Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46830 * 304.97470 * 5 4 3 7 7 O 1.21286 * 120.00617 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99681 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99767 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.46962 * 180.02562 * 9 8 6 11 11 N 1.46902 * 109.47169 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00626 * 66.03898 * 11 10 9 13 13 C 1.46903 * 110.99797 * 189.99839 * 11 10 9 14 14 C 1.50701 * 109.47030 * 169.99601 * 13 11 10 15 15 O 1.21295 * 120.00036 * 359.97438 * 14 13 11 16 16 N 1.34775 * 119.99994 * 179.97438 * 14 13 11 17 17 C 1.37093 * 120.00085 * 179.97438 * 16 14 13 18 18 H 1.08005 * 120.00098 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00227 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99753 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00183 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47096 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46915 * 120.00603 * 21 19 17 24 24 H 1.48507 * 109.47145 * 240.00325 * 21 19 17 25 25 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 26 26 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47285 * 89.99792 * 1 2 3 28 28 H 1.09004 * 109.46739 * 209.99442 * 1 2 3 29 29 H 1.09000 * 109.47174 * 329.99386 * 1 2 3 30 30 H 1.08994 * 109.47031 * 64.97848 * 5 4 3 31 31 H 1.09002 * 109.46788 * 184.97707 * 5 4 3 32 32 H 0.96995 * 120.00110 * 0.02562 * 8 6 5 33 33 H 1.09003 * 109.47651 * 299.99956 * 9 8 6 34 34 H 1.08992 * 109.47438 * 60.00566 * 9 8 6 35 35 H 1.09008 * 109.46717 * 299.99797 * 10 9 8 36 36 H 1.08990 * 109.47648 * 59.99723 * 10 9 8 37 37 H 1.09006 * 109.46858 * 59.99857 * 12 11 10 38 38 H 1.09000 * 109.47454 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.46677 * 300.00832 * 12 11 10 40 40 H 1.09002 * 109.46872 * 289.99081 * 13 11 10 41 41 H 1.08997 * 109.47224 * 49.99353 * 13 11 10 42 42 H 0.97001 * 119.99883 * 359.97438 * 16 14 13 43 43 H 0.97003 * 119.99869 * 179.97438 * 20 19 17 44 44 H 1.07997 * 126.03698 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 6 4.2387 2.9359 -1.1630 7 8 3.3249 2.6809 -1.9186 8 7 4.9925 4.0351 -1.3640 9 6 4.7083 4.9212 -2.4954 10 6 5.7028 6.0840 -2.4948 11 7 5.4175 6.9729 -3.6290 12 6 4.1128 7.6288 -3.4687 13 6 6.4874 7.9645 -3.8028 14 6 6.2898 8.6933 -5.1070 15 8 5.3504 8.4138 -5.8216 16 7 7.1569 9.6555 -5.4793 17 6 6.9775 10.3181 -6.6660 18 1 6.1415 10.0688 -7.3027 19 6 7.8711 11.3106 -7.0496 20 7 8.8886 11.6136 -6.2751 21 14 7.6270 12.2130 -8.6669 22 1 6.4166 11.6883 -9.3486 23 1 7.4561 13.6643 -8.4030 24 1 8.8141 12.0040 -9.5344 25 6 3.9355 -0.4006 0.0004 26 16 2.4857 -1.4020 -0.0006 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 4.4362 2.5831 0.9324 31 1 5.5450 1.6353 -0.0876 32 1 5.7230 4.2393 -0.7596 33 1 4.8029 4.3631 -3.4269 34 1 3.6940 5.3103 -2.4064 35 1 5.6085 6.6422 -1.5633 36 1 6.7169 5.6948 -2.5840 37 1 4.1134 8.2199 -2.5528 38 1 3.9265 8.2807 -4.3222 39 1 3.3303 6.8721 -3.4122 40 1 6.4583 8.6784 -2.9797 41 1 7.4531 7.4591 -3.8116 42 1 7.9079 9.8792 -4.9076 43 1 9.5127 12.3062 -6.5431 44 1 4.9546 -0.7580 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663327582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = -48.224494 kcal Electronic energy + Delta-G solvation = -25638.924207 eV Core-core repulsion = 21717.250210 eV Total energy + Delta-G solvation = -3921.673997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.31230 -40.43948 -40.00762 -38.14788 -36.00005 -35.44685 -34.07050 -33.27048 -31.42673 -30.05308 -29.12586 -28.58928 -26.98042 -25.36744 -23.87765 -22.32443 -21.69020 -20.95933 -20.58427 -19.84967 -18.84973 -18.01194 -17.61161 -17.28947 -16.89802 -16.55616 -16.48084 -16.04800 -15.88497 -15.83902 -15.55040 -15.12702 -15.00746 -14.55981 -14.52772 -14.33113 -14.02435 -13.77886 -13.49017 -13.45600 -13.09382 -13.03831 -12.98690 -12.86038 -12.56666 -12.55651 -12.39051 -12.34077 -12.13888 -12.07708 -11.46054 -10.98387 -10.52878 -10.30353 -10.28586 -10.08267 -9.98492 -9.61957 -9.23920 -8.45904 -5.94001 -0.21893 0.47229 0.78412 1.36688 1.42068 1.55928 1.69274 1.72298 2.07201 2.17417 2.32578 2.94501 3.15432 3.21242 3.43257 3.79075 3.85908 4.05433 4.09997 4.20300 4.26280 4.36506 4.37576 4.47182 4.49415 4.53513 4.54810 4.63218 4.63317 4.63983 4.79429 4.88673 4.95612 5.01228 5.19868 5.25004 5.41416 5.42769 5.85794 6.05044 6.17253 6.60090 6.62678 6.88440 7.14900 7.33116 7.58420 8.15079 8.71649 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.035893 B = 0.001471 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.898680 B =19025.912005 C =19331.783616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.029 3.971 3 N -0.493 5.493 4 C 0.058 3.942 5 C -0.058 4.058 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.714 5.714 9 C 0.132 3.868 10 C 0.054 3.946 11 N -0.541 5.541 12 C 0.025 3.975 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.617 6.617 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.258 4.258 26 S 0.141 5.859 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.420 0.580 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 -24.333 21.831 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.249 4.249 3 N -0.208 5.208 4 C -0.074 4.074 5 C -0.100 4.100 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.369 5.369 9 C 0.007 3.993 10 C -0.074 4.074 11 N -0.266 5.266 12 C -0.123 4.123 13 C -0.070 4.070 14 C 0.226 3.774 15 O -0.503 6.503 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.397 4.397 26 S 0.396 5.604 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.167 0.833 32 H 0.257 0.743 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.134 0.866 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.242 -25.417 20.372 33.369 hybrid contribution 1.104 2.162 0.030 2.428 sum -6.138 -23.255 20.401 31.539 Atomic orbital electron populations 1.20563 0.83801 1.05118 1.04373 1.27520 1.03139 0.91205 1.03073 1.66028 1.05639 1.32988 1.16160 1.19959 0.89970 0.94529 1.02923 1.20347 0.99409 0.92400 0.97875 1.21006 0.81195 0.81555 0.86512 1.90743 1.32078 1.73954 1.48789 1.45700 1.35744 1.24794 1.30634 1.21013 0.98449 0.90695 0.89103 1.22250 1.00078 0.92970 0.92075 1.61323 1.02196 1.20651 1.42406 1.22448 0.90734 0.98766 1.00322 1.21738 0.96632 0.94583 0.94046 1.20854 0.84076 0.82584 0.89840 1.90480 1.34058 1.68612 1.57147 1.41919 1.26101 1.32987 1.20161 1.19677 1.11661 1.16546 0.98288 0.90528 1.25989 0.94896 0.97751 1.02514 1.69672 1.14751 1.32673 1.38965 0.84897 0.78205 0.77924 0.77458 1.20046 1.19589 1.19595 1.27172 1.04845 0.95182 1.12513 1.83721 0.97156 1.11722 1.67805 0.89476 0.87588 0.89724 0.85000 0.83269 0.74264 0.93120 0.93153 0.91998 0.88033 0.94600 0.92549 0.91199 0.90878 0.86572 0.76916 0.91333 0.77569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.46 71.24 0.75 -0.26 16 2 C 0.03 0.55 7.39 88.52 0.65 1.20 16 3 N -0.49 -12.01 9.68 -179.39 -1.74 -13.74 16 4 C 0.06 1.12 5.63 41.52 0.23 1.35 16 5 C -0.06 -0.76 6.19 29.10 0.18 -0.58 16 6 C 0.51 11.21 7.80 87.66 0.68 11.89 16 7 O -0.58 -19.57 15.45 -3.05 -0.05 -19.62 16 8 N -0.71 -12.14 5.56 -463.06 -2.57 -14.71 16 9 C 0.13 3.14 5.60 86.38 0.48 3.62 16 10 C 0.05 1.14 5.07 86.30 0.44 1.58 16 11 N -0.54 -17.20 4.50 -927.03 -4.17 -21.37 16 12 C 0.03 0.83 8.96 127.69 1.14 1.98 16 13 C 0.06 2.02 5.45 85.56 0.47 2.49 16 14 C 0.44 20.85 7.47 87.66 0.66 21.51 16 15 O -0.62 -34.53 13.91 -3.07 -0.04 -34.57 16 16 N -0.57 -29.31 5.29 -306.98 -1.62 -30.94 16 17 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 21 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C -0.26 -3.65 11.07 66.78 0.74 -2.91 16 26 S 0.14 1.96 23.18 -56.49 -1.31 0.65 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.15 0.68 8.03 -2.39 -0.02 0.66 16 32 H 0.42 3.48 8.47 -92.71 -0.79 2.70 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.40 6.55 -2.39 -0.02 1.38 16 35 H 0.06 1.05 8.12 -2.38 -0.02 1.03 16 36 H 0.10 1.73 7.93 -2.39 -0.02 1.71 16 37 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.06 2.35 5.83 -2.39 -0.01 2.33 16 39 H 0.07 2.16 6.47 -2.39 -0.02 2.15 16 40 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 41 H 0.12 3.25 7.93 -2.39 -0.02 3.23 16 42 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 43 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 44 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -84.04 385.50 -1.96 -86.00 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: -0.47 Total: 28.53 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 7.70 Total: 23.57 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -9.82 Total: -129.81 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.09 Total: -54.18 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.31 Total: 0.65 kcal Total: -84.04 -1.96 -86.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663327582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.777 kcal (2) G-P(sol) polarization free energy of solvation -84.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds