Wall clock time and date at job start Sat Apr 11 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50696 * 109.47525 * 2 1 4 4 N 1.31129 * 126.55124 * 90.25049 * 3 2 1 5 5 C 1.34495 * 105.61546 * 180.12665 * 4 3 2 6 6 C 1.50707 * 126.28959 * 179.90433 * 5 4 3 7 7 N 1.46895 * 109.46819 * 269.71169 * 6 5 4 8 8 C 1.46899 * 110.99736 * 179.97438 * 7 6 5 9 9 H 1.09000 * 112.90940 * 23.75151 * 8 7 6 10 10 C 1.53786 * 113.61541 * 154.99883 * 8 7 6 11 11 C 1.53781 * 87.17350 * 140.02506 * 10 8 7 12 12 H 1.08998 * 113.61196 * 219.97759 * 11 10 8 13 13 N 1.46506 * 113.61613 * 89.15811 * 11 10 8 14 14 C 1.34774 * 119.99981 * 154.99882 * 13 11 10 15 15 O 1.21275 * 120.00090 * 0.02562 * 14 13 11 16 16 C 1.50696 * 119.99541 * 180.02562 * 14 13 11 17 17 S 1.81006 * 109.46768 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99751 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00454 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99823 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99810 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99997 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47396 * 89.99711 * 22 20 18 24 24 H 1.48501 * 109.46948 * 210.00155 * 22 20 18 25 25 H 1.48496 * 109.47126 * 329.99952 * 22 20 18 26 26 C 1.53781 * 87.08070 * 334.52830 * 11 10 8 27 27 N 1.29951 * 107.42507 * 359.63702 * 5 4 3 28 28 O 1.21297 * 110.24795 * 0.23289 * 27 5 4 29 29 H 1.09003 * 109.47262 * 299.99936 * 1 2 3 30 30 H 1.09001 * 109.47073 * 59.99794 * 1 2 3 31 31 H 1.09003 * 109.47796 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47262 * 240.00064 * 2 1 3 33 33 H 1.09005 * 109.47512 * 119.99997 * 2 1 3 34 34 H 1.09000 * 109.46920 * 149.70926 * 6 5 4 35 35 H 1.08994 * 109.46921 * 29.71090 * 6 5 4 36 36 H 1.00902 * 111.00345 * 303.94908 * 7 6 5 37 37 H 1.09002 * 113.61357 * 25.43422 * 10 8 7 38 38 H 1.09002 * 113.61608 * 254.61584 * 10 8 7 39 39 H 0.97003 * 119.99276 * 335.00814 * 13 11 10 40 40 H 1.09007 * 109.47140 * 299.99355 * 16 14 13 41 41 H 1.08993 * 109.47822 * 59.99828 * 16 14 13 42 42 H 0.97000 * 120.00042 * 180.02562 * 21 20 18 43 43 H 1.09005 * 113.61471 * 139.98321 * 26 11 10 44 44 H 1.08996 * 113.61178 * 270.79663 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2970 2.1555 1.0534 5 6 2.7111 3.3414 0.5728 6 6 3.1339 4.5359 1.3887 7 7 1.9657 5.3862 1.6535 8 6 2.3406 6.5629 2.4490 9 1 3.3950 6.8220 2.3523 10 6 1.3927 7.7595 2.2633 11 6 1.5266 8.0028 3.7758 12 1 0.5916 8.2914 4.2560 13 7 2.6439 8.8808 4.1324 14 6 2.6090 9.5825 5.2825 15 8 1.6529 9.4870 6.0224 16 6 3.7581 10.4860 5.6490 17 16 3.4162 11.2825 7.2380 18 6 4.8780 12.2500 7.4160 19 1 5.6420 12.2195 6.6534 20 6 5.0477 13.0515 8.5366 21 7 4.1167 13.0883 9.4664 22 14 6.5970 14.0777 8.7250 23 1 6.3849 15.4122 8.1092 24 1 6.9095 14.2421 10.1674 25 1 7.7286 13.3945 8.0482 26 6 1.8507 6.5054 3.9084 27 7 2.6852 3.2662 -0.7243 28 8 2.2981 2.1710 -1.0736 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8811 5.1065 0.8371 35 1 3.5593 4.1983 2.3336 36 1 1.5149 5.6596 0.7932 37 1 0.3868 7.4758 1.9540 38 1 1.8133 8.5592 1.6535 39 1 3.4087 8.9570 3.5407 40 1 4.6723 9.8975 5.7273 41 1 3.8812 11.2478 4.8793 42 1 4.2350 13.6486 10.2493 43 1 2.6422 6.2919 4.6268 44 1 0.9701 5.8790 4.0503 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661392042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:30 Heat of formation + Delta-G solvation = 21.639692 kcal Electronic energy + Delta-G solvation = -25353.392520 eV Core-core repulsion = 21434.748062 eV Total energy + Delta-G solvation = -3918.644458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.66530 -41.25120 -39.52607 -37.43927 -36.23284 -35.07078 -34.58511 -33.67999 -31.92043 -30.59872 -28.04480 -27.64069 -26.68751 -25.84841 -24.52940 -23.90320 -22.22225 -21.93889 -20.40442 -19.83311 -19.21169 -18.56873 -18.01050 -17.20251 -16.90771 -16.87883 -16.53209 -16.34106 -16.32068 -15.86250 -15.57391 -15.26575 -14.75204 -14.51167 -14.49374 -14.02901 -13.86787 -13.72122 -13.46541 -13.36263 -13.16833 -13.15265 -12.89535 -12.78013 -12.67210 -12.60725 -12.44933 -12.11284 -11.98216 -11.74219 -11.58921 -11.49424 -11.14324 -11.00271 -10.95984 -10.27584 -10.08852 -9.59275 -8.66836 -8.34725 -6.12893 0.09856 1.10798 1.26536 1.42434 1.46814 1.57179 1.59206 1.84627 2.23538 2.28288 2.53072 2.92673 2.99528 3.21322 3.31692 3.47094 3.55757 3.82618 3.90699 3.97251 4.06015 4.16714 4.19552 4.23327 4.30956 4.41085 4.50424 4.54000 4.59733 4.81635 4.82463 4.83768 4.90578 4.96239 4.99020 5.04632 5.09273 5.10574 5.33966 5.41778 5.52961 5.88948 6.17835 6.19710 6.50252 7.06598 7.11493 7.25010 8.74530 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.001495 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.998337 B =18724.488013 C =19023.939031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.029 4.029 3 C 0.189 3.811 4 N -0.499 5.499 5 C 0.169 3.831 6 C 0.152 3.848 7 N -0.673 5.673 8 C 0.073 3.927 9 H 0.092 0.908 10 C -0.128 4.128 11 C 0.111 3.889 12 H 0.082 0.918 13 N -0.695 5.695 14 C 0.536 3.464 15 O -0.565 6.565 16 C -0.129 4.129 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 C -0.135 4.135 27 N -0.402 5.402 28 O 0.073 5.927 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.349 0.651 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -26.372 -26.198 37.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.068 4.068 3 C -0.031 4.031 4 N -0.232 5.232 5 C -0.105 4.105 6 C 0.021 3.979 7 N -0.306 5.306 8 C -0.037 4.037 9 H 0.110 0.890 10 C -0.166 4.166 11 C 0.005 3.995 12 H 0.100 0.900 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 C -0.175 4.175 27 N -0.111 5.111 28 O 0.014 5.986 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.253 0.747 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.530 -26.084 -24.373 35.985 hybrid contribution 2.406 1.286 -1.110 2.946 sum -2.124 -24.797 -25.484 35.621 Atomic orbital electron populations 1.21792 0.91977 1.04702 1.02264 1.20549 0.97454 0.80882 1.07890 1.29802 0.94159 0.99456 0.79701 1.71935 1.18550 1.02926 1.29807 1.25990 0.99978 0.96416 0.88072 1.20224 0.92438 0.87198 0.97999 1.60451 1.26023 1.19589 1.24559 1.23106 0.98674 0.88410 0.93497 0.88977 1.23506 1.01712 0.97420 0.93991 1.21742 0.90188 0.90183 0.97399 0.90019 1.45415 1.22824 1.44880 1.21706 1.20077 0.86909 0.79599 0.81161 1.90693 1.36119 1.65868 1.51575 1.23374 1.00341 1.01590 1.02758 1.85604 1.29707 1.55320 1.21874 1.23214 1.05479 1.30627 1.10186 0.89864 1.26125 1.01148 0.97618 0.94196 1.70185 1.35536 1.39052 1.10003 0.84952 0.77178 0.78114 0.77721 1.19290 1.20324 1.18202 1.23554 1.02114 0.95201 0.96631 1.74630 1.19430 1.01033 1.16023 1.85250 1.59692 1.17356 1.36253 0.93360 0.92091 0.88093 0.85123 0.86130 0.90869 0.87852 0.83122 0.87208 0.89026 0.74674 0.87170 0.87047 0.91996 0.92250 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.89 71.98 0.71 0.16 16 2 C -0.03 -0.11 6.56 29.84 0.20 0.08 16 3 C 0.19 2.56 7.77 88.38 0.69 3.25 16 4 N -0.50 -9.56 11.55 -303.19 -3.50 -13.06 16 5 C 0.17 3.21 7.73 138.46 1.07 4.28 16 6 C 0.15 2.33 6.15 85.56 0.53 2.85 16 7 N -0.67 -10.07 6.55 -492.38 -3.23 -13.30 16 8 C 0.07 1.03 4.03 45.53 0.18 1.21 16 9 H 0.09 1.09 7.87 -2.39 -0.02 1.07 16 10 C -0.13 -1.78 7.39 31.12 0.23 -1.55 16 11 C 0.11 2.45 4.32 45.52 0.20 2.64 16 12 H 0.08 2.27 7.46 -2.39 -0.02 2.25 16 13 N -0.69 -16.92 5.27 -440.04 -2.32 -19.24 16 14 C 0.54 19.63 7.85 87.66 0.69 20.32 16 15 O -0.56 -26.35 15.46 -3.01 -0.05 -26.40 16 16 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 17 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 18 C -0.55 -31.26 9.50 67.96 0.65 -30.62 16 19 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 22 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 26 C -0.14 -2.70 7.69 31.21 0.24 -2.46 16 27 N -0.40 -7.86 12.16 -60.31 -0.73 -8.59 16 28 O 0.07 1.19 11.31 74.81 0.85 2.04 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.13 -0.21 8.14 -2.39 -0.02 -0.22 16 33 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.07 0.92 8.13 -2.39 -0.02 0.91 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.35 4.80 8.54 -89.69 -0.77 4.04 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.42 7.07 8.70 -92.71 -0.81 6.27 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -81.89 392.03 -2.08 -83.97 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.53 Total: 17.70 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 6.28 Total: -3.21 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -9.49 Total: -110.07 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.80 Total: -24.36 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -81.89 -2.08 -83.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661392042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.613 kcal (2) G-P(sol) polarization free energy of solvation -81.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds