Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30271 * 126.28569 * 2 1 4 4 N 1.28664 * 109.38524 * 179.73387 * 3 2 1 5 5 C 1.30277 * 109.37757 * 0.45002 * 4 3 2 6 6 C 1.50703 * 126.28224 * 179.82662 * 5 4 3 7 7 N 1.46897 * 109.46930 * 89.68810 * 6 5 4 8 8 C 1.46903 * 110.99735 * 179.97438 * 7 6 5 9 9 H 1.09001 * 112.90681 * 336.25614 * 8 7 6 10 10 C 1.53782 * 113.61252 * 107.50003 * 8 7 6 11 11 C 1.53785 * 87.08069 * 139.98002 * 10 8 7 12 12 H 1.09006 * 113.68612 * 89.12534 * 11 10 8 13 13 C 1.52997 * 113.61712 * 220.01782 * 11 10 8 14 14 N 1.46505 * 109.47212 * 272.49768 * 13 11 10 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 11 16 16 O 1.21280 * 120.00597 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99622 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.47156 * 180.02562 * 17 15 14 19 19 C 1.76204 * 100.00151 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99845 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00054 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00100 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47251 * 59.99888 * 23 21 19 25 25 H 1.48499 * 109.47003 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47069 * 299.99979 * 23 21 19 27 27 C 1.53781 * 87.08073 * 334.56795 * 11 10 8 28 28 O 1.34361 * 126.28160 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.46566 * 269.99620 * 1 2 3 30 30 H 1.08998 * 109.46901 * 29.99299 * 1 2 3 31 31 H 1.08997 * 109.46961 * 149.99310 * 1 2 3 32 32 H 1.08998 * 109.46846 * 329.68824 * 6 5 4 33 33 H 1.09000 * 109.46950 * 209.69029 * 6 5 4 34 34 H 1.00897 * 111.00027 * 303.94965 * 7 6 5 35 35 H 1.08998 * 113.61542 * 25.43448 * 10 8 7 36 36 H 1.08998 * 113.61766 * 254.53157 * 10 8 7 37 37 H 1.09002 * 109.47153 * 152.49760 * 13 11 10 38 38 H 1.09001 * 109.46832 * 32.49951 * 13 11 10 39 39 H 0.96996 * 119.99606 * 0.02562 * 14 13 11 40 40 H 1.09001 * 109.47380 * 300.00190 * 17 15 14 41 41 H 1.09002 * 109.47060 * 60.00278 * 17 15 14 42 42 H 0.96999 * 120.00126 * 180.02562 * 22 21 19 43 43 H 1.09003 * 113.61181 * 139.97823 * 27 11 10 44 44 H 1.08992 * 113.61416 * 270.79875 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5091 0.6761 0.0056 5 6 3.5654 -0.6255 -0.0002 6 6 4.8177 -1.4639 -0.0004 7 7 5.2245 -1.7365 1.3846 8 6 6.4445 -2.5540 1.4236 9 1 6.5920 -3.1396 0.5162 10 6 7.6948 -1.7741 1.8635 11 6 8.0929 -3.0217 2.6698 12 1 8.6913 -3.7360 2.1042 13 6 8.6904 -2.7003 4.0411 14 7 10.1353 -2.4977 3.9090 15 6 10.8762 -2.2010 4.9950 16 8 10.3469 -2.1022 6.0817 17 6 12.3626 -1.9932 4.8591 18 16 13.0694 -1.6129 6.4814 19 6 14.7646 -1.4229 6.0398 20 1 15.0720 -1.5469 5.0119 21 6 15.7050 -1.1150 7.0131 22 7 15.3306 -0.9654 8.2661 23 14 17.5022 -0.9144 6.5450 24 1 17.6364 0.1851 5.5559 25 1 18.2962 -0.5900 7.7572 26 1 18.0029 -2.1794 5.9498 27 6 6.5964 -3.3724 2.7167 28 8 2.3021 -1.0831 -0.0005 29 1 -0.3632 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 5.6147 -0.9264 -0.5141 33 1 4.6244 -2.4055 -0.5143 34 1 5.3473 -0.8784 1.9009 35 1 7.4721 -0.9060 2.4839 36 1 8.3779 -1.5467 1.0452 37 1 8.5006 -3.5289 4.7234 38 1 8.2308 -1.7934 4.4341 39 1 10.5585 -2.5764 3.0397 40 1 12.8220 -2.9005 4.4667 41 1 12.5528 -1.1651 4.1764 42 1 15.9878 -0.7498 8.9462 43 1 6.3928 -4.4354 2.5870 44 1 6.0738 -2.9425 3.5710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707058486.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = 19.695075 kcal Electronic energy + Delta-G solvation = -25055.360938 eV Core-core repulsion = 21136.632155 eV Total energy + Delta-G solvation = -3918.728783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.67628 -40.11484 -38.83246 -36.61489 -35.90719 -34.09904 -32.97531 -32.42136 -30.11802 -29.24113 -27.25166 -26.07288 -25.93117 -25.40731 -23.18298 -22.72884 -22.05082 -20.60983 -19.81567 -17.97694 -17.80403 -17.66035 -16.51965 -16.38580 -16.18156 -15.70668 -15.43636 -15.32969 -14.82306 -14.79448 -14.75074 -13.96069 -13.85379 -13.66417 -13.53809 -13.29713 -13.07806 -12.84820 -12.81781 -12.59297 -12.47589 -12.33185 -12.29434 -11.74396 -11.48755 -11.31705 -11.04203 -11.03405 -10.95955 -10.75100 -10.70673 -10.02400 -9.81502 -9.37393 -9.08100 -9.05583 -8.85086 -8.23054 -6.49223 -6.20758 -3.91478 0.63207 1.73629 1.89709 3.04306 3.12027 3.21300 3.23931 3.28142 3.31859 3.58335 3.73922 3.87369 4.12927 4.18307 4.21336 4.24482 4.43772 4.48677 4.60177 4.67917 4.72700 4.84088 4.89996 5.00090 5.05290 5.11657 5.14256 5.19705 5.26897 5.37170 5.39876 5.48102 5.58759 5.62061 5.76910 5.82034 5.90908 5.98878 6.14554 6.35532 6.62451 6.65441 7.59779 7.72956 7.82880 8.35633 8.63584 9.24320 10.86634 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.027494 B = 0.001399 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.175077 B =20016.588772 C =20253.661587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.164 3.836 3 N -0.290 5.290 4 N -0.281 5.281 5 C 0.167 3.833 6 C 0.154 3.846 7 N -0.676 5.676 8 C 0.067 3.933 9 H 0.103 0.897 10 C -0.163 4.163 11 C -0.121 4.121 12 H 0.098 0.902 13 C 0.133 3.867 14 N -0.738 5.738 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.115 4.115 28 O -0.218 6.218 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.354 0.646 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.074 0.926 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.691 -4.403 -21.882 35.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 N -0.137 5.137 4 N -0.128 5.128 5 C -0.044 4.044 6 C 0.024 3.976 7 N -0.309 5.309 8 C -0.043 4.043 9 H 0.121 0.879 10 C -0.202 4.202 11 C -0.141 4.141 12 H 0.116 0.884 13 C 0.009 3.991 14 N -0.393 5.393 15 C 0.316 3.684 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.154 4.154 28 O -0.096 6.096 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.175 0.825 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -28.605 -3.498 -19.800 34.965 hybrid contribution 2.274 -0.534 -2.224 3.225 sum -26.331 -4.031 -22.024 34.563 Atomic orbital electron populations 1.20385 0.80069 1.05765 1.05474 1.28097 0.97969 0.79609 0.99055 1.74423 0.95971 1.25604 1.17746 1.74417 1.12520 1.09204 1.16680 1.27842 0.85343 0.91363 0.99877 1.20361 0.86721 0.97845 0.92704 1.60454 1.35477 1.24158 1.10804 1.23085 0.86340 0.95578 0.99277 0.87875 1.23815 0.98182 0.97734 1.00457 1.22641 0.96798 0.98306 0.96322 0.88360 1.21245 0.80597 1.01515 0.95778 1.45996 1.07998 1.74362 1.10914 1.20311 0.88754 0.75526 0.83788 1.90704 1.73329 1.48950 1.26293 1.23532 0.93928 1.04758 1.08202 1.85402 1.04704 1.91444 1.01837 1.22831 0.92694 1.55874 0.97092 0.90997 1.24984 0.99467 0.94617 0.94449 1.70008 1.34915 1.44838 1.00531 0.86228 0.82529 0.78761 0.78003 1.19946 1.20796 1.19949 1.23041 0.94132 1.00430 0.97794 1.84797 1.17468 1.38184 1.69197 0.88091 0.87454 0.88793 0.89790 0.87537 0.82545 0.89259 0.90971 0.91482 0.91573 0.76919 0.89271 0.89287 0.92126 0.90728 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 36.01 0.38 0.23 16 2 C 0.16 1.27 8.48 -12.94 -0.11 1.16 16 3 N -0.29 -3.14 12.22 32.55 0.40 -2.74 16 4 N -0.28 -3.10 12.22 32.55 0.40 -2.71 16 5 C 0.17 1.43 7.99 -12.94 -0.10 1.33 16 6 C 0.15 0.83 6.15 -4.98 -0.03 0.80 16 7 N -0.68 -4.16 6.61 -107.13 -0.71 -4.86 16 8 C 0.07 0.35 4.18 -66.90 -0.28 0.07 16 9 H 0.10 0.40 7.87 -51.93 -0.41 -0.01 16 10 C -0.16 -1.00 7.25 -25.92 -0.19 -1.18 16 11 C -0.12 -0.83 3.75 -89.81 -0.34 -1.17 16 12 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 13 C 0.13 1.45 5.51 -4.04 -0.02 1.43 16 14 N -0.74 -9.50 5.56 -60.29 -0.33 -9.83 16 15 C 0.53 9.87 7.85 -10.99 -0.09 9.79 16 16 O -0.52 -11.88 15.86 5.56 0.09 -11.79 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.12 -0.72 7.44 -25.92 -0.19 -0.91 16 28 O -0.22 -1.84 10.87 5.39 0.06 -1.79 16 29 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.11 0.39 8.13 -51.93 -0.42 -0.03 16 34 H 0.35 2.43 8.19 -39.29 -0.32 2.11 16 35 H 0.09 0.64 7.58 -51.93 -0.39 0.25 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 39 H 0.40 3.90 8.47 -40.82 -0.35 3.56 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -37.84 391.99 -7.74 -45.58 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.49 Total: -0.40 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.55 Total: -4.37 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.49 Total: -45.68 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.15 Total: -13.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.84 -7.74 -45.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707058486.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.275 kcal (2) G-P(sol) polarization free energy of solvation -37.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds