Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29940 * 126.28593 * 2 1 4 4 O 1.21299 * 110.25396 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.80895 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.55345 * 180.26346 * 5 4 3 7 7 N 1.46899 * 109.46927 * 269.69519 * 6 5 4 8 8 C 1.47901 * 111.00140 * 69.87654 * 7 6 5 9 9 C 1.53994 * 107.05347 * 214.15278 * 8 7 6 10 10 C 1.54593 * 105.14228 * 1.22223 * 9 8 7 11 11 H 1.09002 * 110.72563 * 263.59917 * 10 9 8 12 12 C 1.53007 * 110.72563 * 140.49424 * 10 9 8 13 13 N 1.46496 * 109.46844 * 66.45252 * 12 10 9 14 14 C 1.34780 * 119.99743 * 179.97438 * 13 12 10 15 15 O 1.21286 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47361 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00220 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00025 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00492 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99600 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47315 * 59.99792 * 22 20 18 24 24 H 1.48504 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47011 * 299.99335 * 22 20 18 26 26 C 1.48525 * 111.00098 * 312.47312 * 7 6 5 27 27 N 1.31134 * 106.89611 * 0.02562 * 5 4 3 28 28 H 1.09001 * 109.47380 * 270.02765 * 1 2 3 29 29 H 1.09001 * 109.47001 * 30.03507 * 1 2 3 30 30 H 1.09003 * 109.46902 * 150.02958 * 1 2 3 31 31 H 1.09007 * 109.46611 * 29.69262 * 6 5 4 32 32 H 1.08999 * 109.47203 * 149.69394 * 6 5 4 33 33 H 1.08999 * 109.91642 * 333.50097 * 8 7 6 34 34 H 1.08995 * 109.91836 * 94.80272 * 8 7 6 35 35 H 1.08999 * 110.30955 * 120.13772 * 9 8 7 36 36 H 1.09001 * 110.31082 * 242.30517 * 9 8 7 37 37 H 1.09001 * 109.47116 * 186.45283 * 12 10 9 38 38 H 1.08995 * 109.46711 * 306.45522 * 12 10 9 39 39 H 0.96996 * 120.00545 * 0.02562 * 13 12 10 40 40 H 1.09001 * 109.47735 * 300.00043 * 16 14 13 41 41 H 1.09007 * 109.46947 * 60.00175 * 16 14 13 42 42 H 0.97001 * 120.00295 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.66908 * 278.15828 * 26 7 6 44 44 H 1.09001 * 110.67091 * 41.28865 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0015 6 6 4.7970 -1.4370 0.0079 7 7 5.2113 -1.7088 -1.3750 8 6 5.6864 -0.4751 -2.0382 9 6 5.2808 -0.5742 -3.5204 10 6 4.5248 -1.9171 -3.6432 11 1 5.1924 -2.7051 -3.9919 12 6 3.3211 -1.7774 -4.5774 13 7 3.7890 -1.5208 -5.9417 14 6 2.8984 -1.3625 -6.9409 15 8 1.7097 -1.4320 -6.7104 16 6 3.3796 -1.0980 -8.3442 17 16 1.9557 -0.9328 -9.4493 18 6 2.7854 -0.6385 -10.9756 19 1 3.8645 -0.6079 -11.0065 20 6 2.0521 -0.4462 -12.1383 21 7 0.7368 -0.4840 -12.1008 22 14 2.9318 -0.1349 -13.7566 23 1 3.8095 -1.2901 -14.0731 24 1 1.9301 0.0364 -14.8395 25 1 3.7548 1.0960 -13.6438 26 6 4.0662 -2.1908 -2.1888 27 7 2.3030 -1.0841 0.0009 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5144 30 1 -0.3633 -0.8903 -0.5134 31 1 5.5833 -0.8827 0.5206 32 1 4.6197 -2.3794 0.5260 33 1 5.2165 0.3962 -1.5821 34 1 6.7707 -0.4023 -1.9541 35 1 4.6259 0.2545 -3.7896 36 1 6.1665 -0.5793 -4.1556 37 1 2.7389 -2.6988 -4.5601 38 1 2.6977 -0.9474 -4.2449 39 1 4.7396 -1.4655 -6.1261 40 1 3.9611 -0.1762 -8.3613 41 1 4.0038 -1.9275 -8.6767 42 1 0.2244 -0.3499 -12.9134 43 1 3.9037 -3.2570 -2.0309 44 1 3.1640 -1.6246 -1.9569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663560416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 38.202537 kcal Electronic energy + Delta-G solvation = -26653.176053 eV Core-core repulsion = 22735.249814 eV Total energy + Delta-G solvation = -3917.926239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.01749 -40.04781 -38.91950 -36.49538 -35.46934 -33.71511 -32.43146 -31.97945 -30.14711 -29.61265 -29.03188 -27.27262 -25.53397 -24.74012 -24.03187 -22.45884 -21.19143 -20.65736 -20.23010 -18.68438 -17.85099 -17.83887 -16.86690 -16.52082 -16.18486 -15.52300 -15.36111 -14.96627 -14.81041 -14.80516 -14.40980 -13.97000 -13.90980 -13.77414 -13.54674 -13.17379 -13.12914 -12.77673 -12.63822 -12.50687 -12.31146 -12.05226 -11.87766 -11.74911 -11.51413 -11.43712 -11.21901 -11.04937 -11.03945 -10.89771 -10.76947 -10.32598 -9.82930 -9.42853 -9.29445 -9.06733 -8.90851 -8.24456 -6.50530 -6.21720 -3.92549 0.69716 1.80327 2.35430 2.99788 3.08895 3.17283 3.23310 3.26645 3.29435 3.39482 3.65068 3.69751 4.13796 4.20288 4.22399 4.36806 4.54684 4.60593 4.79167 4.93493 4.98602 5.01017 5.02962 5.07783 5.13251 5.16797 5.20759 5.28692 5.32144 5.45466 5.50056 5.52786 5.58626 5.62924 5.67285 5.79673 5.88269 5.91645 6.13006 6.19359 6.22244 6.58767 7.58893 7.69033 7.76426 8.34739 8.60078 9.23337 10.85658 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002042 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.347045 B =13708.951871 C =14537.514663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.169 3.831 3 N -0.383 5.383 4 O 0.078 5.922 5 C 0.143 3.857 6 C 0.136 3.864 7 N -0.492 5.492 8 C 0.025 3.975 9 C -0.130 4.130 10 C -0.103 4.103 11 H 0.095 0.905 12 C 0.132 3.868 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.034 3.966 27 N -0.470 5.470 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.126 0.874 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.269 0.731 43 H 0.095 0.905 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.867 -1.792 27.849 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 N -0.091 5.091 4 O 0.020 5.980 5 C -0.080 4.080 6 C 0.005 3.995 7 N -0.215 5.215 8 C -0.102 4.102 9 C -0.168 4.168 10 C -0.122 4.122 11 H 0.113 0.887 12 C 0.008 3.992 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.094 4.094 27 N -0.205 5.205 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.475 -1.766 28.172 29.473 hybrid contribution 1.855 0.943 -1.355 2.483 sum 10.330 -0.823 26.817 28.750 Atomic orbital electron populations 1.20190 0.82723 1.05172 1.04298 1.25999 1.00776 0.83333 1.00216 1.74653 0.89427 1.23995 1.21051 1.85331 1.22510 1.24907 1.65253 1.30166 0.98453 0.82601 0.96766 1.21423 0.86483 0.97951 0.93613 1.65161 1.29256 1.26730 1.00371 1.23086 1.01844 0.90931 0.94382 1.22529 1.01003 0.97571 0.95731 1.22337 0.97056 0.98406 0.94441 0.88685 1.21185 0.95203 1.01621 0.81230 1.45949 1.09923 1.75716 1.07602 1.20328 0.86183 0.75546 0.86236 1.90706 1.16203 1.48516 1.83771 1.23525 1.06883 1.04562 0.95377 1.85405 1.04325 1.93630 1.00043 1.22825 0.94999 1.56904 0.93689 0.90970 1.24996 0.94925 0.94687 0.98982 1.70008 1.04941 1.46303 1.29061 0.86222 0.79056 0.78904 0.81302 1.19920 1.20807 1.19938 1.23444 0.92289 1.02270 0.91357 1.71964 0.99672 1.29551 1.19308 0.89277 0.89291 0.88717 0.86778 0.85610 0.92972 0.89051 0.90860 0.90148 0.91289 0.92066 0.76801 0.89257 0.89182 0.92119 0.88646 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.17 1.76 8.22 -156.38 -1.28 0.48 16 3 N -0.38 -4.40 12.16 30.90 0.38 -4.02 16 4 O 0.08 0.78 10.39 18.10 0.19 0.96 16 5 C 0.14 1.19 5.68 -13.06 -0.07 1.12 16 6 C 0.14 0.70 6.11 -4.98 -0.03 0.67 16 7 N -0.49 -3.17 5.54 -231.90 -1.28 -4.45 16 8 C 0.03 0.16 6.46 -2.75 -0.02 0.14 16 9 C -0.13 -0.97 6.20 -25.38 -0.16 -1.13 16 10 C -0.10 -0.84 3.12 -88.76 -0.28 -1.12 16 11 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 12 C 0.13 1.54 5.02 -4.04 -0.02 1.52 16 13 N -0.74 -9.69 5.40 -60.29 -0.33 -10.01 16 14 C 0.53 9.95 7.85 -10.99 -0.09 9.86 16 15 O -0.52 -11.93 15.86 5.55 0.09 -11.84 16 16 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.03 0.27 5.75 -1.90 -0.01 0.26 16 27 N -0.47 -4.72 10.31 -9.87 -0.10 -4.83 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 0.32 8.08 -51.92 -0.42 -0.10 16 32 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.37 6.32 -51.93 -0.33 0.04 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.66 7.80 -51.93 -0.41 0.26 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.40 4.02 8.33 -40.82 -0.34 3.68 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.59 5.26 -51.93 -0.27 0.32 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -36.42 379.93 -9.38 -45.80 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.38 Total: -0.17 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.16 Total: -4.16 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.60 Total: -48.86 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.28 Total: -10.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.42 -9.38 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663560416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.001 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds