Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21618 * 119.99938 * 359.97438 * 7 6 5 9 9 C 1.47336 * 120.00284 * 180.02562 * 7 6 5 10 10 C 1.37902 * 123.08676 * 0.02562 * 9 7 6 11 11 S 1.72016 * 105.36513 * 179.97438 * 10 9 7 12 12 N 1.69475 * 96.02793 * 359.97438 * 11 10 9 13 13 C 1.29522 * 107.84515 * 359.72633 * 12 11 10 14 14 C 1.50702 * 121.53254 * 180.23541 * 13 12 11 15 15 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 16 16 C 1.46901 * 110.99814 * 300.92314 * 15 3 2 17 17 C 1.50692 * 109.47239 * 185.67747 * 16 15 3 18 18 O 1.21297 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00418 * 179.72333 * 17 16 15 20 20 C 1.37095 * 120.00548 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99701 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47062 * 90.00572 * 24 22 20 26 26 H 1.48498 * 109.47263 * 210.00397 * 24 22 20 27 27 H 1.48498 * 109.47134 * 330.00733 * 24 22 20 28 28 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 29 29 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 30 30 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 31 31 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 32 32 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 33 33 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 34 34 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 35 35 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 36 36 H 1.08001 * 127.31799 * 359.96015 * 10 9 7 37 37 H 1.09000 * 109.46819 * 270.26921 * 14 13 12 38 38 H 1.09000 * 109.47189 * 30.26625 * 14 13 12 39 39 H 1.08995 * 109.46990 * 150.26857 * 14 13 12 40 40 H 1.00897 * 110.99887 * 64.87330 * 15 3 2 41 41 H 1.09003 * 109.46892 * 65.67283 * 16 15 3 42 42 H 1.09004 * 109.47007 * 305.68019 * 16 15 3 43 43 H 0.97007 * 119.99235 * 0.02562 * 19 17 16 44 44 H 0.97002 * 119.99685 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1640 2.1462 0.2830 9 6 5.8871 4.4431 -0.0161 10 6 5.0619 5.5293 -0.2181 11 16 6.1101 6.8915 -0.2869 12 7 7.5466 6.0225 -0.0557 13 6 7.2374 4.7711 0.0716 14 6 8.2913 3.7179 0.2977 15 7 1.6596 2.0963 -1.2593 16 6 2.2180 1.3802 -2.4140 17 6 1.9261 2.1536 -3.6739 18 8 1.3135 3.1989 -3.6157 19 7 2.3508 1.6871 -4.8648 20 6 2.0848 2.3904 -6.0111 21 1 1.5351 3.3186 -5.9598 22 6 2.5232 1.9096 -7.2389 23 7 3.1925 0.7804 -7.3012 24 14 2.1613 2.8683 -8.8006 25 1 3.2664 3.8255 -9.0611 26 1 2.0423 1.9270 -9.9430 27 1 0.8877 3.6146 -8.6394 28 1 -0.3633 0.4961 0.8999 29 1 -0.3632 0.5314 -0.8797 30 1 -0.3633 -1.0274 -0.0205 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8428 1.0402 1.1087 34 1 3.9997 0.8294 -0.6518 35 1 3.4419 3.5480 -0.1267 36 1 3.9861 5.5256 -0.3132 37 1 8.6408 3.3414 -0.6637 38 1 9.1286 4.1530 0.8435 39 1 7.8670 2.8978 0.8766 40 1 0.6569 2.1788 -1.3353 41 1 1.7652 0.3910 -2.4816 42 1 3.2964 1.2785 -2.2916 43 1 2.8442 0.8531 -4.9109 44 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665776114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = -59.382984 kcal Electronic energy + Delta-G solvation = -27352.638620 eV Core-core repulsion = 23430.480755 eV Total energy + Delta-G solvation = -3922.157865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41896 -40.34386 -39.32554 -38.41602 -35.94614 -35.29759 -33.29768 -32.78545 -32.74147 -30.54822 -29.65334 -28.09921 -26.13044 -25.55254 -24.16182 -22.03275 -21.72643 -20.82630 -20.30444 -19.88045 -19.24794 -18.29923 -17.98344 -17.10152 -16.64547 -16.50598 -16.44772 -15.88899 -15.86608 -15.60400 -15.26762 -15.13857 -14.95573 -14.70575 -14.40843 -14.21320 -14.01858 -13.54926 -13.52354 -13.38017 -13.26165 -13.13200 -12.89691 -12.70450 -12.40825 -12.37351 -12.25624 -12.12921 -11.81658 -11.77439 -11.64562 -11.48525 -10.87053 -10.78959 -10.32266 -10.08585 -9.99864 -9.67139 -9.32266 -8.45918 -5.94327 -0.61531 0.33542 0.68821 0.74966 1.37547 1.41289 1.53611 2.07777 2.13501 2.24421 2.29275 2.96298 3.21910 3.46783 3.55586 3.74679 3.88406 3.91986 4.07696 4.19433 4.30381 4.31431 4.38808 4.41682 4.49895 4.55830 4.60270 4.66167 4.71596 4.80662 4.83072 4.96324 5.14594 5.16514 5.28647 5.40750 5.41411 5.47551 5.60683 5.89294 6.09852 6.42500 6.55466 6.60723 7.13865 7.19530 7.58431 8.12966 8.71567 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007802 B = 0.003563 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.802251 B = 7856.201897 C =10128.396950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.115 0.885 5 C 0.126 3.874 6 N -0.698 5.698 7 C 0.581 3.419 8 O -0.564 6.564 9 C -0.235 4.235 10 C -0.153 4.153 11 S 0.323 5.677 12 N -0.504 5.504 13 C 0.154 3.846 14 C -0.091 4.091 15 N -0.664 5.664 16 C 0.063 3.937 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.577 5.577 20 C -0.330 4.330 21 H 0.081 0.919 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.990 3.010 25 H -0.274 1.274 26 H -0.272 1.272 27 H -0.270 1.270 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.218 0.782 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.352 0.648 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.393 0.607 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 2.448 19.173 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.196 4.196 3 C -0.027 4.027 4 H 0.132 0.868 5 C 0.002 3.998 6 N -0.349 5.349 7 C 0.366 3.634 8 O -0.446 6.446 9 C -0.256 4.256 10 C -0.303 4.303 11 S 0.479 5.521 12 N -0.325 5.325 13 C -0.022 4.022 14 C -0.152 4.152 15 N -0.297 5.297 16 C -0.070 4.070 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.099 0.901 22 C -0.213 4.213 23 N -0.564 5.564 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.195 1.195 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.173 0.827 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.226 0.774 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.468 4.939 19.024 19.809 hybrid contribution -1.238 -2.273 -1.224 2.863 sum 1.231 2.667 17.799 18.040 Atomic orbital electron populations 1.21746 0.94896 1.02273 1.01954 1.22167 0.96960 0.96965 1.03497 1.21981 0.93480 0.94546 0.92709 0.86759 1.21534 0.93477 0.82584 1.02215 1.45621 1.06295 1.11017 1.71927 1.17427 0.82746 0.86873 0.76338 1.90692 1.56185 1.46124 1.51593 1.20398 0.93379 0.95823 1.16037 1.27856 1.07294 0.97595 0.97542 1.83926 0.92511 1.12783 1.62897 1.76355 1.21194 1.08257 1.26730 1.21642 0.94416 0.92520 0.93658 1.20873 0.95247 0.95203 1.03920 1.60177 1.18021 1.51652 0.99829 1.21516 1.01461 0.95303 0.88707 1.20863 0.83316 0.87544 0.85423 1.90482 1.46136 1.26379 1.87217 1.41968 1.50438 1.23445 1.05574 1.19657 1.34860 1.06321 0.85156 0.90106 1.26017 0.96161 0.97257 1.01906 1.69680 1.37977 1.20899 1.27803 0.84964 0.78724 0.77859 0.77047 1.19918 1.19719 1.19452 0.91122 0.94033 0.92065 0.92254 0.89323 0.89529 0.92738 0.74872 0.76509 0.90116 0.89755 0.87875 0.82711 0.91649 0.89081 0.77353 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.71 71.98 0.70 -1.57 16 2 C -0.16 -2.40 5.17 30.60 0.16 -2.24 16 3 C 0.08 1.41 2.70 44.91 0.12 1.53 16 4 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 5 C 0.13 2.51 4.70 86.38 0.41 2.91 16 6 N -0.70 -15.36 5.36 -466.47 -2.50 -17.86 16 7 C 0.58 15.43 7.78 86.64 0.67 16.11 16 8 O -0.56 -17.62 13.75 -4.09 -0.06 -17.68 16 9 C -0.24 -5.85 5.86 -20.72 -0.12 -5.97 16 10 C -0.15 -3.05 10.79 67.74 0.73 -2.31 16 11 S 0.32 6.56 23.69 -56.49 -1.34 5.22 16 12 N -0.50 -13.23 11.97 -51.09 -0.61 -13.84 16 13 C 0.15 4.05 6.75 43.14 0.29 4.34 16 14 C -0.09 -2.16 9.51 71.24 0.68 -1.49 16 15 N -0.66 -16.44 5.36 -495.58 -2.65 -19.10 16 16 C 0.06 1.96 5.34 85.55 0.46 2.42 16 17 C 0.44 19.87 7.83 87.65 0.69 20.55 16 18 O -0.62 -31.75 15.90 -3.08 -0.05 -31.79 16 19 N -0.58 -29.08 5.29 -306.99 -1.62 -30.70 16 20 C -0.33 -18.49 9.68 84.04 0.81 -17.68 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 24 Si 0.99 42.80 29.55 68.60 2.03 44.82 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.76 6.85 -2.38 -0.02 0.74 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.08 6.23 -2.39 -0.01 1.07 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.30 6.57 -2.38 -0.02 1.28 16 35 H 0.41 8.22 6.72 -92.70 -0.62 7.60 16 36 H 0.22 3.08 7.20 -2.91 -0.02 3.06 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.60 5.63 -2.39 -0.01 2.59 16 40 H 0.35 9.07 7.23 -89.70 -0.65 8.42 16 41 H 0.07 1.85 6.49 -2.39 -0.02 1.84 16 42 H 0.09 2.84 6.15 -2.38 -0.01 2.83 16 43 H 0.39 19.22 7.90 -92.70 -0.73 18.49 16 44 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -69.86 375.99 -1.38 -71.24 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.92 Total: 43.11 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 6.06 Total: 16.33 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -7.10 Total: -131.26 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.11 Total: -49.47 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -1.34 Total: 5.22 kcal Total: -69.86 -1.38 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665776114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.861 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds