468 -10.91524 -10.71151 -10.48868 -10.28103 -10.11928 -9.78495 -9.58014 -9.54909 -8.86246 -8.41154 -7.65111 -6.03075 -4.07429 0.47401 1.56138 2.02778 2.62263 2.72625 3.30304 3.32308 3.37188 3.38453 3.43839 3.72857 4.04359 4.36576 4.48133 4.65980 4.78755 4.90824 4.99209 5.06146 5.13588 5.17587 5.24734 5.28643 5.32009 5.37830 5.47877 5.67167 5.68984 5.81158 5.87260 6.09211 6.13948 6.14705 6.15223 6.30332 6.53801 6.69246 6.79963 7.02374 7.13239 7.45089 7.55337 7.62488 7.93464 8.25015 8.38450 8.91000 9.08345 9.57297 11.04871 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003008 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.491561 B = 9305.404899 C =10732.796998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.113 3.887 5 N -0.593 5.593 6 C 0.244 3.756 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.507 3.493 16 O -0.519 6.519 17 C 0.046 3.954 18 O -0.350 6.350 19 C 0.134 3.866 20 C 0.063 3.937 21 O -0.184 6.184 22 C 0.189 3.811 23 N -0.451 5.451 24 C -0.040 4.040 25 C 0.574 3.426 26 O -0.496 6.496 27 O -0.496 6.496 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.262 0.738 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.156 5.046 -12.865 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.201 4.201 4 C -0.011 4.011 5 N -0.326 5.326 6 C 0.126 3.874 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.292 3.708 16 O -0.395 6.395 17 C -0.033 4.033 18 O -0.269 6.269 19 C 0.057 3.943 20 C 0.006 3.994 21 O -0.070 6.070 22 C -0.040 4.040 23 N -0.179 5.179 24 C -0.158 4.158 25 C 0.416 3.584 26 O -0.384 6.384 27 O -0.306 6.306 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.277 0.723 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 17.826 3.860 -12.996 22.396 hybrid contribution -0.124 0.478 1.170 1.270 sum 17.702 4.338 -11.827 21.727 Atomic orbital electron populations 1.21926 0.94473 1.03167 1.01025 1.21615 0.97336 0.95854 0.98773 1.21782 1.00468 0.95973 1.01876 1.21594 0.98856 0.82396 0.98298 1.48152 1.21757 1.06121 1.56545 1.19426 0.78280 0.96508 0.93207 1.21452 0.95094 1.44506 0.95517 0.92499 1.24922 0.95061 0.95402 0.98686 1.69932 0.99793 1.47032 1.36572 0.86510 0.78078 0.78179 0.84739 1.20676 1.21105 1.19919 1.19798 0.84872 0.86534 0.79587 1.90709 1.74361 1.17245 1.57143 1.22481 0.93877 0.88744 0.98248 1.88078 1.30183 1.32038 1.76564 1.20901 0.86096 0.88112 0.99218 1.23212 0.92506 0.93589 0.90078 1.84443 1.50138 1.30313 1.42096 1.28230 1.00178 0.92533 0.83029 1.70889 1.09204 1.14436 1.23391 1.20208 1.05282 0.96344 0.93961 1.18964 0.77618 0.80857 0.80948 1.90954 1.42245 1.23357 1.81849 1.84633 1.67809 1.55620 1.22575 0.93561 0.91210 0.92458 0.91531 0.92956 0.92774 0.92425 0.89602 0.91883 0.93900 0.94018 0.92739 0.90476 0.90237 0.90421 0.87739 0.72275 0.72429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.18 37.16 0.30 -1.93 16 2 C -0.12 -1.55 3.12 -90.62 -0.28 -1.84 16 3 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 4 C 0.11 1.75 4.70 -4.04 -0.02 1.73 16 5 N -0.59 -12.36 2.28 -175.06 -0.40 -12.76 16 6 C 0.24 6.30 4.23 -5.19 -0.02 6.28 16 7 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.51 10.93 7.75 -10.98 -0.09 10.85 16 16 O -0.52 -14.00 16.08 -14.35 -0.23 -14.23 16 17 C 0.05 0.72 4.97 36.01 0.18 0.90 16 18 O -0.35 -5.93 9.86 -55.14 -0.54 -6.47 16 19 C 0.13 1.60 5.92 36.01 0.21 1.82 16 20 C 0.06 0.80 7.07 -35.05 -0.25 0.55 16 21 O -0.18 -2.01 10.72 6.54 0.07 -1.94 16 22 C 0.19 1.64 13.19 51.95 0.69 2.32 16 23 N -0.45 -5.44 11.36 -11.50 -0.13 -5.57 16 24 C -0.04 -0.52 7.04 -83.04 -0.58 -1.11 16 25 C 0.57 7.37 8.33 34.40 0.29 7.66 16 26 O -0.50 -7.11 15.60 -19.29 -0.30 -7.41 16 27 O -0.50 -5.00 13.44 -40.69 -0.55 -5.55 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.27 5.89 -51.93 -0.31 0.96 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 36 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 37 H 0.04 1.09 5.98 -51.93 -0.31 0.78 16 38 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.08 0.97 7.40 -51.92 -0.38 0.58 16 41 H 0.08 1.03 7.26 -51.93 -0.38 0.66 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 1.14 6.50 -51.93 -0.34 0.80 16 44 H 0.26 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.42 2.00 9.11 45.56 0.42 2.42 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -39.30 386.45 -5.52 -44.82 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.32 Total: -0.35 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 0.35 Total: 12.53 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.21 Total: -44.13 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.55 Total: -35.61 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.30 -5.52 -44.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591322288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.800 kcal (2) G-P(sol) polarization free energy of solvation -39.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds