Wall clock time and date at job start Sat Apr 11 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.47442 * 2 1 4 4 N 1.29946 * 126.28645 * 90.02739 * 3 2 1 5 5 O 1.21304 * 110.24699 * 179.73859 * 4 3 2 6 6 C 1.33634 * 109.81499 * 359.97438 * 5 4 3 7 7 C 1.50701 * 126.55128 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47273 * 164.97315 * 7 6 5 9 9 C 1.52995 * 109.47218 * 284.97377 * 7 6 5 10 10 N 1.46901 * 109.47346 * 44.97674 * 7 6 5 11 11 C 1.47480 * 111.00243 * 164.61152 * 10 7 6 12 12 C 1.53506 * 87.93223 * 221.29582 * 11 10 7 13 13 N 1.46495 * 114.17081 * 272.37963 * 12 11 10 14 14 C 1.34788 * 120.00088 * 248.84082 * 13 12 11 15 15 O 1.21277 * 119.99442 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00036 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.46654 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99891 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99804 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00220 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00025 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.46927 * 60.00156 * 22 20 18 24 24 H 1.48497 * 109.47299 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47378 * 300.00526 * 22 20 18 26 26 C 1.47482 * 110.99987 * 68.63955 * 10 7 6 27 27 N 1.31131 * 106.90058 * 0.02562 * 6 5 4 28 28 H 1.08996 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46336 * 300.00083 * 1 2 3 30 30 H 1.09002 * 109.47017 * 59.99548 * 1 2 3 31 31 H 1.09001 * 109.46664 * 239.99669 * 2 1 3 32 32 H 1.09002 * 109.47017 * 120.00452 * 2 1 3 33 33 H 1.08996 * 109.47776 * 185.24773 * 9 7 6 34 34 H 1.09004 * 109.47395 * 305.24827 * 9 7 6 35 35 H 1.09003 * 109.47298 * 65.24964 * 9 7 6 36 36 H 1.08997 * 113.47341 * 336.06534 * 11 10 7 37 37 H 1.08994 * 113.47311 * 106.52899 * 11 10 7 38 38 H 1.09001 * 114.17208 * 139.66891 * 12 11 10 39 39 H 0.96996 * 120.00559 * 68.83684 * 13 12 11 40 40 H 1.08999 * 109.47028 * 299.99846 * 16 14 13 41 41 H 1.08999 * 109.46995 * 60.00647 * 16 14 13 42 42 H 0.96993 * 120.00018 * 180.02562 * 21 20 18 43 43 H 1.09004 * 113.47270 * 253.47500 * 26 10 7 44 44 H 1.08999 * 113.47446 * 23.87971 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2893 2.1456 1.0474 5 8 2.6828 3.2431 0.7123 6 6 2.7157 3.3247 -0.6211 7 6 3.1449 4.5169 -1.4369 8 1 3.3202 4.2080 -2.4675 9 6 2.0456 5.5804 -1.4033 10 7 4.3828 5.0743 -0.8757 11 6 5.0304 5.9917 -1.8318 12 6 6.3766 5.3762 -1.4251 13 7 7.0036 6.0170 -0.2666 14 6 8.1328 6.7361 -0.4233 15 8 8.6299 6.8522 -1.5234 16 6 8.7775 7.3957 0.7684 17 16 10.2653 8.2792 0.2373 18 6 10.7996 8.9354 1.7828 19 1 10.2328 8.7341 2.6799 20 6 11.9493 9.7103 1.8476 21 7 12.6403 9.9553 0.7544 22 14 12.5161 10.4054 3.4862 23 1 12.7806 9.2911 4.4317 24 1 13.7605 11.1908 3.2869 25 1 11.4580 11.2861 4.0429 26 6 5.5165 4.1529 -1.0778 27 7 2.3032 2.1693 -1.0841 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.3143 6.4020 -2.0673 34 1 1.1041 5.1404 -1.7325 35 1 1.9349 5.9566 -0.3863 36 1 4.7604 5.7984 -2.8700 37 1 4.9334 7.0425 -1.5590 38 1 7.0638 5.2170 -2.2561 39 1 6.6062 5.9239 0.6133 40 1 8.0769 8.1001 1.2170 41 1 9.0488 6.6361 1.5016 42 1 13.4440 10.4965 0.7998 43 1 5.8314 3.6454 -0.1659 44 1 5.3758 3.4682 -1.9141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665099496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:47 Heat of formation + Delta-G solvation = 39.966077 kcal Electronic energy + Delta-G solvation = -26251.313168 eV Core-core repulsion = 22333.463402 eV Total energy + Delta-G solvation = -3917.849766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.69060 -41.83403 -40.01327 -37.43331 -36.17518 -34.60129 -34.53817 -33.38101 -31.81872 -30.69973 -27.92551 -27.57432 -26.99399 -26.10725 -25.27892 -23.70056 -22.22064 -21.68568 -20.69155 -19.82218 -19.23754 -18.57377 -17.91304 -17.39403 -17.15830 -16.86420 -16.77056 -16.32916 -16.04188 -15.75005 -15.45702 -15.14840 -14.80907 -14.54719 -14.12329 -14.04827 -13.94777 -13.70430 -13.52975 -13.43848 -13.25084 -13.15074 -12.85791 -12.76632 -12.64907 -12.59744 -12.41811 -12.31566 -12.10920 -12.00107 -11.95060 -11.71050 -11.11459 -11.02771 -10.95428 -10.26355 -10.15617 -10.03286 -8.63971 -8.33019 -6.10479 0.03781 1.09346 1.27989 1.44760 1.47523 1.57419 1.59621 1.72107 2.20556 2.29357 2.36215 2.83484 3.01023 3.05606 3.33384 3.37087 3.63253 3.67920 3.85370 3.97471 4.05927 4.17513 4.20015 4.27012 4.32073 4.33916 4.34875 4.52049 4.54623 4.68605 4.71774 4.75340 4.78606 4.84828 4.86040 4.89788 4.98153 5.00298 5.20429 5.22946 5.43535 5.50461 5.75461 6.21334 6.51846 7.08387 7.08467 7.25052 8.75802 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.001836 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.490779 B =15249.349992 C =15801.851038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.035 4.035 3 C 0.166 3.834 4 N -0.410 5.410 5 O 0.079 5.921 6 C 0.198 3.802 7 C 0.141 3.859 8 H 0.116 0.884 9 C -0.141 4.141 10 N -0.469 5.469 11 C 0.000 4.000 12 C 0.113 3.887 13 N -0.690 5.690 14 C 0.541 3.459 15 O -0.561 6.561 16 C -0.131 4.131 17 S -0.146 6.146 18 C -0.549 4.549 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 0.996 3.004 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.006 4.006 27 N -0.494 5.494 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.417 0.583 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.086 0.914 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.309 -17.605 -3.792 32.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.107 4.107 4 N -0.120 5.120 5 O 0.023 5.977 6 C -0.023 4.023 7 C 0.031 3.969 8 H 0.133 0.867 9 C -0.199 4.199 10 N -0.194 5.194 11 C -0.129 4.129 12 C 0.006 3.994 13 N -0.343 5.343 14 C 0.327 3.673 15 O -0.439 6.439 16 C -0.282 4.282 17 S 0.081 5.919 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.546 5.546 22 Si 0.818 3.182 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.135 4.135 27 N -0.229 5.229 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.127 0.873 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.254 0.746 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.792 -17.716 -4.500 32.433 hybrid contribution 0.079 0.176 1.665 1.676 sum -26.713 -17.541 -2.836 32.082 Atomic orbital electron populations 1.21709 0.92337 1.04102 1.01829 1.20158 0.97541 0.83918 1.05772 1.26525 0.99531 1.01544 0.83075 1.74680 1.18753 0.93583 1.24939 1.85317 1.60277 1.26899 1.25199 1.28994 0.94909 0.96369 0.82025 1.21024 0.94087 0.87362 0.94454 0.86685 1.21836 0.96155 0.97520 1.04385 1.69213 0.99599 1.09718 1.40858 1.24411 0.91695 0.99668 0.97162 1.21952 0.94068 0.93510 0.89857 1.45311 1.25216 1.51837 1.11916 1.19987 0.80254 0.77845 0.89202 1.90689 1.63990 1.61282 1.27908 1.23375 1.01558 1.03353 0.99958 1.85502 1.26499 1.64305 1.15566 1.23185 1.14125 1.37792 0.94546 0.90029 1.26088 0.95426 0.95695 1.01783 1.70167 1.16877 1.37570 1.30031 0.85035 0.77728 0.78421 0.77015 1.18813 1.20352 1.18705 1.24322 0.90397 0.95630 1.03182 1.71904 1.19020 1.02144 1.29830 0.88730 0.93326 0.92582 0.87308 0.88208 0.88647 0.90856 0.91430 0.87025 0.88726 0.87822 0.74583 0.87238 0.87461 0.91995 0.89509 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.90 71.98 0.71 -0.60 16 2 C -0.04 -0.41 6.56 29.85 0.20 -0.21 16 3 C 0.17 3.15 7.47 138.46 1.03 4.18 16 4 N -0.41 -9.25 12.16 -60.33 -0.73 -9.98 16 5 O 0.08 1.70 11.31 74.92 0.85 2.55 16 6 C 0.20 3.44 6.73 88.38 0.59 4.03 16 7 C 0.14 1.66 2.21 44.17 0.10 1.76 16 8 H 0.12 0.98 7.56 -2.39 -0.02 0.96 16 9 C -0.14 -1.31 9.24 71.98 0.66 -0.65 16 10 N -0.47 -6.44 6.12 -906.94 -5.55 -11.99 16 11 C 0.00 0.00 6.96 83.57 0.58 0.58 16 12 C 0.11 2.14 4.59 45.45 0.21 2.35 16 13 N -0.69 -16.46 5.39 -441.71 -2.38 -18.84 16 14 C 0.54 18.99 7.85 87.65 0.69 19.67 16 15 O -0.56 -24.56 15.46 -3.02 -0.05 -24.61 16 16 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 17 S -0.15 -7.99 20.57 -56.49 -1.16 -9.16 16 18 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 19 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.85 5.49 84.86 0.47 1.32 16 21 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 22 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 C -0.01 -0.08 6.91 83.57 0.58 0.49 16 27 N -0.49 -9.36 11.55 -303.22 -3.50 -12.87 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.62 7.85 -2.39 -0.02 0.60 16 34 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 0.95 7.68 -2.39 -0.02 0.93 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.10 2.30 7.46 -2.39 -0.02 2.28 16 39 H 0.42 8.16 8.76 -92.71 -0.81 7.34 16 40 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 41 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.10 1.17 7.79 -2.39 -0.02 1.15 16 Total: -1.00 -77.98 388.98 -3.10 -81.07 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.21 Total: 15.91 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 6.91 Total: -2.32 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -11.88 Total: -109.01 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.80 Total: -22.06 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.16 kcal Total: -77.98 -3.10 -81.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665099496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.040 kcal (2) G-P(sol) polarization free energy of solvation -77.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds