Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29951 * 126.28850 * 2 1 4 4 O 1.21300 * 110.25010 * 179.97438 * 3 2 1 5 5 C 1.33641 * 109.81196 * 0.02562 * 4 3 2 6 6 C 1.50699 * 126.55380 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47196 * 269.95915 * 6 5 4 8 8 C 1.46899 * 111.00172 * 180.02562 * 7 6 5 9 9 H 1.09000 * 110.88295 * 322.56220 * 8 7 6 10 10 C 1.55157 * 111.00091 * 198.64792 * 8 7 6 11 11 C 1.54327 * 102.94217 * 206.41785 * 10 8 7 12 12 H 1.09000 * 109.88550 * 141.60805 * 11 10 8 13 13 C 1.53005 * 110.01314 * 262.70598 * 11 10 8 14 14 N 1.47028 * 107.26942 * 22.19268 * 11 10 8 15 15 C 1.34774 * 125.64776 * 181.09732 * 14 11 10 16 16 O 1.21276 * 120.00310 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99672 * 179.97438 * 15 14 11 18 18 S 1.81002 * 109.46838 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99836 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00497 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00085 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00067 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47154 * 89.99687 * 23 21 19 25 25 H 1.48504 * 109.47036 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.46864 * 329.99653 * 23 21 19 27 27 C 1.47428 * 108.69939 * 1.05903 * 14 11 10 28 28 N 1.31134 * 106.89855 * 359.97438 * 5 4 3 29 29 H 1.08994 * 109.47484 * 270.00619 * 1 2 3 30 30 H 1.09006 * 109.46887 * 30.00413 * 1 2 3 31 31 H 1.09002 * 109.46861 * 149.99790 * 1 2 3 32 32 H 1.09007 * 109.46827 * 29.95332 * 6 5 4 33 33 H 1.08994 * 109.47659 * 149.95422 * 6 5 4 34 34 H 1.00903 * 110.99502 * 303.94649 * 7 6 5 35 35 H 1.09001 * 110.72261 * 324.77985 * 10 8 7 36 36 H 1.09002 * 110.72064 * 88.05600 * 10 8 7 37 37 H 1.08998 * 109.47290 * 179.33793 * 13 11 10 38 38 H 1.08996 * 109.46613 * 299.33827 * 13 11 10 39 39 H 1.09002 * 109.47140 * 59.33112 * 13 11 10 40 40 H 1.09000 * 109.46569 * 299.99539 * 17 15 14 41 41 H 1.08995 * 109.47130 * 59.99887 * 17 15 14 42 42 H 0.97005 * 120.00149 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.36377 * 217.03268 * 27 14 11 44 44 H 1.09001 * 110.46008 * 94.76253 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4371 0.0014 7 7 5.2093 -1.7028 -1.3833 8 6 6.4437 -2.4984 -1.4215 9 1 7.1232 -2.1999 -0.6232 10 6 7.1319 -2.3907 -2.8079 11 6 7.9200 -3.7140 -2.9062 12 1 7.8774 -4.0960 -3.9262 13 6 9.3765 -3.4876 -2.4960 14 7 7.2845 -4.6698 -1.9874 15 6 7.6904 -5.9359 -1.7669 16 8 8.6582 -6.3731 -2.3524 17 6 6.9415 -6.8083 -0.7926 18 16 7.7243 -8.4386 -0.7176 19 6 6.6772 -9.2268 0.4601 20 1 5.8474 -8.6869 0.8916 21 6 6.9183 -10.5420 0.8324 22 7 6.1358 -11.1310 1.7118 23 14 8.3532 -11.4762 0.0855 24 1 9.5629 -11.2783 0.9239 25 1 8.0242 -12.9231 0.0251 26 1 8.6132 -10.9699 -1.2860 27 6 6.1303 -4.0135 -1.3466 28 7 2.3030 -1.0841 0.0002 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 5.5840 -0.8852 0.5153 33 1 4.6204 -2.3818 0.5155 34 1 4.4709 -2.1567 -1.8997 35 1 6.3892 -2.3242 -3.6030 36 1 7.8078 -1.5362 -2.8376 37 1 9.9218 -4.4294 -2.5573 38 1 9.8334 -2.7590 -3.1655 39 1 9.4119 -3.1132 -1.4729 40 1 6.9618 -6.3493 0.1959 41 1 5.9082 -6.9166 -1.1218 42 1 6.3045 -12.0501 1.9724 43 1 6.0416 -4.3316 -0.3078 44 1 5.2133 -4.2387 -1.8911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676707607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = 12.733208 kcal Electronic energy + Delta-G solvation = -26502.889722 eV Core-core repulsion = 22583.859050 eV Total energy + Delta-G solvation = -3919.030672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.63584 -41.34277 -39.09966 -37.24390 -36.58108 -34.68653 -33.96463 -33.35831 -30.92438 -30.29700 -30.01587 -27.86709 -27.14463 -26.73144 -24.56301 -23.55741 -22.49005 -21.78962 -20.39577 -19.59213 -19.21569 -18.61735 -18.08033 -17.40298 -17.12577 -16.98901 -16.37159 -16.08410 -15.83400 -15.62144 -15.04392 -14.92460 -14.86154 -14.47821 -14.39801 -14.29899 -14.02704 -13.88513 -13.64700 -13.48966 -13.36431 -13.19837 -13.10865 -13.00168 -12.95453 -12.60402 -12.46277 -12.36506 -12.12724 -11.93028 -11.87371 -11.57164 -11.18260 -11.01053 -10.92790 -10.55105 -9.81161 -9.59805 -9.01820 -8.52775 -6.23873 0.06631 0.95458 1.13381 1.30409 1.44509 1.52388 1.52975 1.76572 2.03171 2.23879 2.60686 2.67200 2.85551 3.00860 3.09439 3.46222 3.57171 3.81677 3.90372 4.04289 4.12517 4.16057 4.26981 4.29268 4.38396 4.39720 4.45158 4.54212 4.56242 4.63833 4.73927 4.75808 4.77957 4.89669 4.99528 5.05538 5.09306 5.16848 5.35322 5.51666 5.69497 5.73243 6.09935 6.10375 6.36644 6.92445 7.08689 7.12716 8.59608 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.002412 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.519902 B =11607.412288 C =13619.897961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.160 3.840 3 N -0.409 5.409 4 O 0.078 5.922 5 C 0.197 3.803 6 C 0.147 3.853 7 N -0.664 5.664 8 C 0.094 3.906 9 H 0.120 0.880 10 C -0.100 4.100 11 C 0.129 3.871 12 H 0.064 0.936 13 C -0.159 4.159 14 N -0.608 5.608 15 C 0.548 3.452 16 O -0.557 6.557 17 C -0.103 4.103 18 S -0.175 6.175 19 C -0.527 4.527 20 H 0.062 0.938 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.261 1.261 25 H -0.259 1.259 26 H -0.238 1.238 27 C 0.059 3.941 28 N -0.501 5.501 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.354 0.646 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.277 0.723 43 H 0.085 0.915 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 27.309 -5.938 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.119 5.119 4 O 0.022 5.978 5 C -0.024 4.024 6 C 0.017 3.983 7 N -0.297 5.297 8 C -0.017 4.017 9 H 0.137 0.863 10 C -0.139 4.139 11 C 0.026 3.974 12 H 0.082 0.918 13 C -0.217 4.217 14 N -0.343 5.343 15 C 0.336 3.664 16 O -0.435 6.435 17 C -0.254 4.254 18 S 0.052 5.948 19 C -0.675 4.675 20 H 0.080 0.920 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.066 4.066 28 N -0.236 5.236 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.113 0.887 34 H 0.174 0.826 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.203 27.574 -6.747 28.697 hybrid contribution -1.158 -1.473 1.067 2.156 sum -5.361 26.101 -5.680 27.245 Atomic orbital electron populations 1.20331 0.80856 1.05651 1.05417 1.26555 1.02034 0.83112 0.99587 1.74657 0.89904 1.24747 1.22612 1.85270 1.21957 1.25274 1.65323 1.29096 0.97011 0.82028 0.94296 1.20678 0.87908 0.97360 0.92363 1.60556 1.07149 1.50656 1.11337 1.22723 0.91630 0.87393 0.99934 0.86252 1.22660 0.99391 0.94940 0.96877 1.21786 0.93774 0.89030 0.92815 0.91752 1.22113 0.95284 1.01791 1.02550 1.48356 1.31091 1.10514 1.44323 1.19599 0.83640 0.81198 0.82002 1.90679 1.28688 1.73261 1.50901 1.23221 1.03129 0.96734 1.02315 1.84724 1.43398 1.09487 1.57184 1.22428 1.16288 1.01403 1.27357 0.91979 1.25552 0.98671 0.97366 0.94356 1.70012 1.39290 1.14153 1.31999 0.85881 0.79778 0.79286 0.81523 1.18599 1.18340 1.16144 1.23440 0.88934 0.94993 0.99195 1.71962 1.00566 1.30068 1.21038 0.88081 0.88422 0.88161 0.84310 0.88719 0.82623 0.89306 0.87179 0.94633 0.89340 0.91725 0.87178 0.87598 0.91339 0.89710 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.16 2.87 8.22 138.46 1.14 4.01 16 3 N -0.41 -8.28 12.16 -60.31 -0.73 -9.01 16 4 O 0.08 1.40 11.31 74.85 0.85 2.25 16 5 C 0.20 2.89 8.03 88.38 0.71 3.59 16 6 C 0.15 1.14 6.18 85.56 0.53 1.67 16 7 N -0.66 -5.37 6.37 -488.43 -3.11 -8.48 16 8 C 0.09 0.84 3.32 46.30 0.15 0.99 16 9 H 0.12 0.81 7.92 -2.39 -0.02 0.80 16 10 C -0.10 -1.00 6.19 31.78 0.20 -0.80 16 11 C 0.13 2.38 3.49 45.34 0.16 2.54 16 12 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 13 C -0.16 -3.06 9.07 71.98 0.65 -2.41 16 14 N -0.61 -14.20 3.08 -788.04 -2.43 -16.63 16 15 C 0.55 18.86 7.65 87.66 0.67 19.53 16 16 O -0.56 -23.70 14.75 -3.02 -0.04 -23.74 16 17 C -0.10 -3.88 5.16 71.24 0.37 -3.51 16 18 S -0.17 -8.79 18.55 -56.49 -1.05 -9.84 16 19 C -0.53 -30.49 10.04 67.95 0.68 -29.81 16 20 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 21 C 0.05 2.69 5.50 84.86 0.47 3.16 16 22 N -0.92 -55.57 13.97 21.65 0.30 -55.26 16 23 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 24 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 27 C 0.06 0.88 6.27 86.85 0.54 1.42 16 28 N -0.50 -9.25 11.55 -303.18 -3.50 -12.76 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.14 0.46 8.09 -2.38 -0.02 0.44 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.35 3.16 8.29 -89.69 -0.74 2.41 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.76 7.83 -2.39 -0.02 0.74 16 37 H 0.03 0.98 6.73 -2.39 -0.02 0.96 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 3.78 7.85 -2.39 -0.02 3.76 16 41 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 42 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.08 1.24 7.48 -2.39 -0.02 1.22 16 44 H 0.08 1.11 7.80 -2.39 -0.02 1.09 16 Total: -1.00 -78.58 381.65 -0.55 -79.14 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.24 Total: 7.15 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 7.02 Total: 0.45 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -9.47 Total: -102.14 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.80 Total: -21.50 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.79 SS G_CDS: -1.05 Total: -9.84 kcal Total: -78.58 -0.55 -79.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676707607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.870 kcal (2) G-P(sol) polarization free energy of solvation -78.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds