Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21618 * 119.99938 * 359.97438 * 7 6 5 9 9 C 1.47336 * 120.00284 * 180.02562 * 7 6 5 10 10 C 1.37902 * 123.08676 * 0.02562 * 9 7 6 11 11 S 1.72016 * 105.36513 * 179.97438 * 10 9 7 12 12 N 1.69475 * 96.02793 * 359.97438 * 11 10 9 13 13 C 1.29522 * 107.84515 * 359.72633 * 12 11 10 14 14 C 1.50702 * 121.53254 * 180.23541 * 13 12 11 15 15 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 16 16 C 1.46901 * 110.99814 * 300.92314 * 15 3 2 17 17 C 1.50692 * 109.47239 * 185.67747 * 16 15 3 18 18 O 1.21297 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00418 * 179.72333 * 17 16 15 20 20 C 1.37095 * 120.00548 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99701 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47062 * 90.00572 * 24 22 20 26 26 H 1.48498 * 109.47263 * 210.00397 * 24 22 20 27 27 H 1.48498 * 109.47134 * 330.00733 * 24 22 20 28 28 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 29 29 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 30 30 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 31 31 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 32 32 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 33 33 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 34 34 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 35 35 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 36 36 H 1.08001 * 127.31799 * 359.96015 * 10 9 7 37 37 H 1.09000 * 109.46819 * 270.26921 * 14 13 12 38 38 H 1.09000 * 109.47189 * 30.26625 * 14 13 12 39 39 H 1.08995 * 109.46990 * 150.26857 * 14 13 12 40 40 H 1.00897 * 110.99887 * 64.87330 * 15 3 2 41 41 H 1.09003 * 109.46892 * 65.67283 * 16 15 3 42 42 H 1.09004 * 109.47007 * 305.68019 * 16 15 3 43 43 H 0.97007 * 119.99235 * 0.02562 * 19 17 16 44 44 H 0.97002 * 119.99685 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1640 2.1462 0.2830 9 6 5.8871 4.4431 -0.0161 10 6 5.0619 5.5293 -0.2181 11 16 6.1101 6.8915 -0.2869 12 7 7.5466 6.0225 -0.0557 13 6 7.2374 4.7711 0.0716 14 6 8.2913 3.7179 0.2977 15 7 1.6596 2.0963 -1.2593 16 6 2.2180 1.3802 -2.4140 17 6 1.9261 2.1536 -3.6739 18 8 1.3135 3.1989 -3.6157 19 7 2.3508 1.6871 -4.8648 20 6 2.0848 2.3904 -6.0111 21 1 1.5351 3.3186 -5.9598 22 6 2.5232 1.9096 -7.2389 23 7 3.1925 0.7804 -7.3012 24 14 2.1613 2.8683 -8.8006 25 1 3.2664 3.8255 -9.0611 26 1 2.0423 1.9270 -9.9430 27 1 0.8877 3.6146 -8.6394 28 1 -0.3633 0.4961 0.8999 29 1 -0.3632 0.5314 -0.8797 30 1 -0.3633 -1.0274 -0.0205 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8428 1.0402 1.1087 34 1 3.9997 0.8294 -0.6518 35 1 3.4419 3.5480 -0.1267 36 1 3.9861 5.5256 -0.3132 37 1 8.6408 3.3414 -0.6637 38 1 9.1286 4.1530 0.8435 39 1 7.8670 2.8978 0.8766 40 1 0.6569 2.1788 -1.3353 41 1 1.7652 0.3910 -2.4816 42 1 3.2964 1.2785 -2.2916 43 1 2.8442 0.8531 -4.9109 44 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665776114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = -34.908218 kcal Electronic energy + Delta-G solvation = -27351.577315 eV Core-core repulsion = 23430.480755 eV Total energy + Delta-G solvation = -3921.096560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43161 -38.98668 -38.07593 -37.21446 -34.35206 -33.92895 -31.87266 -31.82135 -31.19290 -29.60891 -28.66942 -26.65296 -24.78276 -24.23613 -23.33605 -21.07307 -20.53388 -19.52887 -19.16271 -18.36144 -17.91671 -17.02450 -16.87710 -15.70917 -15.64080 -15.41360 -14.97446 -14.70639 -14.45454 -14.24075 -14.21030 -13.89905 -13.86247 -13.51877 -13.41881 -13.16907 -12.67784 -12.46080 -12.36785 -12.33944 -11.97812 -11.82227 -11.53221 -11.46529 -11.40245 -11.10323 -10.90662 -10.87094 -10.82404 -10.41653 -10.24093 -9.90619 -9.77509 -9.52962 -9.11912 -8.77287 -8.56174 -8.13806 -7.98607 -6.43793 -3.84828 0.29334 1.21842 1.61079 1.74430 3.09811 3.16040 3.23480 3.25006 3.30132 3.87707 4.05867 4.29000 4.34325 4.54756 4.73993 4.81507 4.90688 4.93552 5.11922 5.18165 5.20628 5.23930 5.30147 5.37035 5.52070 5.53593 5.58772 5.65672 5.69708 5.76511 5.82836 5.93125 6.02728 6.08815 6.14538 6.23088 6.42192 6.54597 7.07387 7.48864 7.52688 7.52930 8.03472 8.18053 8.58428 9.15507 9.51930 10.02889 10.73829 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007802 B = 0.003563 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.802251 B = 7856.201897 C =10128.396950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.705 5.705 7 C 0.585 3.415 8 O -0.538 6.538 9 C -0.212 4.212 10 C -0.165 4.165 11 S 0.289 5.711 12 N -0.474 5.474 13 C 0.166 3.834 14 C -0.095 4.095 15 N -0.660 5.660 16 C 0.043 3.957 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.194 0.806 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.353 0.647 41 H 0.048 0.952 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 2.267 18.298 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.356 5.356 7 C 0.369 3.631 8 O -0.417 6.417 9 C -0.233 4.233 10 C -0.314 4.314 11 S 0.445 5.555 12 N -0.295 5.295 13 C -0.012 4.012 14 C -0.156 4.156 15 N -0.292 5.292 16 C -0.089 4.089 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.211 0.789 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.173 0.827 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.294 4.774 18.125 19.031 hybrid contribution -1.442 -2.280 -1.038 2.890 sum 1.852 2.494 17.088 17.368 Atomic orbital electron populations 1.21756 0.95241 1.02023 1.02006 1.22207 0.96790 0.97858 1.03147 1.21933 0.94228 0.93706 0.93970 0.89196 1.21449 0.92977 0.83246 1.02022 1.45632 1.06785 1.10466 1.72705 1.17266 0.82413 0.86785 0.76634 1.90709 1.55491 1.45329 1.50162 1.20384 0.93130 0.95629 1.14202 1.27520 1.06206 0.98193 0.99530 1.84068 0.93707 1.13774 1.63976 1.76472 1.19282 1.07945 1.25807 1.21452 0.93836 0.92299 0.93576 1.20918 0.95046 0.95541 1.04127 1.60216 1.18127 1.51258 0.99622 1.21769 1.00944 0.95489 0.90731 1.19783 0.85361 0.87899 0.84310 1.90512 1.45163 1.24768 1.86446 1.41868 1.49548 1.23289 1.05221 1.19680 1.33647 1.06212 0.83441 0.87964 1.25258 0.96688 0.96439 0.99473 1.69612 1.37615 1.20025 1.26900 0.85874 0.79023 0.78970 0.80527 1.20383 1.20911 1.19422 0.92565 0.92441 0.92469 0.90972 0.91261 0.90983 0.91049 0.75419 0.78873 0.89728 0.91007 0.87136 0.82668 0.93403 0.89508 0.77534 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.71 37.16 0.36 -0.98 16 2 C -0.16 -1.44 5.17 -26.73 -0.14 -1.58 16 3 C 0.07 0.71 2.70 -67.71 -0.18 0.53 16 4 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 5 C 0.13 1.39 4.70 -4.05 -0.02 1.37 16 6 N -0.70 -8.28 5.36 -61.42 -0.33 -8.61 16 7 C 0.58 7.94 7.78 -12.56 -0.10 7.85 16 8 O -0.54 -8.40 13.75 5.26 0.07 -8.33 16 9 C -0.21 -2.71 5.86 -105.95 -0.62 -3.33 16 10 C -0.16 -1.76 10.79 30.61 0.33 -1.43 16 11 S 0.29 3.13 23.69 -107.50 -2.55 0.58 16 12 N -0.47 -6.35 11.97 32.50 0.39 -5.96 16 13 C 0.17 2.19 6.75 -83.19 -0.56 1.63 16 14 C -0.10 -1.11 9.51 36.01 0.34 -0.77 16 15 N -0.66 -8.74 5.36 -107.99 -0.58 -9.32 16 16 C 0.04 0.70 5.34 -4.98 -0.03 0.67 16 17 C 0.44 9.91 7.83 -10.99 -0.09 9.82 16 18 O -0.58 -14.97 15.90 5.54 0.09 -14.88 16 19 N -0.56 -13.98 5.29 -10.97 -0.06 -14.04 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.58 6.85 -51.93 -0.36 0.22 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.73 6.23 -51.93 -0.32 0.41 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.90 6.57 -51.92 -0.34 0.55 16 35 H 0.41 4.47 6.72 -40.82 -0.27 4.20 16 36 H 0.19 1.60 7.20 -52.49 -0.38 1.23 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.36 5.63 -51.93 -0.29 1.07 16 40 H 0.35 4.83 7.23 -39.29 -0.28 4.55 16 41 H 0.05 0.71 6.49 -51.93 -0.34 0.37 16 42 H 0.09 1.39 6.15 -51.93 -0.32 1.07 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -32.18 375.99 -8.23 -40.41 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -5.70 Total: 16.36 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.94 Total: 5.90 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.15 Total: -61.62 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.21 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -2.55 Total: 0.58 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.18 -8.23 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665776114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.503 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds