Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29951 * 126.28850 * 2 1 4 4 O 1.21300 * 110.25010 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.81196 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.55380 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47196 * 269.95915 * 6 5 4 8 8 C 1.46899 * 111.00172 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.88295 * 322.56220 * 8 7 6 10 10 C 1.55157 * 111.00091 * 198.64792 * 8 7 6 11 11 C 1.54327 * 102.94217 * 206.41785 * 10 8 7 12 12 H 1.09000 * 109.88550 * 141.60805 * 11 10 8 13 13 C 1.53005 * 110.01314 * 262.70598 * 11 10 8 14 14 N 1.47028 * 107.26942 * 22.19268 * 11 10 8 15 15 C 1.34774 * 125.64776 * 181.09732 * 14 11 10 16 16 O 1.21276 * 120.00310 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99672 * 179.97438 * 15 14 11 18 18 S 1.81002 * 109.46838 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99836 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00497 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00085 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00067 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47154 * 89.99687 * 23 21 19 25 25 H 1.48504 * 109.47036 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.46864 * 329.99653 * 23 21 19 27 27 C 1.47428 * 108.69939 * 1.05903 * 14 11 10 28 28 N 1.31134 * 106.89855 * 359.97438 * 5 4 3 29 29 H 1.08994 * 109.47484 * 270.00619 * 1 2 3 30 30 H 1.09006 * 109.46887 * 30.00413 * 1 2 3 31 31 H 1.09002 * 109.46861 * 149.99790 * 1 2 3 32 32 H 1.09007 * 109.46827 * 29.95332 * 6 5 4 33 33 H 1.08994 * 109.47659 * 149.95422 * 6 5 4 34 34 H 1.00903 * 110.99502 * 303.94649 * 7 6 5 35 35 H 1.09001 * 110.72261 * 324.77985 * 10 8 7 36 36 H 1.09002 * 110.72064 * 88.05600 * 10 8 7 37 37 H 1.08998 * 109.47290 * 179.33793 * 13 11 10 38 38 H 1.08996 * 109.46613 * 299.33827 * 13 11 10 39 39 H 1.09002 * 109.47140 * 59.33112 * 13 11 10 40 40 H 1.09000 * 109.46569 * 299.99539 * 17 15 14 41 41 H 1.08995 * 109.47130 * 59.99887 * 17 15 14 42 42 H 0.97005 * 120.00149 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.36377 * 217.03268 * 27 14 11 44 44 H 1.09001 * 110.46008 * 94.76253 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4371 0.0014 7 7 5.2093 -1.7028 -1.3833 8 6 6.4437 -2.4984 -1.4215 9 1 7.1232 -2.1999 -0.6232 10 6 7.1319 -2.3907 -2.8079 11 6 7.9200 -3.7140 -2.9062 12 1 7.8774 -4.0960 -3.9262 13 6 9.3765 -3.4876 -2.4960 14 7 7.2845 -4.6698 -1.9874 15 6 7.6904 -5.9359 -1.7669 16 8 8.6582 -6.3731 -2.3524 17 6 6.9415 -6.8083 -0.7926 18 16 7.7243 -8.4386 -0.7176 19 6 6.6772 -9.2268 0.4601 20 1 5.8474 -8.6869 0.8916 21 6 6.9183 -10.5420 0.8324 22 7 6.1358 -11.1310 1.7118 23 14 8.3532 -11.4762 0.0855 24 1 9.5629 -11.2783 0.9239 25 1 8.0242 -12.9231 0.0251 26 1 8.6132 -10.9699 -1.2860 27 6 6.1303 -4.0135 -1.3466 28 7 2.3030 -1.0841 0.0002 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 5.5840 -0.8852 0.5153 33 1 4.6204 -2.3818 0.5155 34 1 4.4709 -2.1567 -1.8997 35 1 6.3892 -2.3242 -3.6030 36 1 7.8078 -1.5362 -2.8376 37 1 9.9218 -4.4294 -2.5573 38 1 9.8334 -2.7590 -3.1655 39 1 9.4119 -3.1132 -1.4729 40 1 6.9618 -6.3493 0.1959 41 1 5.9082 -6.9166 -1.1218 42 1 6.3045 -12.0501 1.9724 43 1 6.0416 -4.3316 -0.3078 44 1 5.2133 -4.2387 -1.8911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676707607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = 39.755863 kcal Electronic energy + Delta-G solvation = -26501.717932 eV Core-core repulsion = 22583.859050 eV Total energy + Delta-G solvation = -3917.858882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -45.96001 -40.34706 -38.07187 -36.55353 -35.87446 -33.27500 -32.47161 -32.31394 -30.26610 -29.46204 -28.90284 -26.54731 -25.96781 -25.63638 -23.89633 -22.66028 -21.91626 -21.06073 -19.15749 -18.53211 -17.95295 -17.75821 -16.92168 -16.59643 -16.03750 -15.50195 -15.12021 -14.96468 -14.85015 -14.47292 -14.17742 -14.00733 -13.99037 -13.44340 -13.38267 -13.29445 -13.20115 -12.88824 -12.81475 -12.67476 -12.54818 -12.19715 -11.96362 -11.81945 -11.71192 -11.44116 -11.29526 -11.19940 -11.03424 -10.88116 -10.64046 -10.34734 -9.88225 -9.58196 -9.14423 -9.03091 -8.66273 -8.53330 -6.95470 -6.31598 -4.03754 0.70677 1.79298 2.34070 2.61965 2.89088 3.08595 3.20425 3.30986 3.48223 3.51301 3.61780 3.68926 4.13955 4.24448 4.30814 4.41888 4.54724 4.67391 4.72121 4.83605 4.88228 4.95551 4.95864 5.00219 5.07437 5.12778 5.20905 5.27318 5.30785 5.40655 5.47016 5.51782 5.58835 5.60667 5.66007 5.72152 5.94832 5.96886 6.18293 6.23175 6.43039 6.59401 7.51093 7.77971 7.91342 8.38420 8.39366 9.14509 10.77602 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.002412 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.519902 B =11607.412288 C =13619.897961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.385 5.385 4 O 0.087 5.913 5 C 0.189 3.811 6 C 0.147 3.853 7 N -0.669 5.669 8 C 0.078 3.922 9 H 0.104 0.896 10 C -0.113 4.113 11 C 0.135 3.865 12 H 0.076 0.924 13 C -0.164 4.164 14 N -0.618 5.618 15 C 0.548 3.452 16 O -0.513 6.513 17 C -0.119 4.119 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.070 3.930 28 N -0.476 5.476 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.354 0.646 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 25.326 -5.447 26.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.093 5.093 4 O 0.028 5.972 5 C -0.033 4.033 6 C 0.016 3.984 7 N -0.302 5.302 8 C -0.032 4.032 9 H 0.122 0.878 10 C -0.152 4.152 11 C 0.031 3.969 12 H 0.094 0.906 13 C -0.222 4.222 14 N -0.356 5.356 15 C 0.337 3.663 16 O -0.387 6.387 17 C -0.269 4.269 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.056 4.056 28 N -0.211 5.211 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.174 0.826 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.315 25.541 -6.259 26.648 hybrid contribution -1.018 -1.014 0.922 1.707 sum -5.333 24.527 -5.337 25.661 Atomic orbital electron populations 1.20161 0.82842 1.04782 1.04421 1.25925 1.00675 0.83401 1.00512 1.74667 0.89451 1.23958 1.21198 1.85306 1.22196 1.24671 1.65000 1.28569 0.96496 0.82325 0.95893 1.20447 0.88416 0.97150 0.92374 1.60559 1.07305 1.51210 1.11141 1.22819 0.91250 0.89488 0.99679 0.87762 1.22707 0.99357 0.96712 0.96420 1.21548 0.93246 0.88047 0.94028 0.90624 1.22160 0.95584 1.03150 1.01308 1.48428 1.30533 1.11875 1.44729 1.19970 0.84183 0.79765 0.82411 1.90694 1.26849 1.71908 1.49206 1.23269 1.03083 1.00034 1.00530 1.84796 1.43009 1.05268 1.58383 1.22295 1.16586 1.01092 1.26903 0.89429 1.24712 0.96266 0.96396 0.93920 1.69936 1.37619 1.13407 1.30691 0.86738 0.82725 0.79950 0.82466 1.19180 1.19914 1.15913 1.23082 0.90057 0.93315 0.99165 1.71938 0.99755 1.29567 1.19873 0.89233 0.89480 0.88876 0.86677 0.89454 0.82612 0.90057 0.89220 0.90712 0.91869 0.92559 0.88723 0.88677 0.91909 0.90117 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.17 1.59 8.22 -156.37 -1.28 0.31 16 3 N -0.39 -4.06 12.16 30.90 0.38 -3.69 16 4 O 0.09 0.84 11.31 18.11 0.20 1.04 16 5 C 0.19 1.56 8.03 -13.06 -0.10 1.45 16 6 C 0.15 0.79 6.18 -4.98 -0.03 0.76 16 7 N -0.67 -3.85 6.37 -105.73 -0.67 -4.52 16 8 C 0.08 0.49 3.32 -65.57 -0.22 0.28 16 9 H 0.10 0.60 7.92 -51.93 -0.41 0.19 16 10 C -0.11 -0.77 6.19 -24.89 -0.15 -0.93 16 11 C 0.14 1.39 3.49 -66.94 -0.23 1.15 16 12 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 13 C -0.16 -1.72 9.07 37.16 0.34 -1.38 16 14 N -0.62 -7.75 3.08 -163.01 -0.50 -8.25 16 15 C 0.55 9.60 7.65 -10.99 -0.08 9.51 16 16 O -0.51 -10.79 14.75 5.56 0.08 -10.71 16 17 C -0.12 -2.26 5.16 36.01 0.19 -2.08 16 18 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 19 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 22 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 23 Si 0.86 21.62 27.74 -169.99 -4.72 16.91 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 C 0.07 0.61 6.27 -2.53 -0.02 0.60 16 28 N -0.48 -4.71 11.55 -9.87 -0.11 -4.82 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.12 0.41 8.09 -51.92 -0.42 -0.01 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.35 2.12 8.29 -39.29 -0.33 1.79 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.52 7.83 -51.93 -0.41 0.11 16 37 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 0.71 7.48 -51.93 -0.39 0.32 16 44 H 0.07 0.59 7.80 -51.93 -0.40 0.19 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -35.30 381.65 -8.31 -43.62 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.50 Total: -2.02 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.01 Total: -2.17 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.14 Total: -46.89 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.29 Total: -9.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.91 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.30 -8.31 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676707607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.373 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds