Wall clock time and date at job start Sat Apr 11 2020 06:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46878 * 2 1 4 4 H 1.09000 * 109.46980 * 302.96407 * 3 2 1 5 5 C 1.53001 * 109.47168 * 182.96474 * 3 2 1 6 6 N 1.46493 * 109.47252 * 185.00019 * 5 3 2 7 7 C 1.34769 * 120.00111 * 180.02562 * 6 5 3 8 8 O 1.21619 * 120.00191 * 0.02562 * 7 6 5 9 9 C 1.47345 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.37893 * 123.08851 * 0.02562 * 9 7 6 11 11 S 1.72013 * 105.36817 * 179.97438 * 10 9 7 12 12 N 1.69487 * 96.02471 * 0.02562 * 11 10 9 13 13 C 1.29506 * 107.84505 * 359.72038 * 12 11 10 14 14 C 1.50699 * 121.53663 * 180.23516 * 13 12 11 15 15 N 1.46898 * 109.47026 * 62.96609 * 3 2 1 16 16 C 1.46896 * 111.00608 * 65.52066 * 15 3 2 17 17 C 1.50696 * 109.47732 * 182.18146 * 16 15 3 18 18 O 1.21295 * 119.99619 * 0.02562 * 17 16 15 19 19 N 1.34766 * 120.00393 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00499 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99853 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00193 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00408 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99728 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47186 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47051 * 119.99838 * 24 22 20 27 27 H 1.48495 * 109.46961 * 240.00035 * 24 22 20 28 28 H 1.08997 * 109.47537 * 54.78271 * 1 2 3 29 29 H 1.09005 * 109.46808 * 174.77741 * 1 2 3 30 30 H 1.08995 * 109.47498 * 294.77883 * 1 2 3 31 31 H 1.08992 * 109.47575 * 239.99928 * 2 1 3 32 32 H 1.09005 * 109.47213 * 119.99350 * 2 1 3 33 33 H 1.09007 * 109.46713 * 304.99931 * 5 3 2 34 34 H 1.09000 * 109.46935 * 64.99491 * 5 3 2 35 35 H 0.97008 * 119.99762 * 359.97438 * 6 5 3 36 36 H 1.08003 * 127.31758 * 359.97245 * 10 9 7 37 37 H 1.08999 * 109.47087 * 270.27367 * 14 13 12 38 38 H 1.09001 * 109.46976 * 30.26897 * 14 13 12 39 39 H 1.08997 * 109.47531 * 150.27386 * 14 13 12 40 40 H 1.00903 * 111.00109 * 189.47810 * 15 3 2 41 41 H 1.09007 * 109.46819 * 302.18514 * 16 15 3 42 42 H 1.09000 * 109.47087 * 62.18032 * 16 15 3 43 43 H 0.97001 * 119.99890 * 0.02562 * 19 17 16 44 44 H 0.96994 * 120.00176 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6338 1.9715 -0.8622 5 6 3.5681 1.4433 -0.0746 6 7 4.0623 2.8171 0.0455 7 6 5.3868 3.0627 0.0061 8 8 6.1719 2.1439 -0.1298 9 6 5.8838 4.4446 0.1263 10 6 5.0515 5.5331 0.2818 11 16 6.0964 6.8964 0.3736 12 7 7.5408 6.0249 0.2101 13 6 7.2372 4.7708 0.0990 14 6 8.2996 3.7136 -0.0582 15 7 1.6096 2.1140 1.2336 16 6 2.2438 1.5078 2.4118 17 6 1.7386 2.1859 3.6592 18 8 0.9293 3.0855 3.5750 19 7 2.1851 1.7922 4.8682 20 6 1.7258 2.4094 6.0030 21 1 1.0059 3.2110 5.9280 22 6 2.1866 2.0038 7.2495 23 7 3.0629 1.0289 7.3408 24 14 1.5603 2.8445 8.7957 25 1 0.5877 3.9033 8.4240 26 1 0.8943 1.8440 9.6679 27 1 2.7013 3.4548 9.5241 28 1 -0.3634 0.5926 -0.8395 29 1 -0.3633 -1.0235 -0.0935 30 1 -0.3634 0.4307 0.9330 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9718 0.8396 0.7383 34 1 3.8854 1.0252 -1.0299 35 1 3.4360 3.5502 0.1527 36 1 3.9728 5.5302 0.3346 37 1 8.5100 3.5645 -1.1172 38 1 9.2086 4.0334 0.4513 39 1 7.9486 2.7782 0.3777 40 1 1.7981 3.1044 1.1910 41 1 1.9987 0.4464 2.4506 42 1 3.3250 1.6287 2.3451 43 1 2.8319 1.0725 4.9356 44 1 3.3843 0.7455 8.2110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665776115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:02 Heat of formation + Delta-G solvation = -32.728992 kcal Electronic energy + Delta-G solvation = -27376.893519 eV Core-core repulsion = 23455.891457 eV Total energy + Delta-G solvation = -3921.002061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.64418 -39.05652 -38.15961 -37.21285 -34.37857 -33.94681 -32.06009 -31.90239 -31.21670 -29.72496 -28.60638 -26.62194 -24.89706 -24.26996 -23.33012 -21.25688 -20.48396 -19.67198 -19.16553 -18.62533 -17.95114 -17.27259 -16.86568 -15.84797 -15.75168 -15.45844 -14.98705 -14.81090 -14.41079 -14.35854 -14.10756 -13.99244 -13.77250 -13.55342 -13.48007 -13.21153 -12.75120 -12.56867 -12.50710 -12.20740 -11.95704 -11.71666 -11.58506 -11.50461 -11.33222 -11.07828 -10.96952 -10.90930 -10.63431 -10.36793 -10.25090 -10.06084 -9.93586 -9.54699 -9.36237 -8.92627 -8.54992 -8.15352 -7.99235 -6.44280 -3.85402 0.13706 1.07740 1.48055 1.60037 2.86384 3.03932 3.14218 3.25137 3.31760 3.86768 4.04267 4.17349 4.27066 4.51458 4.63780 4.65357 4.82380 5.00329 5.05817 5.14631 5.19117 5.22948 5.30603 5.45214 5.46743 5.53395 5.54261 5.70703 5.75764 5.85111 5.93610 5.98507 6.04353 6.17638 6.21762 6.26249 6.41041 6.50777 7.06572 7.18080 7.46822 7.52601 7.94798 8.03113 8.57655 9.15007 9.51257 10.02007 10.73356 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007958 B = 0.003506 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.636813 B = 7983.791172 C =10176.888363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.089 0.911 5 C 0.081 3.919 6 N -0.721 5.721 7 C 0.588 3.412 8 O -0.527 6.527 9 C -0.213 4.213 10 C -0.171 4.171 11 S 0.298 5.702 12 N -0.472 5.472 13 C 0.166 3.834 14 C -0.096 4.096 15 N -0.652 5.652 16 C 0.043 3.957 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.192 0.808 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.343 0.657 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.555 3.356 -18.127 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.107 0.893 5 C -0.045 4.045 6 N -0.373 5.373 7 C 0.373 3.627 8 O -0.405 6.405 9 C -0.235 4.235 10 C -0.321 4.321 11 S 0.454 5.546 12 N -0.293 5.293 13 C -0.011 4.011 14 C -0.157 4.157 15 N -0.283 5.283 16 C -0.089 4.089 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.232 0.768 36 H 0.209 0.791 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.162 0.838 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.909 4.945 -17.860 19.171 hybrid contribution 0.059 -1.064 0.793 1.328 sum 4.967 3.881 -17.067 18.193 Atomic orbital electron populations 1.21616 0.94566 1.00621 1.03094 1.21500 0.97385 0.94162 1.02069 1.22006 0.90209 0.97388 0.93909 0.89281 1.22259 0.96610 0.82545 1.03058 1.45785 1.06740 1.10096 1.74661 1.17244 0.82230 0.86913 0.76306 1.90730 1.54894 1.45345 1.49548 1.20378 0.93107 0.95377 1.14629 1.27483 1.06082 0.98506 1.00007 1.84120 0.93241 1.13377 1.63844 1.76484 1.19180 1.07722 1.25881 1.21447 0.93846 0.92311 0.93479 1.20928 0.94854 0.96217 1.03708 1.60206 1.60916 1.07256 0.99969 1.21786 0.96579 1.00102 0.90468 1.19781 0.86227 0.87117 0.84317 1.90518 1.36776 1.33111 1.86518 1.41870 1.39698 1.33640 1.04657 1.19735 1.23495 1.16613 0.83110 0.87886 1.25262 0.96527 0.96687 0.99387 1.69615 1.30690 1.27944 1.25856 0.85820 0.78607 0.79104 0.80936 1.19214 1.20693 1.20765 0.93205 0.93503 0.91013 0.91740 0.91400 0.90475 0.90787 0.76766 0.79099 0.89864 0.90745 0.87061 0.83774 0.89233 0.93508 0.77515 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.71 37.16 0.36 -1.14 16 2 C -0.11 -1.11 5.29 -26.73 -0.14 -1.25 16 3 C 0.08 0.76 2.73 -67.71 -0.18 0.58 16 4 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.08 0.83 4.47 -4.05 -0.02 0.81 16 6 N -0.72 -7.48 5.28 -61.41 -0.32 -7.81 16 7 C 0.59 7.34 7.78 -12.56 -0.10 7.24 16 8 O -0.53 -7.80 13.75 5.26 0.07 -7.73 16 9 C -0.21 -2.47 5.86 -105.94 -0.62 -3.09 16 10 C -0.17 -1.60 10.79 30.61 0.33 -1.27 16 11 S 0.30 2.92 23.69 -107.50 -2.55 0.37 16 12 N -0.47 -5.90 11.97 32.50 0.39 -5.51 16 13 C 0.17 2.05 6.75 -83.20 -0.56 1.49 16 14 C -0.10 -1.05 9.51 36.01 0.34 -0.71 16 15 N -0.65 -8.81 5.37 -107.99 -0.58 -9.39 16 16 C 0.04 0.70 5.32 -4.98 -0.03 0.67 16 17 C 0.44 9.91 7.82 -10.99 -0.09 9.82 16 18 O -0.58 -15.05 15.83 5.54 0.09 -14.96 16 19 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 33 H 0.08 0.93 6.69 -51.93 -0.35 0.58 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.40 3.45 5.81 -40.82 -0.24 3.21 16 36 H 0.19 1.21 7.20 -52.48 -0.38 0.84 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 1.37 5.63 -51.93 -0.29 1.08 16 40 H 0.34 4.59 7.24 -39.29 -0.28 4.30 16 41 H 0.09 1.38 6.30 -51.92 -0.33 1.05 16 42 H 0.05 0.73 6.41 -51.93 -0.33 0.40 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -32.61 376.16 -8.26 -40.88 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -5.73 Total: 15.01 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.94 Total: 5.28 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.15 Total: -60.36 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: 0.16 Total: -22.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.55 Total: 0.37 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.61 -8.26 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665776115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.147 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds