Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.27580 * 126.41579 * 2 1 4 4 N 1.39151 * 113.16151 * 180.15602 * 3 2 1 5 5 C 1.46503 * 124.43550 * 179.77202 * 4 3 2 6 6 C 1.50702 * 109.46796 * 269.70073 * 5 4 3 7 7 C 1.38309 * 119.88243 * 90.00069 * 6 5 4 8 8 C 1.38023 * 120.11830 * 179.97438 * 7 6 5 9 9 C 1.39301 * 119.88147 * 0.02562 * 8 7 6 10 10 C 1.48466 * 120.12084 * 179.97438 * 9 8 7 11 11 N 1.34046 * 126.67033 * 359.97174 * 10 9 8 12 12 N 1.28986 * 107.26894 * 180.02562 * 11 10 9 13 13 N 1.28738 * 108.94219 * 359.97438 * 12 11 10 14 14 H 0.97001 * 125.33871 * 179.97438 * 13 12 11 15 15 N 1.28869 * 109.31550 * 0.24666 * 13 12 11 16 16 C 1.39308 * 119.76651 * 0.24789 * 9 8 7 17 17 C 1.38035 * 119.87386 * 359.47342 * 16 9 8 18 18 C 1.34949 * 111.12305 * 359.50411 * 4 3 2 19 19 O 1.21301 * 127.49904 * 180.28636 * 18 4 3 20 20 C 1.51443 * 126.41785 * 179.62986 * 2 1 3 21 21 H 1.08999 * 110.74268 * 298.60716 * 20 2 1 22 22 C 1.53000 * 110.60726 * 61.51535 * 20 2 1 23 23 C 1.50697 * 109.46902 * 180.57877 * 22 20 2 24 24 H 1.08000 * 120.00192 * 0.02562 * 23 22 20 25 25 C 1.37881 * 119.99741 * 179.97438 * 23 22 20 26 26 N 1.31510 * 120.00360 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99782 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47447 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47171 * 120.00404 * 27 25 23 30 30 H 1.48506 * 109.46993 * 239.99947 * 27 25 23 31 31 H 1.09002 * 109.46635 * 270.36785 * 1 2 3 32 32 H 1.08995 * 109.47136 * 30.37086 * 1 2 3 33 33 H 1.09003 * 109.47247 * 150.37914 * 1 2 3 34 34 H 1.08992 * 109.47009 * 149.69572 * 5 4 3 35 35 H 1.09005 * 109.46713 * 29.69735 * 5 4 3 36 36 H 1.08005 * 119.94171 * 0.02562 * 7 6 5 37 37 H 1.08004 * 120.06130 * 180.02562 * 8 7 6 38 38 H 1.07992 * 120.06262 * 179.72554 * 16 9 8 39 39 H 1.07998 * 119.93703 * 180.27008 * 17 16 9 40 40 H 1.08991 * 109.47025 * 300.58003 * 22 20 2 41 41 H 1.09004 * 109.46913 * 60.58435 * 22 20 2 42 42 H 0.97000 * 120.00174 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6188 0.7076 -0.0035 5 6 4.7022 1.6938 -0.0091 6 6 5.0742 2.0232 -1.4318 7 6 4.4370 3.0606 -2.0881 8 6 4.7743 3.3669 -3.3910 9 6 5.7579 2.6286 -4.0451 10 6 6.1245 2.9530 -5.4468 11 7 5.5980 3.9227 -6.2079 12 7 6.1866 3.8715 -7.3546 13 7 7.0512 2.9178 -7.3383 14 1 7.6271 2.6699 -8.0784 15 7 7.0274 2.3405 -6.1864 16 6 6.3925 1.5810 -3.3814 17 6 6.0516 1.2870 -2.0765 18 6 3.8035 -0.6291 0.0048 19 8 4.8579 -1.2288 0.0093 20 6 2.4060 -1.2186 0.0079 21 1 2.2425 -1.8133 0.9066 22 6 2.1761 -2.0656 -1.2454 23 6 3.0718 -3.2767 -1.2045 24 1 3.7382 -3.4276 -0.3680 25 6 3.0400 -4.1929 -2.2344 26 7 2.2283 -4.0095 -3.2528 27 14 4.1498 -5.6946 -2.1833 28 1 4.9611 -5.6685 -0.9398 29 1 3.3189 -6.9252 -2.2060 30 1 5.0513 -5.6842 -3.3634 31 1 -0.3633 0.0066 1.0277 32 1 -0.3633 0.8866 -0.5196 33 1 -0.3634 -0.8934 -0.5079 34 1 5.5696 1.2835 0.5077 35 1 4.3714 2.5997 0.4991 36 1 3.6748 3.6327 -1.5799 37 1 4.2764 4.1774 -3.9025 38 1 7.1526 1.0027 -3.8854 39 1 6.5460 0.4779 -1.5595 40 1 1.1347 -2.3849 -1.2820 41 1 2.4060 -1.4734 -2.1313 42 1 2.2061 -4.6538 -3.9775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603826285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = 141.885506 kcal Electronic energy + Delta-G solvation = -28469.164846 eV Core-core repulsion = 24452.583437 eV Total energy + Delta-G solvation = -4016.581409 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.53735 -42.23729 -40.32988 -38.37550 -36.29735 -35.49874 -35.08264 -34.24591 -32.41455 -32.06276 -31.96695 -29.57826 -28.19282 -26.90517 -25.82057 -24.84566 -23.97564 -23.51880 -22.22197 -21.57124 -20.42658 -20.26064 -18.54617 -18.21653 -18.05510 -17.60662 -17.25374 -16.57629 -16.42007 -16.18873 -15.97358 -15.44403 -15.20739 -14.67827 -14.52145 -14.49217 -14.34754 -14.19009 -13.92061 -13.59417 -13.49730 -13.32809 -13.26572 -13.00850 -12.95397 -12.83219 -12.57980 -12.47563 -12.37407 -12.25970 -12.04065 -11.96198 -11.90136 -11.52263 -11.26604 -10.63183 -10.39265 -10.00539 -9.73545 -9.50268 -8.22177 -6.29003 -0.45831 0.08689 0.35366 0.76149 1.09972 1.34990 1.35162 1.37189 1.50693 1.63324 1.73537 2.39979 2.58071 2.76809 3.05667 3.07582 3.14414 3.37092 3.69721 3.79339 3.94989 4.01635 4.11926 4.24653 4.32894 4.36200 4.37469 4.55918 4.59167 4.67392 4.77688 4.81644 4.94570 5.00116 5.12826 5.23810 5.26218 5.33629 5.37109 5.40367 5.50278 5.55030 5.64099 5.76388 5.82308 6.16351 6.77310 6.82525 6.99535 7.03337 7.38850 8.89137 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.003598 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.214175 B = 7780.064841 C = 9514.841233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.114 3.886 3 N -0.254 5.254 4 N -0.474 5.474 5 C 0.176 3.824 6 C -0.097 4.097 7 C -0.091 4.091 8 C -0.080 4.080 9 C -0.028 4.028 10 C 0.211 3.789 11 N -0.287 5.287 12 N -0.053 5.053 13 N -0.200 5.200 14 H 0.495 0.505 15 N -0.300 5.300 16 C -0.089 4.089 17 C -0.112 4.112 18 C 0.500 3.500 19 O -0.526 6.526 20 C -0.139 4.139 21 H 0.130 0.870 22 C 0.069 3.931 23 C -0.526 4.526 24 H 0.054 0.946 25 C 0.010 3.990 26 N -0.927 5.927 27 Si 0.951 3.049 28 H -0.271 1.271 29 H -0.269 1.269 30 H -0.284 1.284 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.036 0.964 41 H -0.018 1.018 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 17.156 0.205 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.078 4.078 3 N -0.060 5.060 4 N -0.293 5.293 5 C 0.056 3.944 6 C -0.099 4.099 7 C -0.109 4.109 8 C -0.100 4.100 9 C -0.031 4.031 10 C -0.069 4.069 11 N -0.160 5.160 12 N -0.048 5.048 13 N -0.051 5.051 14 H 0.354 0.646 15 N -0.152 5.152 16 C -0.109 4.109 17 C -0.131 4.131 18 C 0.288 3.712 19 O -0.399 6.399 20 C -0.162 4.162 21 H 0.148 0.852 22 C 0.031 3.969 23 C -0.565 4.565 24 H 0.072 0.928 25 C -0.188 4.188 26 N -0.568 5.568 27 Si 0.777 3.223 28 H -0.196 1.196 29 H -0.194 1.194 30 H -0.210 1.210 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.148 0.852 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.054 0.946 41 H 0.001 0.999 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.194 18.191 -0.522 18.675 hybrid contribution 1.440 -2.440 -0.610 2.898 sum 5.634 15.751 -1.132 16.766 Atomic orbital electron populations 1.20539 0.81962 1.05104 1.05625 1.25944 0.98916 0.89510 0.93448 1.74549 0.88285 1.26432 1.16760 1.49908 1.03601 1.05489 1.70304 1.20541 0.87806 0.93064 0.92979 1.20496 0.95966 0.96061 0.97391 1.21228 0.98905 0.96764 0.94003 1.21333 0.95020 0.99056 0.94602 1.17403 1.00041 0.98831 0.86842 1.23758 0.93534 0.92393 0.97195 1.76042 1.22123 1.20231 0.97587 1.78815 1.01432 1.08279 1.16242 1.47767 1.26669 1.18916 1.11744 0.64624 1.74935 1.22537 1.22910 0.94863 1.21180 0.99537 0.95856 0.94350 1.21151 0.98139 0.98981 0.94833 1.21582 0.91725 0.83277 0.74634 1.90658 1.32376 1.66971 1.49903 1.21953 0.92005 0.97868 1.04400 0.85243 1.18567 0.97596 0.92292 0.88470 1.21513 1.22029 1.06846 1.06077 0.92759 1.25708 0.96922 1.01102 0.95065 1.70050 1.39148 1.37527 1.10059 0.85599 0.79031 0.79785 0.77903 1.19586 1.19403 1.21032 0.86583 0.88432 0.89528 0.88402 0.85183 0.82448 0.83148 0.84821 0.86129 0.94600 0.99930 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.49 71.23 0.75 -0.81 16 2 C 0.11 3.56 6.93 46.83 0.32 3.88 16 3 N -0.25 -8.00 12.02 -40.84 -0.49 -8.49 16 4 N -0.47 -16.35 3.52 -465.38 -1.64 -17.99 16 5 C 0.18 4.73 6.36 85.63 0.54 5.28 16 6 C -0.10 -2.73 5.47 -19.83 -0.11 -2.84 16 7 C -0.09 -2.21 9.68 22.24 0.22 -1.99 16 8 C -0.08 -2.02 9.70 22.47 0.22 -1.80 16 9 C -0.03 -0.78 5.88 -20.04 -0.12 -0.90 16 10 C 0.21 5.81 7.94 137.38 1.09 6.90 16 11 N -0.29 -7.74 12.23 -52.18 -0.64 -8.38 16 12 N -0.05 -1.18 13.47 37.02 0.50 -0.68 16 13 N -0.20 -3.50 7.90 37.02 0.29 -3.21 16 14 H 0.49 3.42 8.96 -347.53 -3.12 0.31 16 15 N -0.30 -7.30 12.08 -52.13 -0.63 -7.93 16 16 C -0.09 -2.66 9.70 22.48 0.22 -2.44 16 17 C -0.11 -3.51 9.68 22.24 0.22 -3.30 16 18 C 0.50 21.46 7.56 87.94 0.67 22.12 16 19 O -0.53 -26.12 16.61 -3.10 -0.05 -26.17 16 20 C -0.14 -5.60 3.01 -11.74 -0.04 -5.64 16 21 H 0.13 4.92 8.14 -2.39 -0.02 4.90 16 22 C 0.07 3.49 4.50 29.85 0.13 3.62 16 23 C -0.53 -30.21 8.36 25.60 0.21 -30.00 16 24 H 0.05 3.19 7.06 -2.91 -0.02 3.17 16 25 C 0.01 0.59 5.46 84.66 0.46 1.05 16 26 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 27 Si 0.95 46.03 29.54 68.60 2.03 48.05 16 28 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 29 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 30 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 31 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.95 7.57 -2.39 -0.02 1.93 16 34 H 0.10 2.58 7.98 -2.39 -0.02 2.56 16 35 H 0.13 2.55 8.08 -2.38 -0.02 2.54 16 36 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.15 3.28 7.89 -2.91 -0.02 3.25 16 38 H 0.13 3.80 7.88 -2.91 -0.02 3.78 16 39 H 0.12 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.04 1.79 7.58 -2.39 -0.02 1.78 16 41 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 42 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -78.61 372.71 2.41 -76.20 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -2.03 Total: 10.87 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.79 Total: -6.85 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -2.32 Total: -102.11 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.05 Total: -26.17 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -78.61 2.41 -76.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603826285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.090 kcal (2) G-P(sol) polarization free energy of solvation -78.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds