Wall clock time and date at job start Sat Apr 11 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47178 * 2 1 4 4 C 1.52997 * 109.47080 * 120.00157 * 2 1 3 5 5 N 1.46499 * 109.47096 * 64.99770 * 4 2 1 6 6 C 1.46504 * 120.00018 * 270.00021 * 5 4 2 7 7 C 1.50704 * 109.47002 * 269.99716 * 6 5 4 8 8 H 1.07997 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99955 * 179.97438 * 7 6 5 10 10 N 1.31525 * 120.00016 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00118 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47382 * 89.99665 * 11 9 7 13 13 H 1.48497 * 109.46896 * 210.00176 * 11 9 7 14 14 H 1.48499 * 109.46824 * 329.99965 * 11 9 7 15 15 C 1.34778 * 120.00352 * 89.99752 * 5 4 2 16 16 O 1.21280 * 120.00650 * 179.97438 * 15 5 4 17 17 C 1.50700 * 119.99630 * 0.02562 * 15 5 4 18 18 O 1.42902 * 109.47239 * 179.97438 * 17 15 5 19 19 C 1.42897 * 114.00027 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47042 * 180.02562 * 19 18 17 21 21 O 1.34237 * 126.52568 * 270.02383 * 20 19 18 22 22 C 1.34058 * 108.23888 * 179.97438 * 21 20 19 23 23 N 1.29916 * 109.26315 * 359.97438 * 22 21 20 24 24 C 1.36108 * 108.47604 * 359.75550 * 23 22 21 25 25 C 1.47274 * 126.46412 * 180.24248 * 24 23 22 26 26 O 1.21530 * 119.99910 * 180.17046 * 25 24 23 27 27 O 1.34774 * 119.99658 * 0.17646 * 25 24 23 28 28 H 1.09002 * 109.46712 * 59.99749 * 1 2 3 29 29 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46576 * 300.00031 * 1 2 3 31 31 H 1.09000 * 109.46576 * 239.99968 * 2 1 3 32 32 H 1.09004 * 109.46811 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47126 * 300.00129 * 3 2 1 34 34 H 1.09003 * 109.46919 * 60.00282 * 3 2 1 35 35 H 1.08997 * 109.47465 * 304.99844 * 4 2 1 36 36 H 1.08996 * 109.47201 * 184.99621 * 4 2 1 37 37 H 1.08997 * 109.46863 * 29.99744 * 6 5 4 38 38 H 1.09000 * 109.46928 * 150.00326 * 6 5 4 39 39 H 0.96998 * 119.99751 * 180.02562 * 10 9 7 40 40 H 1.09007 * 109.47290 * 60.00006 * 17 15 5 41 41 H 1.09002 * 109.47485 * 299.99658 * 17 15 5 42 42 H 1.09003 * 109.47363 * 60.00690 * 19 18 17 43 43 H 1.09004 * 109.47574 * 300.00032 * 19 18 17 44 44 H 1.07994 * 125.36844 * 179.97438 * 22 21 20 45 45 H 0.96705 * 117.00109 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1328 1.1905 6 6 0.3745 -2.5659 1.7612 7 6 0.5716 -2.9409 3.2075 8 1 1.5507 -2.8639 3.6567 9 6 -0.4982 -3.3812 3.9574 10 7 -1.6909 -3.4736 3.4108 11 14 -0.2541 -3.8454 5.7503 12 1 -0.4664 -2.6495 6.6046 13 1 -1.2288 -4.9011 6.1254 14 1 1.1270 -4.3546 5.9461 15 6 2.4714 -3.0331 0.6114 16 8 2.1507 -4.2018 0.5632 17 6 3.7861 -2.5877 0.0249 18 8 4.4687 -3.7160 -0.5257 19 6 5.7336 -3.4012 -1.1113 20 6 6.3610 -4.6578 -1.6576 21 8 7.1755 -5.4963 -0.9977 22 6 7.5170 -6.4908 -1.8293 23 7 6.9451 -6.3023 -2.9805 24 6 6.2040 -5.1628 -2.9125 25 6 5.3892 -4.5828 -3.9936 26 8 4.7732 -3.5524 -3.8043 27 8 5.3266 -5.1948 -5.1927 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6055 -0.2618 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 -0.3484 -1.7531 1.6918 38 1 0.0042 -3.4297 1.2092 39 1 -2.4437 -3.7830 3.9385 40 1 4.3991 -2.1385 0.8063 41 1 3.6038 -1.8543 -0.7606 42 1 6.3871 -2.9683 -0.3538 43 1 5.5913 -2.6851 -1.9206 44 1 8.1653 -7.3182 -1.5813 45 1 4.7792 -4.7763 -5.8712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591322288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:08 Heat of formation + Delta-G solvation = -174.175302 kcal Electronic energy + Delta-G solvation = -30013.980377 eV Core-core repulsion = 25611.799122 eV Total energy + Delta-G solvation = -4402.181256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.65914 -41.11359 -40.96213 -38.89326 -37.73103 -37.22631 -36.07443 -35.36458 -34.14531 -32.93276 -30.68976 -28.83396 -27.95513 -27.55175 -26.81396 -25.62991 -24.47662 -23.55931 -22.04542 -21.46711 -20.14204 -19.57261 -18.86988 -18.66663 -18.48845 -18.00019 -17.66871 -17.32221 -16.98766 -16.79437 -16.55989 -16.20587 -16.16038 -15.78699 -15.39610 -15.13957 -14.63137 -14.47362 -14.32580 -14.17896 -13.65301 -13.49830 -13.30581 -13.10253 -12.99937 -12.93580 -12.84018 -12.65926 -12.54956 -12.53155 -12.16694 -12.12110 -12.10374 -11.94292 -11.81022 -11.55254 -11.50758 -10.83292 -10.64646 -10.61507 -10.35089 -9.41823 -8.21434 -6.35948 -0.43011 0.78677 1.23958 1.35703 1.39289 1.49231 1.74957 1.79628 1.84027 2.08233 2.39176 2.93467 3.06333 3.08150 3.37858 3.64073 3.86895 3.91999 3.99664 4.03803 4.13241 4.17667 4.19935 4.32806 4.38016 4.58774 4.64821 4.71155 4.84735 4.93978 5.02003 5.02775 5.07603 5.15243 5.23669 5.32181 5.35778 5.45397 5.52209 5.60503 5.78022 5.91576 6.08447 6.25502 6.70330 6.76572 6.84140 7.28172 7.45337 8.85471 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.003008 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.491561 B = 9305.404899 C =10732.796998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.135 4.135 4 C 0.106 3.894 5 N -0.594 5.594 6 C 0.262 3.738 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.007 3.993 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.261 1.261 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.493 3.507 16 O -0.591 6.591 17 C 0.061 3.939 18 O -0.391 6.391 19 C 0.132 3.868 20 C 0.046 3.954 21 O -0.188 6.188 22 C 0.214 3.786 23 N -0.487 5.487 24 C -0.061 4.061 25 C 0.572 3.428 26 O -0.519 6.519 27 O -0.494 6.494 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.040 0.960 38 H -0.013 1.013 39 H 0.266 0.734 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.314 0.686 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.112 6.628 -12.308 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.193 4.193 4 C -0.016 4.016 5 N -0.325 5.325 6 C 0.141 3.859 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.186 1.186 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.281 3.719 16 O -0.471 6.471 17 C -0.018 4.018 18 O -0.310 6.310 19 C 0.056 3.944 20 C -0.011 4.011 21 O -0.075 6.075 22 C -0.014 4.014 23 N -0.215 5.215 24 C -0.178 4.178 25 C 0.415 3.585 26 O -0.409 6.409 27 O -0.307 6.307 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.005 0.995 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.329 0.671 45 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 20.803 5.509 -12.481 24.878 hybrid contribution -1.023 -0.091 0.900 1.366 sum 19.780 5.419 -11.581 23.553 Atomic orbital electron populations 1.21906 0.96398 1.00539 1.01773 1.21569 0.95645 0.98078 0.97597 1.21728 1.02020 0.93017 1.02522 1.21981 1.01449 0.79071 0.99140 1.48136 1.20046 1.08622 1.55692 1.18849 0.80879 0.94320 0.91813 1.21760 0.95044 1.44792 0.96653 0.92760 1.25859 0.94701 0.95144 1.03505 1.70063 1.00661 1.47707 1.38411 0.85422 0.77818 0.78436 0.79176 1.18578 1.20845 1.19802 1.20992 0.86726 0.85577 0.78633 1.90663 1.76260 1.20293 1.59894 1.22396 0.90742 0.88613 1.00044 1.88013 1.32501 1.33296 1.77232 1.21140 0.84615 0.88250 1.00355 1.23372 0.93238 0.94369 0.90122 1.84459 1.49991 1.30635 1.42370 1.29487 0.98304 0.92051 0.81597 1.70884 1.10648 1.14685 1.25260 1.20457 1.05811 0.97066 0.94509 1.19089 0.77282 0.80603 0.81517 1.90923 1.43260 1.24309 1.82369 1.84596 1.68145 1.55587 1.22412 0.91576 0.95449 0.92957 0.91234 0.90423 0.91692 0.92294 0.90516 0.87621 0.94234 0.99507 0.92488 0.86407 0.87128 0.86857 0.86846 0.67137 0.70064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 8.18 71.98 0.59 -3.92 16 2 C -0.11 -2.72 3.12 -10.79 -0.03 -2.75 16 3 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 4 C 0.11 3.11 4.70 86.38 0.41 3.52 16 5 N -0.59 -25.28 2.28 -826.16 -1.88 -27.17 16 6 C 0.26 14.34 4.23 85.63 0.36 14.70 16 7 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.39 5.46 84.65 0.46 0.85 16 10 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 11 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.49 21.64 7.75 87.66 0.68 22.32 16 16 O -0.59 -33.69 16.08 16.01 0.26 -33.43 16 17 C 0.06 1.76 4.97 71.24 0.35 2.11 16 18 O -0.39 -12.86 9.86 -129.94 -1.28 -14.14 16 19 C 0.13 2.91 5.92 71.24 0.42 3.33 16 20 C 0.05 1.11 7.07 25.21 0.18 1.29 16 21 O -0.19 -3.76 10.72 0.50 0.01 -3.76 16 22 C 0.21 3.21 13.19 130.53 1.72 4.93 16 23 N -0.49 -11.20 11.36 -305.21 -3.47 -14.67 16 24 C -0.06 -1.58 7.04 40.38 0.28 -1.30 16 25 C 0.57 14.65 8.33 70.20 0.58 15.24 16 26 O -0.52 -14.80 15.60 19.74 0.31 -14.49 16 27 O -0.49 -9.79 13.44 -56.86 -0.76 -10.56 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.04 5.89 -2.39 -0.01 1.02 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.72 7.30 -2.39 -0.02 1.70 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 2.42 8.07 -2.39 -0.02 2.40 16 36 H 0.11 2.22 6.44 -2.39 -0.02 2.20 16 37 H 0.04 2.16 5.98 -2.39 -0.01 2.14 16 38 H -0.01 -0.86 7.42 -2.39 -0.02 -0.87 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.12 2.44 7.40 -2.38 -0.02 2.43 16 41 H 0.11 2.51 7.26 -2.39 -0.02 2.49 16 42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.11 2.24 6.50 -2.39 -0.02 2.22 16 44 H 0.31 0.49 8.06 -2.91 -0.02 0.46 16 45 H 0.44 3.96 9.11 -74.05 -0.67 3.28 16 Total: -1.00 -93.27 386.45 2.76 -90.51 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.36 Total: 9.78 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 6.91 Total: 27.19 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -5.07 Total: -98.61 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -1.47 Total: -76.38 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -93.27 2.76 -90.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591322288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.662 kcal (2) G-P(sol) polarization free energy of solvation -93.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds