Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47271 * 2 1 4 4 N 1.30268 * 126.28083 * 89.97024 * 3 2 1 5 5 N 1.28677 * 109.37916 * 180.02562 * 4 3 2 6 6 C 1.30273 * 109.37733 * 0.02562 * 5 4 3 7 7 C 1.50701 * 126.27994 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46965 * 90.02733 * 7 6 5 9 9 C 1.47851 * 110.99786 * 290.84433 * 8 7 6 10 10 C 1.54904 * 104.79222 * 213.63429 * 9 8 7 11 11 C 1.55140 * 101.65465 * 37.07123 * 10 9 8 12 12 H 1.08998 * 110.85769 * 82.79609 * 11 10 9 13 13 N 1.46501 * 110.70751 * 205.95983 * 11 10 9 14 14 C 1.34772 * 120.00169 * 268.59765 * 13 11 10 15 15 O 1.21284 * 120.00188 * 0.02562 * 14 13 11 16 16 C 1.50705 * 120.00134 * 179.97438 * 14 13 11 17 17 S 1.80993 * 109.47167 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99974 * 180.02562 * 17 16 14 19 19 H 1.07996 * 120.00014 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00202 * 179.97438 * 18 17 16 21 21 N 1.31637 * 119.99746 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00069 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47091 * 90.00268 * 22 20 18 24 24 H 1.48510 * 109.47022 * 210.00367 * 22 20 18 25 25 H 1.48498 * 109.47377 * 330.00220 * 22 20 18 26 26 C 1.47436 * 110.99898 * 169.99878 * 8 7 6 27 27 O 1.34363 * 126.27689 * 270.25573 * 3 2 1 28 28 H 1.09011 * 109.46776 * 60.00688 * 1 2 3 29 29 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47356 * 300.00465 * 1 2 3 31 31 H 1.08996 * 109.47809 * 239.99569 * 2 1 3 32 32 H 1.09008 * 109.46744 * 119.99837 * 2 1 3 33 33 H 1.08993 * 109.47133 * 330.02771 * 7 6 5 34 34 H 1.08996 * 109.47320 * 210.02511 * 7 6 5 35 35 H 1.08997 * 110.37354 * 332.46432 * 9 8 7 36 36 H 1.08994 * 110.37029 * 94.80655 * 9 8 7 37 37 H 1.08996 * 110.99203 * 278.97760 * 10 9 8 38 38 H 1.09002 * 111.02317 * 155.17502 * 10 9 8 39 39 H 0.97003 * 119.99524 * 88.60129 * 13 11 10 40 40 H 1.09004 * 109.46762 * 300.00752 * 16 14 13 41 41 H 1.08998 * 109.46582 * 60.00026 * 16 14 13 42 42 H 0.97003 * 119.99652 * 179.97438 * 21 20 18 43 43 H 1.08998 * 109.88931 * 242.66034 * 26 8 7 44 44 H 1.09003 * 109.89178 * 3.85625 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2888 2.1478 1.0501 5 7 2.6989 3.3087 0.6760 6 6 2.7175 3.3618 -0.6255 7 6 3.1340 4.5427 -1.4639 8 7 4.5753 4.4653 -1.7371 9 6 5.3610 4.6965 -0.5062 10 6 6.6405 5.4267 -0.9850 11 6 6.0799 6.3363 -2.1098 12 1 5.6568 7.2509 -1.6945 13 7 7.1220 6.6488 -3.0909 14 6 7.8795 7.7533 -2.9408 15 8 7.6988 8.4884 -1.9931 16 6 8.9519 8.0745 -3.9498 17 16 9.7881 9.6076 -3.4741 18 6 10.9552 9.7397 -4.7876 19 1 10.9830 8.9884 -5.5629 20 6 11.8380 10.8100 -4.8265 21 7 11.8038 11.7261 -3.8818 22 14 13.0748 10.9504 -6.2194 23 1 12.4764 11.7245 -7.3365 24 1 14.2928 11.6462 -5.7316 25 1 13.4385 9.5923 -6.6973 26 6 4.9765 5.4640 -2.7448 27 8 2.2928 2.1720 -1.0832 28 1 -0.3633 0.5138 -0.8902 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 2.9152 5.4653 -0.9263 34 1 2.5847 4.5318 -2.4053 35 1 4.8028 5.3247 0.1879 36 1 5.6190 3.7472 -0.0368 37 1 7.3686 4.7191 -1.3815 38 1 7.0749 6.0218 -0.1817 39 1 7.2667 6.0607 -3.8487 40 1 9.6762 7.2606 -3.9816 41 1 8.4997 8.1971 -4.9339 42 1 12.4211 12.4739 -3.9088 43 1 5.3650 4.9615 -3.6306 44 1 4.1215 6.0846 -3.0127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665522681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = -25.078545 kcal Electronic energy + Delta-G solvation = -25829.411782 eV Core-core repulsion = 21908.741469 eV Total energy + Delta-G solvation = -3920.670313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.29750 -41.09675 -39.65486 -37.24661 -36.00346 -35.22025 -34.57606 -33.16455 -31.19064 -30.74091 -29.06259 -27.69028 -27.20166 -25.61031 -23.70171 -22.90444 -22.54925 -22.02208 -21.65540 -19.84940 -18.57291 -18.29798 -17.92010 -17.62890 -17.01558 -16.87164 -16.54440 -16.31212 -16.16318 -15.82482 -15.21760 -15.17929 -14.86808 -14.63728 -14.51525 -14.04480 -13.75110 -13.60518 -13.56036 -13.47677 -13.15953 -13.10868 -12.98509 -12.89416 -12.74725 -12.70607 -12.60591 -12.41875 -12.24530 -11.95659 -11.86758 -11.71925 -11.13558 -10.96602 -10.67270 -10.26370 -10.12499 -9.62842 -8.65721 -8.34112 -6.11970 0.06355 1.16982 1.27836 1.28238 1.43053 1.47803 1.57939 1.60302 2.21201 2.28724 2.67308 2.88480 3.00326 3.32402 3.35204 3.47981 3.57980 3.80720 3.96851 3.98829 4.12534 4.13187 4.20012 4.24193 4.26613 4.31228 4.32734 4.36276 4.53235 4.54695 4.58483 4.77100 4.79182 4.85356 4.92091 4.94553 4.99584 5.03068 5.26444 5.42703 5.49433 5.60978 5.69076 6.20473 6.50488 7.07506 7.21328 7.24891 8.75049 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.047847 B = 0.001557 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.058123 B =17984.297272 C =18218.535117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C 0.173 3.827 4 N -0.327 5.327 5 N -0.314 5.314 6 C 0.177 3.823 7 C 0.140 3.860 8 N -0.526 5.526 9 C 0.052 3.948 10 C -0.137 4.137 11 C 0.125 3.875 12 H 0.081 0.919 13 N -0.701 5.701 14 C 0.537 3.463 15 O -0.565 6.565 16 C -0.130 4.130 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.258 1.258 26 C 0.051 3.949 27 O -0.222 6.222 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.052 0.948 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.419 0.581 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.271 0.729 43 H 0.110 0.890 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.377 -26.320 0.514 35.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.066 4.066 3 C -0.039 4.039 4 N -0.173 5.173 5 N -0.161 5.161 6 C -0.036 4.036 7 C 0.011 3.989 8 N -0.252 5.252 9 C -0.076 4.076 10 C -0.177 4.177 11 C 0.018 3.982 12 H 0.099 0.901 13 N -0.355 5.355 14 C 0.323 3.677 15 O -0.442 6.442 16 C -0.281 4.281 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.182 1.182 26 C -0.077 4.077 27 O -0.100 6.100 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.257 0.743 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.416 -25.102 3.200 34.477 hybrid contribution 0.971 -0.020 -2.363 2.555 sum -22.445 -25.122 0.836 33.698 Atomic orbital electron populations 1.21798 0.91711 1.04766 1.02289 1.20518 0.97727 0.80857 1.07495 1.28979 0.97149 0.98851 0.78913 1.74339 1.16993 0.98909 1.27082 1.74347 1.17492 1.13713 1.10526 1.28167 0.96931 0.87384 0.91079 1.20953 0.90152 0.88208 0.99579 1.63576 1.02536 1.49369 1.09677 1.22940 0.93409 0.99781 0.91437 1.23066 0.97783 0.98351 0.98479 1.22173 0.88409 0.98226 0.89363 0.90073 1.45634 1.35529 1.25313 1.29057 1.20064 0.81683 0.80644 0.85320 1.90701 1.69579 1.50511 1.33452 1.23374 0.99722 1.03046 1.01939 1.85593 1.42328 1.27093 1.37567 1.23215 1.21194 1.13383 1.11627 0.89834 1.26115 0.99278 0.94139 0.99551 1.70189 1.37812 1.12323 1.34503 0.84962 0.76795 0.79006 0.77274 1.19271 1.20424 1.18177 1.23049 0.97561 0.91858 0.95208 1.84808 1.63591 1.23235 1.38411 0.92338 0.87981 0.92929 0.86131 0.85918 0.88362 0.84195 0.92489 0.91055 0.89795 0.91770 0.74291 0.87249 0.86905 0.92034 0.87187 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 71.98 0.71 0.00 16 2 C -0.03 -0.18 6.56 29.85 0.20 0.01 16 3 C 0.17 2.87 7.73 88.34 0.68 3.55 16 4 N -0.33 -7.62 12.22 -165.50 -2.02 -9.65 16 5 N -0.31 -7.56 12.22 -165.50 -2.02 -9.58 16 6 C 0.18 3.28 7.46 88.34 0.66 3.94 16 7 C 0.14 1.71 5.20 85.56 0.44 2.15 16 8 N -0.53 -7.63 5.15 -890.10 -4.59 -12.22 16 9 C 0.05 0.96 6.17 86.77 0.54 1.50 16 10 C -0.14 -2.86 6.76 31.98 0.22 -2.65 16 11 C 0.12 2.49 3.31 46.17 0.15 2.64 16 12 H 0.08 2.01 7.55 -2.39 -0.02 1.99 16 13 N -0.70 -15.72 5.18 -436.94 -2.26 -17.98 16 14 C 0.54 18.69 7.85 87.66 0.69 19.38 16 15 O -0.56 -25.27 15.51 -3.04 -0.05 -25.31 16 16 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 17 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 18 C -0.55 -30.84 9.50 67.95 0.65 -30.20 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 22 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 C 0.05 0.61 6.62 86.65 0.57 1.19 16 27 O -0.22 -3.90 10.87 -3.68 -0.04 -3.94 16 28 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 29 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 1.09 7.85 -2.39 -0.02 1.07 16 34 H 0.14 0.88 8.03 -2.39 -0.02 0.86 16 35 H 0.06 1.11 7.62 -2.39 -0.02 1.09 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.42 6.35 8.37 -92.71 -0.78 5.57 16 40 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 41 H 0.11 3.77 8.14 -2.40 -0.02 3.76 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.11 1.01 7.72 -2.39 -0.02 0.99 16 44 H 0.09 0.79 7.55 -2.39 -0.02 0.77 16 Total: -1.00 -83.29 386.73 -3.17 -86.46 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.25 Total: 13.75 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 6.41 Total: -1.70 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -10.61 Total: -104.94 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.09 Total: -29.25 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -83.29 -3.17 -86.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665522681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.383 kcal (2) G-P(sol) polarization free energy of solvation -83.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds