Wall clock time and date at job start Sat Apr 11 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27580 * 126.41579 * 2 1 4 4 N 1.39151 * 113.16151 * 180.15602 * 3 2 1 5 5 C 1.46503 * 124.43550 * 179.77202 * 4 3 2 6 6 C 1.50702 * 109.46796 * 269.70073 * 5 4 3 7 7 C 1.38309 * 119.88243 * 90.00069 * 6 5 4 8 8 C 1.38023 * 120.11830 * 179.97438 * 7 6 5 9 9 C 1.39301 * 119.88147 * 0.02562 * 8 7 6 10 10 C 1.48466 * 120.12084 * 179.97438 * 9 8 7 11 11 N 1.34046 * 126.67033 * 359.97174 * 10 9 8 12 12 N 1.28986 * 107.26894 * 180.02562 * 11 10 9 13 13 N 1.28738 * 108.94219 * 359.97438 * 12 11 10 14 14 H 0.97001 * 125.33871 * 179.97438 * 13 12 11 15 15 N 1.28869 * 109.31550 * 0.24666 * 13 12 11 16 16 C 1.39308 * 119.76651 * 0.24789 * 9 8 7 17 17 C 1.38035 * 119.87386 * 359.47342 * 16 9 8 18 18 C 1.34949 * 111.12305 * 359.50411 * 4 3 2 19 19 O 1.21301 * 127.49904 * 180.28636 * 18 4 3 20 20 C 1.51443 * 126.41785 * 179.62986 * 2 1 3 21 21 H 1.08999 * 110.74268 * 298.60716 * 20 2 1 22 22 C 1.53000 * 110.60726 * 61.51535 * 20 2 1 23 23 C 1.50697 * 109.46902 * 180.57877 * 22 20 2 24 24 H 1.08000 * 120.00192 * 0.02562 * 23 22 20 25 25 C 1.37881 * 119.99741 * 179.97438 * 23 22 20 26 26 N 1.31510 * 120.00360 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99782 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47447 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47171 * 120.00404 * 27 25 23 30 30 H 1.48506 * 109.46993 * 239.99947 * 27 25 23 31 31 H 1.09002 * 109.46635 * 270.36785 * 1 2 3 32 32 H 1.08995 * 109.47136 * 30.37086 * 1 2 3 33 33 H 1.09003 * 109.47247 * 150.37914 * 1 2 3 34 34 H 1.08992 * 109.47009 * 149.69572 * 5 4 3 35 35 H 1.09005 * 109.46713 * 29.69735 * 5 4 3 36 36 H 1.08005 * 119.94171 * 0.02562 * 7 6 5 37 37 H 1.08004 * 120.06130 * 180.02562 * 8 7 6 38 38 H 1.07992 * 120.06262 * 179.72554 * 16 9 8 39 39 H 1.07998 * 119.93703 * 180.27008 * 17 16 9 40 40 H 1.08991 * 109.47025 * 300.58003 * 22 20 2 41 41 H 1.09004 * 109.46913 * 60.58435 * 22 20 2 42 42 H 0.97000 * 120.00174 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6188 0.7076 -0.0035 5 6 4.7022 1.6938 -0.0091 6 6 5.0742 2.0232 -1.4318 7 6 4.4370 3.0606 -2.0881 8 6 4.7743 3.3669 -3.3910 9 6 5.7579 2.6286 -4.0451 10 6 6.1245 2.9530 -5.4468 11 7 5.5980 3.9227 -6.2079 12 7 6.1866 3.8715 -7.3546 13 7 7.0512 2.9178 -7.3383 14 1 7.6271 2.6699 -8.0784 15 7 7.0274 2.3405 -6.1864 16 6 6.3925 1.5810 -3.3814 17 6 6.0516 1.2870 -2.0765 18 6 3.8035 -0.6291 0.0048 19 8 4.8579 -1.2288 0.0093 20 6 2.4060 -1.2186 0.0079 21 1 2.2425 -1.8133 0.9066 22 6 2.1761 -2.0656 -1.2454 23 6 3.0718 -3.2767 -1.2045 24 1 3.7382 -3.4276 -0.3680 25 6 3.0400 -4.1929 -2.2344 26 7 2.2283 -4.0095 -3.2528 27 14 4.1498 -5.6946 -2.1833 28 1 4.9611 -5.6685 -0.9398 29 1 3.3189 -6.9252 -2.2060 30 1 5.0513 -5.6842 -3.3634 31 1 -0.3633 0.0066 1.0277 32 1 -0.3633 0.8866 -0.5196 33 1 -0.3634 -0.8934 -0.5079 34 1 5.5696 1.2835 0.5077 35 1 4.3714 2.5997 0.4991 36 1 3.6748 3.6327 -1.5799 37 1 4.2764 4.1774 -3.9025 38 1 7.1526 1.0027 -3.8854 39 1 6.5460 0.4779 -1.5595 40 1 1.1347 -2.3849 -1.2820 41 1 2.4060 -1.4734 -2.1313 42 1 2.2061 -4.6538 -3.9775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603826285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:11 Heat of formation + Delta-G solvation = 165.601747 kcal Electronic energy + Delta-G solvation = -28468.136432 eV Core-core repulsion = 24452.583437 eV Total energy + Delta-G solvation = -4015.552995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.57593 -40.77347 -39.22294 -36.76427 -35.02830 -34.32996 -33.57748 -32.80036 -31.10470 -30.96748 -30.34901 -28.49277 -26.52824 -25.45775 -24.83680 -23.55926 -22.48328 -22.26063 -21.09066 -20.05131 -19.33755 -18.95699 -17.26383 -17.05308 -16.49591 -16.09269 -15.83639 -15.26861 -14.98257 -14.61307 -14.39326 -14.17977 -13.89933 -13.50645 -13.39721 -13.18281 -13.14239 -12.78623 -12.56072 -12.32324 -12.25935 -11.97117 -11.80817 -11.52849 -11.50288 -11.37831 -11.34360 -11.08241 -11.00422 -10.90555 -10.83073 -10.57854 -10.18977 -9.52812 -9.42092 -8.91588 -8.80540 -8.58768 -8.36064 -8.12039 -6.02267 -4.03178 0.60181 1.05536 1.44537 2.09563 2.18299 2.21223 2.93337 3.24685 3.33265 3.40829 3.48579 3.57676 3.87535 4.08163 4.45093 4.47642 4.75314 4.80255 4.91946 5.00655 5.16975 5.26573 5.34865 5.36608 5.40677 5.49927 5.61401 5.66351 5.73367 5.84704 5.90868 5.98135 6.08319 6.14993 6.18479 6.36780 6.37421 6.42495 6.57672 6.67203 6.84834 6.90500 7.42621 7.48944 7.96508 8.00815 8.19337 8.30016 8.55187 9.03052 9.61326 11.09020 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.003598 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.214175 B = 7780.064841 C = 9514.841233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.102 3.898 3 N -0.257 5.257 4 N -0.479 5.479 5 C 0.182 3.818 6 C -0.087 4.087 7 C -0.097 4.097 8 C -0.081 4.081 9 C -0.021 4.021 10 C 0.226 3.774 11 N -0.269 5.269 12 N -0.053 5.053 13 N -0.229 5.229 14 H 0.475 0.525 15 N -0.293 5.293 16 C -0.079 4.079 17 C -0.096 4.096 18 C 0.513 3.487 19 O -0.484 6.484 20 C -0.132 4.132 21 H 0.121 0.879 22 C 0.055 3.945 23 C -0.513 4.513 24 H 0.066 0.934 25 C 0.060 3.940 26 N -0.897 5.897 27 Si 0.893 3.107 28 H -0.270 1.270 29 H -0.284 1.284 30 H -0.285 1.285 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.037 0.963 41 H 0.019 0.981 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 15.952 -0.030 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 N -0.064 5.064 4 N -0.300 5.300 5 C 0.060 3.940 6 C -0.090 4.090 7 C -0.116 4.116 8 C -0.101 4.101 9 C -0.024 4.024 10 C -0.054 4.054 11 N -0.142 5.142 12 N -0.048 5.048 13 N -0.075 5.075 14 H 0.329 0.671 15 N -0.144 5.144 16 C -0.099 4.099 17 C -0.114 4.114 18 C 0.301 3.699 19 O -0.354 6.354 20 C -0.156 4.156 21 H 0.138 0.862 22 C 0.017 3.983 23 C -0.552 4.552 24 H 0.084 0.916 25 C -0.141 4.141 26 N -0.537 5.537 27 Si 0.721 3.279 28 H -0.195 1.195 29 H -0.211 1.211 30 H -0.211 1.211 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.064 16.946 -0.745 17.702 hybrid contribution 1.144 -2.104 -0.454 2.438 sum 6.208 14.841 -1.199 16.132 Atomic orbital electron populations 1.20315 0.85427 1.04421 1.03234 1.25425 0.97251 0.91883 0.94502 1.74484 0.88967 1.26904 1.15997 1.49802 1.02450 1.06089 1.71679 1.20224 0.88513 0.92614 0.92641 1.20424 0.95837 0.95535 0.97158 1.20971 0.99087 0.97387 0.94150 1.21098 0.95503 0.99002 0.94467 1.17250 0.99846 0.98913 0.86423 1.23751 0.92812 0.91802 0.97012 1.76066 1.21296 1.19774 0.97066 1.78881 1.01167 1.07887 1.16858 1.47719 1.27538 1.20282 1.11950 0.67110 1.74972 1.22681 1.22668 0.94094 1.21141 0.99045 0.95300 0.94407 1.21139 0.97206 0.98746 0.94342 1.21411 0.92012 0.81800 0.74704 1.90697 1.31152 1.65773 1.47803 1.22055 0.90808 0.96501 1.06247 0.86187 1.18888 0.98495 0.93162 0.87739 1.21234 1.21896 1.05593 1.06450 0.91565 1.24945 0.95588 0.98305 0.95300 1.69962 1.37834 1.36424 1.09461 0.86507 0.80668 0.82551 0.78202 1.19489 1.21063 1.21121 0.89961 0.90414 0.89055 0.88590 0.88686 0.84957 0.84716 0.84940 0.84692 0.94503 0.96258 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.49 36.00 0.38 -0.53 16 2 C 0.10 1.68 6.93 -78.72 -0.55 1.13 16 3 N -0.26 -4.30 12.02 35.54 0.43 -3.87 16 4 N -0.48 -8.45 3.52 -61.06 -0.22 -8.66 16 5 C 0.18 2.53 6.36 -5.19 -0.03 2.50 16 6 C -0.09 -1.25 5.47 -104.57 -0.57 -1.82 16 7 C -0.10 -1.26 9.68 -39.63 -0.38 -1.65 16 8 C -0.08 -1.06 9.70 -39.27 -0.38 -1.44 16 9 C -0.02 -0.30 5.88 -104.89 -0.62 -0.91 16 10 C 0.23 3.17 7.94 -156.30 -1.24 1.93 16 11 N -0.27 -3.75 12.23 32.16 0.39 -3.35 16 12 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 13 N -0.23 -2.16 7.90 60.35 0.48 -1.68 16 14 H 0.47 2.06 8.96 -340.36 -3.05 -1.00 16 15 N -0.29 -3.66 12.08 32.17 0.39 -3.27 16 16 C -0.08 -1.14 9.70 -39.26 -0.38 -1.52 16 17 C -0.10 -1.45 9.68 -39.63 -0.38 -1.83 16 18 C 0.51 10.85 7.56 -10.43 -0.08 10.77 16 19 O -0.48 -11.60 16.61 5.54 0.09 -11.51 16 20 C -0.13 -2.67 3.01 -92.08 -0.28 -2.95 16 21 H 0.12 2.29 8.14 -51.93 -0.42 1.87 16 22 C 0.06 1.37 4.50 -27.88 -0.13 1.24 16 23 C -0.51 -14.40 8.36 -34.44 -0.29 -14.69 16 24 H 0.07 1.90 7.06 -52.49 -0.37 1.53 16 25 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 26 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 27 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 28 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.13 7.57 -51.93 -0.39 0.73 16 34 H 0.10 1.27 7.98 -51.93 -0.41 0.85 16 35 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 36 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.13 1.58 7.89 -52.48 -0.41 1.17 16 38 H 0.13 1.79 7.88 -52.49 -0.41 1.38 16 39 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.04 0.91 7.58 -51.93 -0.39 0.51 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -35.76 372.71 -8.86 -44.62 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.54 Total: -1.21 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -5.03 Total: -8.16 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 3.02 Total: -46.53 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.76 -8.86 -44.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603826285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.225 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds