Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50696 * 109.47525 * 2 1 4 4 N 1.31129 * 126.55124 * 90.25049 * 3 2 1 5 5 C 1.34495 * 105.61546 * 180.12665 * 4 3 2 6 6 C 1.50707 * 126.28959 * 179.90433 * 5 4 3 7 7 N 1.46895 * 109.46819 * 269.71169 * 6 5 4 8 8 C 1.46899 * 110.99736 * 179.97438 * 7 6 5 9 9 H 1.09000 * 112.90940 * 23.75151 * 8 7 6 10 10 C 1.53786 * 113.61541 * 154.99883 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02506 * 10 8 7 12 12 H 1.08998 * 113.61196 * 219.97759 * 11 10 8 13 13 N 1.46506 * 113.61613 * 89.15811 * 11 10 8 14 14 C 1.34774 * 119.99981 * 154.99882 * 13 11 10 15 15 O 1.21275 * 120.00090 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99541 * 180.02562 * 14 13 11 17 17 S 1.81006 * 109.46768 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99751 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00454 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99823 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99810 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47396 * 89.99711 * 22 20 18 24 24 H 1.48501 * 109.46948 * 210.00155 * 22 20 18 25 25 H 1.48496 * 109.47126 * 329.99952 * 22 20 18 26 26 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 27 27 N 1.29951 * 107.42507 * 359.63702 * 5 4 3 28 28 O 1.21297 * 110.24795 * 0.23289 * 27 5 4 29 29 H 1.09003 * 109.47262 * 299.99936 * 1 2 3 30 30 H 1.09001 * 109.47073 * 59.99794 * 1 2 3 31 31 H 1.09003 * 109.47796 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47262 * 240.00064 * 2 1 3 33 33 H 1.09005 * 109.47512 * 119.99997 * 2 1 3 34 34 H 1.09000 * 109.46920 * 149.70926 * 6 5 4 35 35 H 1.08994 * 109.46921 * 29.71090 * 6 5 4 36 36 H 1.00902 * 111.00345 * 303.94908 * 7 6 5 37 37 H 1.09002 * 113.61357 * 25.43422 * 10 8 7 38 38 H 1.09002 * 113.61608 * 254.61584 * 10 8 7 39 39 H 0.97003 * 119.99276 * 335.00814 * 13 11 10 40 40 H 1.09007 * 109.47140 * 299.99355 * 16 14 13 41 41 H 1.08993 * 109.47822 * 59.99828 * 16 14 13 42 42 H 0.97000 * 120.00042 * 180.02562 * 21 20 18 43 43 H 1.09005 * 113.61471 * 139.98321 * 26 11 10 44 44 H 1.08996 * 113.61178 * 270.79663 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2970 2.1555 1.0534 5 6 2.7111 3.3414 0.5728 6 6 3.1339 4.5359 1.3887 7 7 1.9657 5.3862 1.6535 8 6 2.3406 6.5629 2.4490 9 1 3.3950 6.8220 2.3523 10 6 1.3927 7.7595 2.2633 11 6 1.5266 8.0028 3.7758 12 1 0.5916 8.2914 4.2560 13 7 2.6439 8.8808 4.1324 14 6 2.6090 9.5825 5.2825 15 8 1.6529 9.4870 6.0224 16 6 3.7581 10.4860 5.6490 17 16 3.4162 11.2825 7.2380 18 6 4.8780 12.2500 7.4160 19 1 5.6420 12.2195 6.6534 20 6 5.0477 13.0515 8.5366 21 7 4.1167 13.0883 9.4664 22 14 6.5970 14.0777 8.7250 23 1 6.3849 15.4122 8.1092 24 1 6.9095 14.2421 10.1674 25 1 7.7286 13.3945 8.0482 26 6 1.8507 6.5054 3.9084 27 7 2.6852 3.2662 -0.7243 28 8 2.2981 2.1710 -1.0736 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8811 5.1065 0.8371 35 1 3.5593 4.1983 2.3336 36 1 1.5149 5.6596 0.7932 37 1 0.3868 7.4758 1.9540 38 1 1.8133 8.5592 1.6535 39 1 3.4087 8.9570 3.5407 40 1 4.6723 9.8975 5.7273 41 1 3.8812 11.2478 4.8793 42 1 4.2350 13.6486 10.2493 43 1 2.6422 6.2919 4.6268 44 1 0.9701 5.8790 4.0503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661392042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = 50.276453 kcal Electronic energy + Delta-G solvation = -25352.150737 eV Core-core repulsion = 21434.748062 eV Total energy + Delta-G solvation = -3917.402675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.01349 -40.18303 -38.31794 -36.73725 -35.67038 -34.31805 -32.60451 -32.42715 -31.35315 -29.12271 -27.26092 -25.91034 -25.49356 -25.42836 -23.78843 -23.20015 -21.49008 -20.81735 -19.45098 -18.54622 -17.93473 -17.85138 -16.70767 -16.12759 -16.05806 -15.94788 -15.45684 -15.14890 -14.89099 -14.80919 -14.75707 -14.02444 -13.83723 -13.55993 -13.30425 -13.11719 -12.87650 -12.75672 -12.58095 -12.51369 -12.39451 -12.12418 -11.84618 -11.77771 -11.70187 -11.41139 -11.06745 -11.02904 -10.79739 -10.75327 -10.67381 -10.35797 -9.81743 -9.41794 -9.07510 -9.01761 -8.82715 -8.24069 -6.50316 -6.21946 -3.92557 0.70388 1.76247 2.34942 3.00383 3.05798 3.11111 3.22105 3.27504 3.31395 3.51478 3.68539 3.88247 4.20073 4.21564 4.33314 4.36397 4.40648 4.44055 4.71211 4.75129 4.80988 4.86725 5.11427 5.12315 5.13366 5.13507 5.25103 5.31741 5.32798 5.49989 5.54320 5.56790 5.59362 5.67539 5.81426 5.87670 5.94572 6.01364 6.12711 6.46613 6.73049 6.79974 7.59187 7.69004 7.74427 8.34822 8.60297 9.23355 10.85485 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.001495 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.998337 B =18724.488013 C =19023.939031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.030 4.030 3 C 0.178 3.822 4 N -0.465 5.465 5 C 0.178 3.822 6 C 0.149 3.851 7 N -0.668 5.668 8 C 0.058 3.942 9 H 0.078 0.922 10 C -0.148 4.148 11 C 0.125 3.875 12 H 0.107 0.893 13 N -0.723 5.723 14 C 0.535 3.465 15 O -0.514 6.514 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.135 4.135 27 N -0.383 5.383 28 O 0.077 5.923 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.344 0.656 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.071 0.929 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -25.419 -23.647 35.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 C -0.043 4.043 4 N -0.199 5.199 5 C -0.096 4.096 6 C 0.019 3.981 7 N -0.301 5.301 8 C -0.051 4.051 9 H 0.096 0.904 10 C -0.187 4.187 11 C 0.018 3.982 12 H 0.125 0.875 13 N -0.376 5.376 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.175 4.175 27 N -0.091 5.091 28 O 0.018 5.982 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.110 -25.090 -21.753 33.765 hybrid contribution 2.977 1.159 -1.807 3.670 sum -3.134 -23.931 -23.560 33.728 Atomic orbital electron populations 1.21798 0.92323 1.03574 1.03344 1.20220 0.97401 0.83265 1.05996 1.28962 0.96098 0.98571 0.80634 1.71924 1.17024 1.02334 1.28595 1.25719 1.00021 0.95926 0.87916 1.20206 0.92331 0.87445 0.98135 1.60561 1.25732 1.19590 1.24187 1.23232 0.97960 0.88520 0.95389 0.90448 1.23605 1.00929 0.97212 0.96918 1.21592 0.91825 0.90031 0.94745 0.87524 1.45729 1.21875 1.46497 1.23511 1.20321 0.88067 0.79374 0.80152 1.90702 1.34501 1.64014 1.49568 1.23537 0.98946 1.01063 1.06897 1.85411 1.28256 1.53749 1.15837 1.22871 1.05437 1.30537 1.09628 0.90942 1.24990 0.97426 0.96366 0.94758 1.70017 1.33059 1.37925 1.09247 0.86168 0.81769 0.80001 0.77563 1.20270 1.20731 1.19722 1.23592 1.02517 0.96387 0.95006 1.74656 1.18454 1.00180 1.15816 1.85283 1.59561 1.17484 1.35904 0.91472 0.91849 0.90331 0.87986 0.87126 0.92147 0.87545 0.83699 0.88165 0.90722 0.76938 0.89218 0.89216 0.92169 0.91000 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.89 37.15 0.37 -0.04 16 2 C -0.03 -0.09 6.56 -27.89 -0.18 -0.27 16 3 C 0.18 1.30 7.77 -13.06 -0.10 1.20 16 4 N -0.47 -4.60 11.55 -9.87 -0.11 -4.72 16 5 C 0.18 1.76 7.73 -156.36 -1.21 0.55 16 6 C 0.15 1.25 6.15 -4.98 -0.03 1.22 16 7 N -0.67 -5.58 6.55 -106.98 -0.70 -6.28 16 8 C 0.06 0.48 4.03 -66.76 -0.27 0.21 16 9 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 10 C -0.15 -1.21 7.39 -25.92 -0.19 -1.40 16 11 C 0.12 1.44 4.32 -67.11 -0.29 1.15 16 12 H 0.11 1.45 7.46 -51.93 -0.39 1.06 16 13 N -0.72 -9.38 5.27 -53.02 -0.28 -9.66 16 14 C 0.53 9.86 7.85 -10.99 -0.09 9.78 16 15 O -0.51 -11.64 15.46 5.56 0.09 -11.55 16 16 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 18 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 C -0.14 -1.41 7.69 -25.78 -0.20 -1.61 16 27 N -0.38 -3.91 12.16 30.90 0.38 -3.53 16 28 O 0.08 0.67 11.31 18.09 0.20 0.87 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.34 2.71 8.54 -39.29 -0.34 2.38 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.40 3.99 8.70 -40.82 -0.36 3.63 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -36.15 392.03 -9.32 -45.47 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.53 Total: 1.42 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.77 Total: -5.06 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.02 Total: -49.64 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.29 Total: -10.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.15 -9.32 -45.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661392042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.747 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds