Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21688 * 119.99845 * 359.97438 * 7 6 5 9 9 C 1.46680 * 120.00189 * 180.02562 * 7 6 5 10 10 S 1.76210 * 126.12967 * 359.69247 * 9 7 6 11 11 C 1.70962 * 90.31432 * 179.97438 * 10 9 7 12 12 N 1.29424 * 110.38631 * 0.34600 * 11 10 9 13 13 C 1.30948 * 117.36754 * 359.72063 * 12 11 10 14 14 C 1.50706 * 122.90305 * 179.97438 * 13 12 11 15 15 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 16 16 C 1.46901 * 110.99814 * 300.92314 * 15 3 2 17 17 C 1.50692 * 109.47239 * 185.67747 * 16 15 3 18 18 O 1.21297 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00418 * 179.72333 * 17 16 15 20 20 C 1.37095 * 120.00548 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99701 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46838 * 60.00518 * 24 22 20 26 26 H 1.48502 * 109.47196 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47366 * 300.00596 * 24 22 20 28 28 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 32 32 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 33 33 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 34 34 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 35 35 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 36 36 H 1.07997 * 124.80306 * 180.10192 * 11 10 9 37 37 H 1.08997 * 109.47034 * 270.00319 * 14 13 12 38 38 H 1.08996 * 109.46825 * 30.00629 * 14 13 12 39 39 H 1.09001 * 109.46616 * 150.00303 * 14 13 12 40 40 H 1.00897 * 110.99887 * 64.87330 * 15 3 2 41 41 H 1.09003 * 109.46892 * 65.67283 * 16 15 3 42 42 H 1.09004 * 109.47007 * 305.68019 * 16 15 3 43 43 H 0.97007 * 119.99235 * 0.02562 * 19 17 16 44 44 H 0.97002 * 119.99685 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1644 2.1457 0.2831 9 6 5.8848 4.4369 -0.0156 10 16 4.9071 5.8785 -0.2817 11 6 6.3153 6.8479 -0.2661 12 7 7.3659 6.1139 -0.0859 13 6 7.1831 4.8247 0.0523 14 6 8.3169 3.8554 0.2673 15 7 1.6596 2.0963 -1.2593 16 6 2.2180 1.3802 -2.4140 17 6 1.9261 2.1536 -3.6739 18 8 1.3135 3.1989 -3.6157 19 7 2.3508 1.6871 -4.8648 20 6 2.0848 2.3904 -6.0111 21 1 1.5351 3.3186 -5.9598 22 6 2.5232 1.9096 -7.2389 23 7 3.1925 0.7804 -7.3012 24 14 2.1613 2.8683 -8.8006 25 1 2.7722 4.2185 -8.7053 26 1 2.7316 2.1478 -9.9672 27 1 0.6921 3.0006 -8.9711 28 1 -0.3633 -1.0274 -0.0205 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8428 1.0402 1.1087 34 1 3.9997 0.8294 -0.6518 35 1 3.4419 3.5480 -0.1267 36 1 6.3268 7.9203 -0.3929 37 1 8.6791 3.5002 -0.6974 38 1 9.1269 4.3558 0.7978 39 1 7.9645 3.0092 0.8572 40 1 0.6569 2.1788 -1.3353 41 1 1.7652 0.3910 -2.4816 42 1 3.2964 1.2785 -2.2916 43 1 2.8442 0.8531 -4.9109 44 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714060767.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -29.906732 kcal Electronic energy + Delta-G solvation = -27305.714243 eV Core-core repulsion = 23384.834564 eV Total energy + Delta-G solvation = -3920.879679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43717 -39.40216 -38.49475 -37.27927 -34.23942 -33.89531 -31.99226 -31.83245 -31.17971 -29.53030 -27.84733 -26.51610 -25.14888 -24.30380 -23.58852 -21.43543 -20.54972 -19.51468 -18.96162 -18.48268 -17.92523 -16.87753 -16.85526 -16.02008 -15.66402 -15.44308 -14.96850 -14.91058 -14.51515 -14.24762 -14.17798 -13.94965 -13.78535 -13.67156 -13.50722 -13.19309 -12.66978 -12.58709 -12.45934 -12.34297 -11.96785 -11.80861 -11.51913 -11.46160 -11.36247 -11.07649 -10.88914 -10.84124 -10.45333 -10.22135 -10.18831 -9.79819 -9.67927 -9.50501 -9.12443 -8.90541 -8.54136 -8.11519 -7.96939 -6.42174 -3.83165 0.13453 1.08915 1.46430 2.34551 3.04625 3.15454 3.19002 3.25083 3.29015 3.89517 4.00909 4.07670 4.30592 4.55251 4.73031 4.84936 4.89571 4.93759 5.03862 5.13204 5.21696 5.25180 5.38246 5.52931 5.54787 5.62684 5.67208 5.70400 5.76803 5.78502 5.83853 5.94222 6.03962 6.15314 6.20344 6.24863 6.40596 7.09186 7.38707 7.50971 7.53924 7.54223 8.04903 8.12044 8.60272 9.17009 9.53580 10.04802 10.75431 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008070 B = 0.003648 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3468.609099 B = 7673.643339 C = 9808.972235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.072 3.928 4 H 0.090 0.910 5 C 0.127 3.873 6 N -0.707 5.707 7 C 0.596 3.404 8 O -0.531 6.531 9 C -0.296 4.296 10 S 0.183 5.817 11 C 0.029 3.971 12 N -0.478 5.478 13 C 0.141 3.859 14 C -0.089 4.089 15 N -0.660 5.660 16 C 0.043 3.957 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.409 0.591 36 H 0.205 0.795 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.353 0.647 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.391 0.609 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 3.386 18.137 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.039 4.039 4 H 0.108 0.892 5 C 0.003 3.997 6 N -0.358 5.358 7 C 0.382 3.618 8 O -0.410 6.410 9 C -0.420 4.420 10 S 0.438 5.562 11 C -0.266 4.266 12 N -0.192 5.192 13 C 0.003 3.997 14 C -0.148 4.148 15 N -0.292 5.292 16 C -0.089 4.089 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.222 0.778 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.174 0.826 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.086 4.337 18.015 18.646 hybrid contribution -0.064 -0.944 -1.052 1.415 sum 2.023 3.393 16.963 17.416 Atomic orbital electron populations 1.21755 0.95204 1.02022 1.02033 1.22205 0.96822 0.97795 1.03152 1.21934 0.94125 0.93757 0.94040 0.89155 1.21469 0.93111 0.83031 1.02084 1.45696 1.06575 1.10651 1.72900 1.16646 0.82507 0.85855 0.76840 1.90772 1.55759 1.44354 1.50107 1.25513 0.97646 0.98703 1.20169 1.84222 1.11773 0.97296 1.62870 1.28725 0.91011 1.05244 1.01581 1.66131 1.31929 1.04687 1.16450 1.20731 0.93527 0.90143 0.95289 1.20653 0.93794 0.96700 1.03616 1.60208 1.18166 1.51269 0.99600 1.21771 1.00908 0.95501 0.90767 1.19777 0.85368 0.87899 0.84297 1.90514 1.45092 1.24701 1.86423 1.41857 1.49598 1.23300 1.05201 1.19634 1.33676 1.06222 0.83451 0.88006 1.25255 0.96691 0.96458 0.99454 1.69605 1.37594 1.20046 1.26964 0.85934 0.78779 0.79317 0.80285 1.19902 1.20963 1.19916 0.92458 0.92550 0.92420 0.90957 0.91252 0.90901 0.90970 0.75458 0.77824 0.90039 0.90919 0.88210 0.82607 0.93373 0.89579 0.77545 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.71 37.16 0.36 -1.01 16 2 C -0.16 -1.50 5.17 -26.73 -0.14 -1.63 16 3 C 0.07 0.76 2.70 -67.71 -0.18 0.57 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.13 1.48 4.70 -4.05 -0.02 1.46 16 6 N -0.71 -9.15 5.38 -61.62 -0.33 -9.48 16 7 C 0.60 8.74 7.78 -12.85 -0.10 8.64 16 8 O -0.53 -8.80 14.27 5.20 0.07 -8.73 16 9 C -0.30 -4.04 6.48 -37.10 -0.24 -4.28 16 10 S 0.18 1.99 22.35 -107.50 -2.40 -0.41 16 11 C 0.03 0.30 12.22 51.75 0.63 0.93 16 12 N -0.48 -6.17 10.50 -11.53 -0.12 -6.29 16 13 C 0.14 1.93 6.79 -83.89 -0.57 1.36 16 14 C -0.09 -1.08 9.70 36.01 0.35 -0.73 16 15 N -0.66 -9.18 5.36 -107.99 -0.58 -9.75 16 16 C 0.04 0.71 5.34 -4.98 -0.03 0.69 16 17 C 0.44 10.08 7.83 -10.99 -0.09 9.99 16 18 O -0.58 -15.15 15.90 5.54 0.09 -15.06 16 19 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.57 13.05 55.50 0.72 -23.85 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 6.85 -51.93 -0.36 0.24 16 31 H 0.07 0.76 6.23 -51.93 -0.32 0.43 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.95 6.57 -51.92 -0.34 0.61 16 35 H 0.41 5.16 7.32 -40.82 -0.30 4.86 16 36 H 0.21 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.29 6.01 -51.93 -0.31 0.97 16 40 H 0.35 5.02 7.23 -39.29 -0.28 4.73 16 41 H 0.05 0.73 6.49 -51.93 -0.34 0.39 16 42 H 0.09 1.43 6.15 -51.93 -0.32 1.11 16 43 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -32.86 377.84 -7.98 -40.84 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -5.79 Total: 17.17 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.26 Total: 8.05 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.36 Total: -63.57 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.16 Total: -23.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.40 Total: -0.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.86 -7.98 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714060767.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.934 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds