Wall clock time and date at job start Sat Apr 11 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29940 * 126.28593 * 2 1 4 4 O 1.21299 * 110.25396 * 179.97438 * 3 2 1 5 5 C 1.33644 * 109.80895 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.55345 * 180.26346 * 5 4 3 7 7 N 1.46899 * 109.46927 * 269.69519 * 6 5 4 8 8 C 1.47901 * 111.00140 * 69.87654 * 7 6 5 9 9 C 1.53994 * 107.05347 * 214.15278 * 8 7 6 10 10 C 1.54593 * 105.14228 * 1.22223 * 9 8 7 11 11 H 1.09002 * 110.72563 * 263.59917 * 10 9 8 12 12 C 1.53007 * 110.72563 * 140.49424 * 10 9 8 13 13 N 1.46496 * 109.46844 * 66.45252 * 12 10 9 14 14 C 1.34780 * 119.99743 * 179.97438 * 13 12 10 15 15 O 1.21286 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00065 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47361 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00220 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00025 * 0.02562 * 18 17 16 20 20 C 1.38798 * 119.99740 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00492 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99600 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47315 * 59.99792 * 22 20 18 24 24 H 1.48504 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47011 * 299.99335 * 22 20 18 26 26 C 1.48525 * 111.00098 * 312.47312 * 7 6 5 27 27 N 1.31134 * 106.89611 * 0.02562 * 5 4 3 28 28 H 1.09001 * 109.47380 * 270.02765 * 1 2 3 29 29 H 1.09001 * 109.47001 * 30.03507 * 1 2 3 30 30 H 1.09003 * 109.46902 * 150.02958 * 1 2 3 31 31 H 1.09007 * 109.46611 * 29.69262 * 6 5 4 32 32 H 1.08999 * 109.47203 * 149.69394 * 6 5 4 33 33 H 1.08999 * 109.91642 * 333.50097 * 8 7 6 34 34 H 1.08995 * 109.91836 * 94.80272 * 8 7 6 35 35 H 1.08999 * 110.30955 * 120.13772 * 9 8 7 36 36 H 1.09001 * 110.31082 * 242.30517 * 9 8 7 37 37 H 1.09001 * 109.47116 * 186.45283 * 12 10 9 38 38 H 1.08995 * 109.46711 * 306.45522 * 12 10 9 39 39 H 0.96996 * 120.00545 * 0.02562 * 13 12 10 40 40 H 1.09001 * 109.47735 * 300.00043 * 16 14 13 41 41 H 1.09007 * 109.46947 * 60.00175 * 16 14 13 42 42 H 0.97001 * 120.00295 * 180.02562 * 21 20 18 43 43 H 1.09000 * 110.66908 * 278.15828 * 26 7 6 44 44 H 1.09001 * 110.67091 * 41.28865 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6211 0.0015 6 6 4.7970 -1.4370 0.0079 7 7 5.2113 -1.7088 -1.3750 8 6 5.6864 -0.4751 -2.0382 9 6 5.2808 -0.5742 -3.5204 10 6 4.5248 -1.9171 -3.6432 11 1 5.1924 -2.7051 -3.9919 12 6 3.3211 -1.7774 -4.5774 13 7 3.7890 -1.5208 -5.9417 14 6 2.8984 -1.3625 -6.9409 15 8 1.7097 -1.4320 -6.7104 16 6 3.3796 -1.0980 -8.3442 17 16 1.9557 -0.9328 -9.4493 18 6 2.7854 -0.6385 -10.9756 19 1 3.8645 -0.6079 -11.0065 20 6 2.0521 -0.4462 -12.1383 21 7 0.7368 -0.4840 -12.1008 22 14 2.9318 -0.1349 -13.7566 23 1 3.8095 -1.2901 -14.0731 24 1 1.9301 0.0364 -14.8395 25 1 3.7548 1.0960 -13.6438 26 6 4.0662 -2.1908 -2.1888 27 7 2.3030 -1.0841 0.0009 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5144 30 1 -0.3633 -0.8903 -0.5134 31 1 5.5833 -0.8827 0.5206 32 1 4.6197 -2.3794 0.5260 33 1 5.2165 0.3962 -1.5821 34 1 6.7707 -0.4023 -1.9541 35 1 4.6259 0.2545 -3.7896 36 1 6.1665 -0.5793 -4.1556 37 1 2.7389 -2.6988 -4.5601 38 1 2.6977 -0.9474 -4.2449 39 1 4.7396 -1.4655 -6.1261 40 1 3.9611 -0.1762 -8.3613 41 1 4.0038 -1.9275 -8.6767 42 1 0.2244 -0.3499 -12.9134 43 1 3.9037 -3.2570 -2.0309 44 1 3.1640 -1.6246 -1.9569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663560416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:40 Heat of formation + Delta-G solvation = 9.086347 kcal Electronic energy + Delta-G solvation = -26654.438626 eV Core-core repulsion = 22735.249814 eV Total energy + Delta-G solvation = -3919.188812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.75339 -40.95580 -40.09224 -37.22217 -36.46958 -34.63136 -34.57638 -32.85877 -31.19230 -30.29750 -30.04384 -28.03405 -27.63148 -25.68263 -24.74477 -23.12220 -22.03726 -21.43019 -21.37199 -19.85227 -19.40092 -18.55026 -17.86038 -17.66734 -17.25069 -16.88479 -16.63904 -16.34732 -15.99416 -15.68073 -15.32402 -15.11322 -14.71740 -14.59256 -14.56425 -14.41879 -14.34743 -13.79702 -13.55274 -13.41203 -13.19759 -13.17845 -12.94253 -12.86645 -12.63590 -12.53156 -12.43476 -12.18452 -12.15423 -11.99032 -11.74854 -11.53943 -11.13424 -11.06022 -10.99757 -10.29243 -10.19076 -9.85697 -8.68414 -8.35109 -6.13836 0.01465 1.07655 1.25642 1.43886 1.46139 1.55882 1.57348 1.75563 2.21439 2.27477 2.56258 2.83824 2.98954 3.00161 3.29852 3.53180 3.54534 3.70430 3.90053 3.98487 4.14286 4.20811 4.26829 4.30195 4.32670 4.41152 4.48273 4.49296 4.54141 4.56919 4.63993 4.69531 4.73438 4.83820 4.87182 4.98920 5.02045 5.10065 5.19370 5.37676 5.40974 5.61165 5.70703 6.19035 6.46857 7.05859 7.05898 7.20715 8.73934 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019000 B = 0.002042 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.347045 B =13708.951871 C =14537.514663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.157 3.843 3 N -0.412 5.412 4 O 0.071 5.929 5 C 0.153 3.847 6 C 0.135 3.865 7 N -0.484 5.484 8 C 0.026 3.974 9 C -0.131 4.131 10 C -0.092 4.092 11 H 0.113 0.887 12 C 0.135 3.865 13 N -0.708 5.708 14 C 0.532 3.468 15 O -0.569 6.569 16 C -0.128 4.128 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.036 3.964 27 N -0.490 5.490 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.043 0.957 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.418 0.582 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.271 0.729 43 H 0.102 0.898 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.326 -2.299 28.361 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.115 4.115 3 N -0.122 5.122 4 O 0.015 5.985 5 C -0.069 4.069 6 C 0.004 3.996 7 N -0.206 5.206 8 C -0.101 4.101 9 C -0.169 4.169 10 C -0.111 4.111 11 H 0.132 0.868 12 C 0.011 3.989 13 N -0.362 5.362 14 C 0.318 3.682 15 O -0.447 6.447 16 C -0.279 4.279 17 S 0.072 5.928 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.093 4.093 27 N -0.225 5.225 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.062 0.938 34 H 0.132 0.868 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.255 0.745 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.009 -2.282 28.723 31.216 hybrid contribution 0.835 1.064 -1.379 1.932 sum 12.844 -1.218 27.344 30.234 Atomic orbital electron populations 1.20317 0.81245 1.05329 1.05532 1.26542 1.01964 0.83330 0.99684 1.74632 0.90099 1.24925 1.22580 1.85288 1.21979 1.25713 1.65502 1.30850 0.99060 0.82145 0.94854 1.21831 0.85874 0.98660 0.93214 1.65202 1.28082 1.26632 1.00698 1.23139 1.03054 0.90532 0.93371 1.22548 1.01161 0.96102 0.97091 1.22260 0.95590 0.99582 0.93672 0.86838 1.21237 0.96742 1.00228 0.80706 1.45657 1.10209 1.73273 1.07095 1.20139 0.85969 0.75463 0.86664 1.90696 1.18421 1.51220 1.84385 1.23359 1.03586 1.06517 0.94431 1.85617 1.10298 1.94038 1.02866 1.23171 0.95528 1.56790 0.93879 0.89764 1.26158 0.95690 0.94068 1.03350 1.70182 1.06932 1.47514 1.30244 0.84991 0.77817 0.79426 0.75680 1.18528 1.20470 1.18615 1.23380 0.92044 1.02426 0.91414 1.71976 1.00440 1.29713 1.20359 0.87446 0.89210 0.88408 0.83805 0.83983 0.93813 0.86828 0.92956 0.88225 0.92196 0.94219 0.74474 0.87148 0.86908 0.91995 0.87972 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.51 71.24 0.75 -0.24 16 2 C 0.16 3.34 8.22 138.47 1.14 4.48 16 3 N -0.41 -9.65 12.16 -60.34 -0.73 -10.39 16 4 O 0.07 1.41 10.39 74.83 0.78 2.19 16 5 C 0.15 2.42 5.68 88.38 0.50 2.92 16 6 C 0.13 1.04 6.11 85.56 0.52 1.56 16 7 N -0.48 -4.88 5.54 -887.59 -4.91 -9.79 16 8 C 0.03 0.27 6.46 86.45 0.56 0.82 16 9 C -0.13 -1.64 6.20 31.47 0.19 -1.45 16 10 C -0.09 -1.31 3.12 -9.59 -0.03 -1.34 16 11 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 12 C 0.14 3.08 5.02 86.38 0.43 3.52 16 13 N -0.71 -17.57 5.40 -463.06 -2.50 -20.07 16 14 C 0.53 19.77 7.85 87.66 0.69 20.46 16 15 O -0.57 -27.02 15.86 -3.05 -0.05 -27.06 16 16 C -0.13 -5.03 6.16 71.23 0.44 -4.59 16 17 S -0.16 -8.69 20.57 -56.49 -1.16 -9.86 16 18 C -0.55 -31.19 9.50 67.95 0.65 -30.55 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.69 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 22 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 26 C 0.04 0.51 5.75 86.65 0.50 1.00 16 27 N -0.49 -9.77 10.31 -303.20 -3.13 -12.89 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.14 0.29 8.08 -2.38 -0.02 0.27 16 32 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.04 0.54 6.32 -2.39 -0.02 0.52 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.90 7.80 -2.39 -0.02 0.88 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.10 8.07 -2.39 -0.02 1.08 16 39 H 0.42 7.19 8.33 -92.71 -0.77 6.42 16 40 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.04 0.74 5.26 -2.39 -0.01 0.73 16 Total: -1.00 -82.69 379.93 -2.33 -85.02 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.26 Total: 15.69 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 6.80 Total: -2.26 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -10.99 Total: -109.27 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: 0.73 Total: -24.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -82.69 -2.33 -85.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663560416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.105 kcal (2) G-P(sol) polarization free energy of solvation -82.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds