Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.39867 * 125.89457 * 124.99912 * 10 9 7 12 12 C 1.35314 * 107.91704 * 180.02562 * 11 10 9 13 13 N 1.34942 * 107.74746 * 359.97438 * 12 11 10 14 14 H 0.97001 * 126.04006 * 180.02562 * 13 12 11 15 15 N 1.30833 * 125.89741 * 304.69610 * 10 9 7 16 16 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 17 17 C 1.34782 * 119.99726 * 274.99704 * 16 3 2 18 18 O 1.21278 * 120.00302 * 0.02562 * 17 16 3 19 19 C 1.50704 * 119.99703 * 179.97438 * 17 16 3 20 20 S 1.80999 * 109.46986 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99763 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00242 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99547 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00072 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99596 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46970 * 90.00304 * 25 23 21 27 27 H 1.48503 * 109.46793 * 209.99826 * 25 23 21 28 28 H 1.48498 * 109.47251 * 329.99895 * 25 23 21 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 1.08000 * 126.04304 * 0.02562 * 11 10 9 40 40 H 1.08001 * 126.12942 * 179.97438 * 12 11 10 41 41 H 0.97000 * 120.00390 * 95.00648 * 16 3 2 42 42 H 1.09000 * 109.47086 * 300.00860 * 19 17 16 43 43 H 1.09006 * 109.46761 * 60.00688 * 19 17 16 44 44 H 0.97002 * 119.99419 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 6 7.4014 4.4748 -0.0701 11 6 8.1516 5.2315 -0.9761 12 6 9.4594 4.9534 -0.7680 13 7 9.5341 4.0533 0.2346 14 1 10.3478 3.6711 0.5990 15 7 8.2293 3.7725 0.6600 16 7 1.6524 2.0974 1.2519 17 6 0.4350 2.6644 1.3669 18 8 -0.3397 2.6320 0.4344 19 6 0.0361 3.3376 2.6549 20 16 -1.6428 3.9952 2.4970 21 6 -1.8445 4.7062 4.0966 22 1 -1.0441 4.6460 4.8191 23 6 -3.0321 5.3438 4.4278 24 7 -4.0078 5.4167 3.5473 25 14 -3.2462 6.0970 6.1238 26 1 -2.7844 7.5081 6.1005 27 1 -4.6799 6.0516 6.5081 28 1 -2.4446 5.3300 7.1109 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 7.7569 5.9165 -1.7118 40 1 10.2940 5.3762 -1.3075 41 1 2.2718 2.1232 1.9979 42 1 0.0671 2.6128 3.4685 43 1 0.7275 4.1529 2.8680 44 1 -4.8376 5.8626 3.7788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704638509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -7.721448 kcal Electronic energy + Delta-G solvation = -26185.066262 eV Core-core repulsion = 22265.148609 eV Total energy + Delta-G solvation = -3919.917653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47002 -40.08690 -39.26070 -36.46476 -34.00077 -33.24236 -32.45697 -32.41284 -30.21432 -29.85454 -28.98114 -27.63361 -25.50007 -23.62809 -21.94823 -21.48229 -20.91652 -20.37212 -19.77366 -18.41886 -17.91295 -17.27845 -16.68826 -16.36668 -15.84455 -15.62570 -15.23903 -14.82278 -14.73606 -14.42561 -14.18144 -13.82401 -13.67887 -13.57928 -13.45200 -13.32483 -13.05806 -12.94216 -12.53682 -12.39991 -12.16149 -11.74876 -11.45372 -11.19277 -11.08132 -11.03541 -10.90678 -10.79738 -10.75167 -10.10125 -9.83176 -9.65604 -9.43803 -9.26961 -9.08865 -9.00884 -8.90634 -8.26511 -6.52276 -6.23974 -3.94447 1.63818 2.38373 2.48757 2.60048 2.94850 3.01628 3.10917 3.20873 3.26840 3.30836 3.68093 4.18491 4.24474 4.42485 4.46852 4.73085 4.84088 4.90862 5.03046 5.11024 5.11500 5.12980 5.26534 5.33860 5.43667 5.44944 5.47215 5.59886 5.67522 5.79251 5.84499 5.89626 6.05273 6.11272 6.19017 6.24295 6.29541 6.57383 6.63612 6.98636 7.27263 7.41654 7.57632 7.64876 8.04354 8.33077 8.56721 9.21755 10.83317 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.002260 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.290801 B =12385.485639 C =14326.725527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.135 3.865 4 H 0.096 0.904 5 C 0.115 3.885 6 N -0.731 5.731 7 C 0.517 3.483 8 O -0.526 6.526 9 C -0.062 4.062 10 C 0.086 3.914 11 C -0.266 4.266 12 C 0.053 3.947 13 N -0.478 5.478 14 H 0.438 0.562 15 N -0.263 5.263 16 N -0.736 5.736 17 C 0.533 3.467 18 O -0.509 6.509 19 C -0.155 4.155 20 S -0.058 6.058 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.176 0.824 41 H 0.398 0.602 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.491 -3.469 -8.841 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.029 3.971 4 H 0.114 0.886 5 C -0.010 4.010 6 N -0.384 5.384 7 C 0.302 3.698 8 O -0.401 6.401 9 C -0.104 4.104 10 C -0.082 4.082 11 C -0.296 4.296 12 C -0.094 4.094 13 N -0.186 5.186 14 H 0.282 0.718 15 N -0.086 5.086 16 N -0.391 5.391 17 C 0.319 3.681 18 O -0.382 6.382 19 C -0.306 4.306 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.240 0.760 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.166 0.834 40 H 0.193 0.807 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 23.680 -4.967 -9.652 26.049 hybrid contribution 1.169 1.302 2.091 2.727 sum 24.848 -3.665 -7.561 26.231 Atomic orbital electron populations 1.21804 0.94012 1.00705 1.03848 1.21880 0.97785 0.95026 1.02179 1.21246 0.92389 0.94674 0.88755 0.88604 1.21651 0.92663 0.83560 1.03078 1.45963 1.07455 1.10014 1.74991 1.20370 0.82014 0.90985 0.76465 1.90748 1.55684 1.46178 1.47509 1.20046 0.88875 0.95544 1.05935 1.21532 0.94891 0.96076 0.95690 1.21406 0.92141 1.09244 1.06768 1.22559 0.99253 0.94257 0.93298 1.46384 1.07892 1.35286 1.29051 0.71811 1.77399 0.86983 1.21616 1.22595 1.46132 1.17434 1.59434 1.16141 1.20259 0.80780 0.77476 0.89576 1.90720 1.50250 1.57180 1.40072 1.23552 1.07047 1.02844 0.97133 1.85374 1.06420 1.70880 1.20460 1.22865 1.03895 1.42110 0.99546 0.90965 1.24987 0.94841 0.95574 0.98166 1.70015 1.04997 1.40944 1.34299 0.86180 0.77592 0.79372 0.82433 1.20263 1.20762 1.19711 0.93616 0.91734 0.92002 0.91210 0.91728 0.90135 0.90896 0.75952 0.86672 0.86908 0.83385 0.80722 0.76756 0.89344 0.89301 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.51 37.15 0.32 -1.62 16 2 C -0.13 -1.32 5.61 -26.73 -0.15 -1.47 16 3 C 0.13 1.37 2.42 -67.93 -0.16 1.21 16 4 H 0.10 1.12 7.58 -51.93 -0.39 0.73 16 5 C 0.11 1.04 5.23 -4.04 -0.02 1.02 16 6 N -0.73 -6.42 5.39 -60.30 -0.32 -6.75 16 7 C 0.52 5.51 7.82 -10.98 -0.09 5.43 16 8 O -0.53 -7.81 15.57 5.55 0.09 -7.72 16 9 C -0.06 -0.51 6.28 -29.03 -0.18 -0.69 16 10 C 0.09 0.90 6.01 -82.41 -0.50 0.41 16 11 C -0.27 -2.21 10.72 -40.01 -0.43 -2.64 16 12 C 0.05 0.36 11.99 -17.23 -0.21 0.15 16 13 N -0.48 -3.95 7.36 30.44 0.22 -3.73 16 14 H 0.44 2.21 8.96 -182.61 -1.64 0.57 16 15 N -0.26 -3.17 12.06 33.67 0.41 -2.76 16 16 N -0.74 -8.39 4.47 -53.80 -0.24 -8.63 16 17 C 0.53 8.73 6.42 -10.98 -0.07 8.66 16 18 O -0.51 -10.11 13.00 5.56 0.07 -10.04 16 19 C -0.16 -2.90 6.16 36.01 0.22 -2.68 16 20 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 21 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 22 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 25 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.04 5.64 -51.93 -0.29 0.74 16 31 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.41 3.10 8.14 -40.82 -0.33 2.76 16 37 H 0.12 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.18 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.40 3.75 8.60 -40.82 -0.35 3.39 16 42 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 43 H 0.09 1.52 8.14 -51.91 -0.42 1.09 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -38.05 386.93 -9.12 -47.18 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.61 Total: 4.08 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.07 Total: -4.85 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.80 Total: -46.81 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.16 Total: -17.76 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.05 -9.12 -47.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704638509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.454 kcal (2) G-P(sol) polarization free energy of solvation -38.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds