Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46830 * 304.97470 * 5 4 3 7 7 O 1.21286 * 120.00617 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99681 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99767 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46962 * 180.02562 * 9 8 6 11 11 N 1.46902 * 109.47169 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00626 * 66.03898 * 11 10 9 13 13 C 1.46903 * 110.99797 * 189.99839 * 11 10 9 14 14 C 1.50701 * 109.47030 * 169.99601 * 13 11 10 15 15 O 1.21295 * 120.00036 * 359.97438 * 14 13 11 16 16 N 1.34775 * 119.99994 * 179.97438 * 14 13 11 17 17 C 1.37093 * 120.00085 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00098 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00227 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99753 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00183 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46915 * 120.00603 * 21 19 17 24 24 H 1.48507 * 109.47145 * 240.00325 * 21 19 17 25 25 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 26 26 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47285 * 89.99792 * 1 2 3 28 28 H 1.09004 * 109.46739 * 209.99442 * 1 2 3 29 29 H 1.09000 * 109.47174 * 329.99386 * 1 2 3 30 30 H 1.08994 * 109.47031 * 64.97848 * 5 4 3 31 31 H 1.09002 * 109.46788 * 184.97707 * 5 4 3 32 32 H 0.96995 * 120.00110 * 0.02562 * 8 6 5 33 33 H 1.09003 * 109.47651 * 299.99956 * 9 8 6 34 34 H 1.08992 * 109.47438 * 60.00566 * 9 8 6 35 35 H 1.09008 * 109.46717 * 299.99797 * 10 9 8 36 36 H 1.08990 * 109.47648 * 59.99723 * 10 9 8 37 37 H 1.09006 * 109.46858 * 59.99857 * 12 11 10 38 38 H 1.09000 * 109.47454 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.46677 * 300.00832 * 12 11 10 40 40 H 1.09002 * 109.46872 * 289.99081 * 13 11 10 41 41 H 1.08997 * 109.47224 * 49.99353 * 13 11 10 42 42 H 0.97001 * 119.99883 * 359.97438 * 16 14 13 43 43 H 0.97003 * 119.99869 * 179.97438 * 20 19 17 44 44 H 1.07997 * 126.03698 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 6 4.2387 2.9359 -1.1630 7 8 3.3249 2.6809 -1.9186 8 7 4.9925 4.0351 -1.3640 9 6 4.7083 4.9212 -2.4954 10 6 5.7028 6.0840 -2.4948 11 7 5.4175 6.9729 -3.6290 12 6 4.1128 7.6288 -3.4687 13 6 6.4874 7.9645 -3.8028 14 6 6.2898 8.6933 -5.1070 15 8 5.3504 8.4138 -5.8216 16 7 7.1569 9.6555 -5.4793 17 6 6.9775 10.3181 -6.6660 18 1 6.1415 10.0688 -7.3027 19 6 7.8711 11.3106 -7.0496 20 7 8.8886 11.6136 -6.2751 21 14 7.6270 12.2130 -8.6669 22 1 6.4166 11.6883 -9.3486 23 1 7.4561 13.6643 -8.4030 24 1 8.8141 12.0040 -9.5344 25 6 3.9355 -0.4006 0.0004 26 16 2.4857 -1.4020 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.4362 2.5831 0.9324 31 1 5.5450 1.6353 -0.0876 32 1 5.7230 4.2393 -0.7596 33 1 4.8029 4.3631 -3.4269 34 1 3.6940 5.3103 -2.4064 35 1 5.6085 6.6422 -1.5633 36 1 6.7169 5.6948 -2.5840 37 1 4.1134 8.2199 -2.5528 38 1 3.9265 8.2807 -4.3222 39 1 3.3303 6.8721 -3.4122 40 1 6.4583 8.6784 -2.9797 41 1 7.4531 7.4591 -3.8116 42 1 7.9079 9.8792 -4.9076 43 1 9.5127 12.3062 -6.5431 44 1 4.9546 -0.7580 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663327582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = -18.320376 kcal Electronic energy + Delta-G solvation = -25637.627467 eV Core-core repulsion = 21717.250210 eV Total energy + Delta-G solvation = -3920.377257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.58058 -39.30835 -38.59553 -36.76092 -34.59339 -33.79795 -33.45367 -31.25165 -30.60517 -29.11412 -28.10093 -27.58552 -25.29504 -23.99762 -23.11994 -21.21534 -20.79496 -19.94821 -19.16271 -18.14530 -17.84377 -17.12157 -16.35170 -16.04536 -15.85617 -15.55395 -15.20419 -14.97948 -14.63134 -14.59216 -14.15434 -14.01651 -13.76305 -13.52664 -13.46967 -13.25903 -13.11274 -12.81090 -12.51547 -12.39192 -12.12252 -11.82316 -11.74417 -11.51408 -11.38178 -11.26741 -11.02500 -10.94421 -10.33510 -10.22099 -10.05120 -9.86263 -9.66890 -9.48418 -9.15487 -9.01820 -8.47133 -7.98291 -7.88095 -6.41551 -3.82132 0.39459 1.04530 1.39442 2.41297 2.54451 3.03581 3.16799 3.27517 3.35077 3.69578 3.90579 4.06769 4.28308 4.40837 4.63518 4.72693 4.86559 4.88720 4.94433 5.00156 5.02756 5.11368 5.14027 5.25250 5.34648 5.41170 5.50174 5.64729 5.70535 5.80929 5.87677 5.92291 5.94249 6.03047 6.26653 6.30475 6.57507 7.20540 7.31676 7.35870 7.50118 7.56033 8.07106 8.11843 8.62266 9.18839 9.54770 10.06727 10.76292 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.001471 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.898680 B =19025.912005 C =19331.783616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.449 5.449 4 C 0.090 3.910 5 C -0.067 4.067 6 C 0.515 3.485 7 O -0.518 6.518 8 N -0.732 5.732 9 C 0.123 3.877 10 C 0.045 3.955 11 N -0.515 5.515 12 C 0.018 3.982 13 C 0.047 3.953 14 C 0.444 3.556 15 O -0.576 6.576 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.259 4.259 26 S 0.109 5.891 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.398 0.602 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.015 0.985 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -23.405 19.910 31.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.225 4.225 3 N -0.163 5.163 4 C -0.043 4.043 5 C -0.109 4.109 6 C 0.300 3.700 7 O -0.393 6.393 8 N -0.385 5.385 9 C 0.000 4.000 10 C -0.084 4.084 11 N -0.240 5.240 12 C -0.130 4.130 13 C -0.084 4.084 14 C 0.229 3.771 15 O -0.460 6.460 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.398 4.398 26 S 0.363 5.637 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.232 0.768 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.080 0.920 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.060 -24.492 18.389 31.939 hybrid contribution 1.688 1.970 0.600 2.663 sum -7.371 -22.522 18.989 30.367 Atomic orbital electron populations 1.20457 0.85135 1.04084 1.04140 1.27049 1.01859 0.90563 1.03032 1.65998 1.04251 1.31286 1.14741 1.19533 0.90043 0.93007 1.01711 1.20231 0.98056 0.93518 0.99133 1.20236 0.82234 0.81281 0.86247 1.90764 1.29492 1.72531 1.46465 1.45902 1.35498 1.25806 1.31321 1.21310 0.99128 0.90458 0.89141 1.22251 0.99287 0.94087 0.92763 1.61439 1.02697 1.20456 1.39375 1.22627 0.90010 0.98975 1.01344 1.21867 0.95150 0.94107 0.97285 1.19715 0.85595 0.83504 0.88281 1.90497 1.32586 1.67679 1.55207 1.41865 1.25394 1.32321 1.20572 1.19759 1.11398 1.14677 0.96900 0.87830 1.25257 0.95483 0.97684 0.99547 1.69623 1.14536 1.32404 1.37831 0.85801 0.78434 0.78848 0.81272 1.19210 1.20801 1.20760 1.26743 1.03290 0.95665 1.14141 1.83918 0.97846 1.13107 1.68800 0.89399 0.90160 0.89193 0.87122 0.87159 0.76803 0.90389 0.91220 0.94580 0.90308 0.96621 0.88388 0.91839 0.93356 0.89329 0.77515 0.91959 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.12 16 2 C 0.05 0.52 7.39 -13.45 -0.10 0.42 16 3 N -0.45 -5.44 9.68 -8.05 -0.08 -5.52 16 4 C 0.09 0.91 5.63 -84.22 -0.47 0.44 16 5 C -0.07 -0.51 6.19 -29.03 -0.18 -0.69 16 6 C 0.52 5.93 7.80 -10.98 -0.09 5.84 16 7 O -0.52 -8.57 15.45 5.55 0.09 -8.49 16 8 N -0.73 -6.97 5.56 -60.30 -0.33 -7.30 16 9 C 0.12 1.52 5.60 -4.04 -0.02 1.50 16 10 C 0.05 0.54 5.07 -3.82 -0.02 0.52 16 11 N -0.52 -8.53 4.50 -244.36 -1.10 -9.63 16 12 C 0.02 0.30 8.96 60.06 0.54 0.84 16 13 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 14 C 0.44 10.44 7.47 -10.99 -0.08 10.36 16 15 O -0.58 -15.55 13.91 5.54 0.08 -15.48 16 16 N -0.56 -14.25 5.29 -10.96 -0.06 -14.30 16 17 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 18 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 21 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 C -0.26 -2.10 11.07 29.12 0.32 -1.78 16 26 S 0.11 0.82 23.18 -107.50 -2.49 -1.67 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.11 0.48 8.03 -51.93 -0.42 0.06 16 32 H 0.40 2.38 8.47 -40.82 -0.35 2.03 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.96 6.55 -51.93 -0.34 0.62 16 35 H 0.04 0.39 8.12 -51.92 -0.42 -0.04 16 36 H 0.08 0.84 7.93 -51.93 -0.41 0.42 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 1.97 5.83 -51.93 -0.30 1.67 16 39 H 0.06 0.96 6.47 -51.93 -0.34 0.63 16 40 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 41 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 42 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -36.59 385.50 -8.58 -45.18 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.20 Total: 8.92 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 0.01 Total: 10.17 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.85 Total: -60.51 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.16 Total: -23.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.59 -8.58 -45.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663327582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.856 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds