Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30282 * 126.28225 * 2 1 4 4 N 1.28657 * 109.38001 * 180.02562 * 3 2 1 5 5 C 1.30272 * 109.38570 * 359.97438 * 4 3 2 6 6 C 1.50696 * 126.28590 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47317 * 90.02301 * 6 5 4 8 8 C 1.47844 * 111.00266 * 296.06391 * 7 6 5 9 9 C 1.54905 * 104.79652 * 213.63523 * 8 7 6 10 10 C 1.55141 * 101.65359 * 37.06596 * 9 8 7 11 11 C 1.47441 * 111.00085 * 175.21655 * 7 6 5 12 12 H 1.08997 * 109.89119 * 242.66145 * 11 7 6 13 13 C 1.52992 * 109.89107 * 3.85428 * 11 7 6 14 14 N 1.46502 * 109.47546 * 183.06642 * 13 11 7 15 15 C 1.34769 * 120.00253 * 185.22947 * 14 13 11 16 16 O 1.21286 * 120.00012 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00212 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47387 * 180.02562 * 17 15 14 19 19 C 1.76196 * 99.99937 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00045 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00184 * 179.97438 * 19 18 17 22 22 N 1.31637 * 119.99311 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00273 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46785 * 90.00260 * 23 21 19 25 25 H 1.48497 * 109.47294 * 210.00087 * 23 21 19 26 26 H 1.48498 * 109.47304 * 330.00475 * 23 21 19 27 27 O 1.34360 * 126.28459 * 180.28661 * 2 1 3 28 28 H 1.08998 * 109.47502 * 89.97364 * 1 2 3 29 29 H 1.09002 * 109.47113 * 209.97570 * 1 2 3 30 30 H 1.09003 * 109.47223 * 329.97792 * 1 2 3 31 31 H 1.09005 * 109.47584 * 210.02214 * 6 5 4 32 32 H 1.08996 * 109.47094 * 330.02383 * 6 5 4 33 33 H 1.09008 * 110.37018 * 332.46246 * 8 7 6 34 34 H 1.08995 * 110.37428 * 94.79933 * 8 7 6 35 35 H 1.08995 * 110.99348 * 278.97274 * 9 8 7 36 36 H 1.09005 * 111.02035 * 155.17167 * 9 8 7 37 37 H 1.08993 * 110.70787 * 205.96221 * 10 9 8 38 38 H 1.09009 * 110.70407 * 82.72996 * 10 9 8 39 39 H 1.09003 * 109.47260 * 303.06723 * 13 11 7 40 40 H 1.09005 * 109.47435 * 63.06774 * 13 11 7 41 41 H 0.97003 * 119.99682 * 5.23679 * 14 13 11 42 42 H 1.09003 * 109.46658 * 299.99934 * 17 15 14 43 43 H 1.08994 * 109.47069 * 59.99923 * 17 15 14 44 44 H 0.97009 * 119.99207 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5089 0.6762 -0.0005 5 6 3.5654 -0.6253 -0.0004 6 6 4.8176 -1.4637 -0.0014 7 7 5.2255 -1.7364 1.3833 8 6 5.5875 -0.4864 2.0849 9 6 6.7245 -0.8925 3.0555 10 6 7.5021 -1.9342 2.2087 11 6 6.3827 -2.6492 1.4232 12 1 6.1077 -3.5746 1.9292 13 6 6.8566 -2.9514 0.0003 14 7 7.9588 -3.9154 0.0470 15 6 8.6083 -4.2518 -1.0850 16 8 8.2806 -3.7562 -2.1423 17 6 9.7417 -5.2439 -1.0370 18 16 10.4045 -5.4838 -2.7041 19 6 11.6766 -6.6541 -2.3621 20 1 11.8374 -6.9967 -1.3506 21 6 12.4713 -7.1365 -3.3928 22 7 12.2748 -6.7192 -4.6258 23 14 13.8203 -8.3766 -3.0301 24 1 13.2716 -9.7519 -3.1428 25 1 14.9268 -8.2037 -4.0052 26 1 14.3348 -8.1601 -1.6540 27 8 2.3021 -1.0830 -0.0054 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3634 0.8898 0.5142 31 1 4.6241 -2.4054 -0.5152 32 1 5.6143 -0.9262 -0.5157 33 1 5.9439 0.2586 1.3734 34 1 4.7326 -0.1024 2.6414 35 1 6.3216 -1.3474 3.9603 36 1 7.3553 -0.0374 3.2983 37 1 8.0306 -2.6371 2.8526 38 1 8.1942 -1.4382 1.5280 39 1 6.0318 -3.3703 -0.5762 40 1 7.1992 -2.0306 -0.4719 41 1 8.2211 -4.3116 0.8927 42 1 10.5285 -4.8653 -0.3846 43 1 9.3758 -6.1952 -0.6508 44 1 12.8305 -7.0561 -5.3460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714604907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = 13.626456 kcal Electronic energy + Delta-G solvation = -26423.334165 eV Core-core repulsion = 22504.342227 eV Total energy + Delta-G solvation = -3918.991938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.52430 -40.36324 -38.84381 -36.45479 -34.68077 -34.09409 -32.45245 -32.40836 -30.83690 -29.08277 -28.65976 -26.44883 -25.59333 -24.98395 -23.12199 -22.84756 -21.61454 -20.49167 -20.20607 -17.96738 -17.79105 -17.47478 -16.93259 -16.51223 -16.06545 -15.52539 -15.34695 -15.29325 -14.86458 -14.81772 -14.44662 -14.02404 -13.83722 -13.75188 -13.35725 -13.21481 -13.16247 -12.83223 -12.67708 -12.59013 -12.41771 -12.10725 -11.94316 -11.89755 -11.55749 -11.31018 -11.20780 -11.08370 -11.07202 -11.04884 -10.78767 -9.88031 -9.84685 -9.52437 -9.10163 -9.02610 -8.89201 -8.27160 -6.53234 -6.24210 -3.95100 0.79280 1.88988 2.03997 2.91094 3.01548 3.20571 3.22900 3.27947 3.33603 3.51397 3.74085 4.00910 4.08220 4.17933 4.23727 4.35810 4.43527 4.73331 4.77801 4.79016 4.84725 4.95417 5.02314 5.04198 5.10287 5.11115 5.13946 5.22003 5.25807 5.39591 5.43224 5.46761 5.52972 5.59110 5.63374 5.72308 5.84304 5.87896 6.09343 6.27314 6.33427 6.51599 7.56851 7.59717 7.98626 8.32633 8.52161 9.21185 10.83178 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.001931 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.050514 B =14499.612818 C =15393.678485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.160 3.840 3 N -0.290 5.290 4 N -0.282 5.282 5 C 0.177 3.823 6 C 0.131 3.869 7 N -0.515 5.515 8 C 0.037 3.963 9 C -0.127 4.127 10 C -0.140 4.140 11 C 0.066 3.934 12 H 0.102 0.898 13 C 0.099 3.901 14 N -0.735 5.735 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 O -0.217 6.217 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.358 11.330 16.870 28.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.051 4.051 3 N -0.138 5.138 4 N -0.129 5.129 5 C -0.034 4.034 6 C 0.002 3.998 7 N -0.241 5.241 8 C -0.090 4.090 9 C -0.165 4.165 10 C -0.178 4.178 11 C -0.042 4.042 12 H 0.120 0.880 13 C -0.026 4.026 14 N -0.390 5.390 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 O -0.096 6.096 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.234 0.766 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.921 13.160 15.131 28.979 hybrid contribution 1.593 -2.379 1.394 3.184 sum -19.328 10.781 16.525 27.620 Atomic orbital electron populations 1.20360 0.80194 1.05723 1.05314 1.28047 0.97916 0.79700 0.99452 1.74397 0.96043 1.25637 1.17731 1.74398 1.12348 1.09149 1.17009 1.27735 0.85134 0.91296 0.99245 1.20904 0.87547 0.98841 0.92482 1.63815 1.34632 1.13409 1.12237 1.23188 0.98295 0.90791 0.96697 1.22687 0.96498 0.99115 0.98227 1.22928 0.97351 0.98542 0.98983 1.22703 0.88960 0.97224 0.95308 0.88045 1.21999 0.90417 0.93879 0.96296 1.45877 1.35942 1.46444 1.10766 1.20337 0.82690 0.81932 0.83166 1.90711 1.65661 1.53233 1.29438 1.23526 0.98422 0.99937 1.08499 1.85412 1.40878 1.57024 1.00045 1.22862 1.19612 1.29029 0.96921 0.90900 1.25000 0.97439 0.96729 0.94441 1.70024 1.38746 1.41961 0.99516 0.86160 0.80402 0.80617 0.78273 1.20263 1.20739 1.19697 1.84799 1.17466 1.38150 1.69151 0.88257 0.88805 0.87546 0.86431 0.88712 0.92064 0.90284 0.90487 0.90287 0.89954 0.90423 0.90972 0.91009 0.76644 0.89163 0.89136 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.00 0.38 0.15 16 2 C 0.16 1.49 8.48 -12.94 -0.11 1.38 16 3 N -0.29 -3.52 12.22 32.55 0.40 -3.13 16 4 N -0.28 -3.57 12.12 32.55 0.39 -3.17 16 5 C 0.18 1.94 7.30 -12.94 -0.09 1.85 16 6 C 0.13 1.19 4.30 -4.98 -0.02 1.17 16 7 N -0.52 -4.41 5.19 -224.79 -1.17 -5.57 16 8 C 0.04 0.31 5.92 -2.30 -0.01 0.30 16 9 C -0.13 -0.85 7.08 -24.59 -0.17 -1.02 16 10 C -0.14 -0.97 6.13 -24.91 -0.15 -1.12 16 11 C 0.07 0.51 3.50 -66.73 -0.23 0.28 16 12 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 13 C 0.10 1.01 3.75 -4.04 -0.02 1.00 16 14 N -0.73 -8.71 5.34 -60.29 -0.32 -9.03 16 15 C 0.53 9.36 7.85 -10.99 -0.09 9.27 16 16 O -0.52 -11.24 15.86 5.55 0.09 -11.15 16 17 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 23 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 O -0.22 -2.29 10.87 5.39 0.06 -2.23 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 0.97 6.32 -51.93 -0.33 0.64 16 32 H 0.10 0.86 6.76 -51.93 -0.35 0.51 16 33 H 0.06 0.56 7.71 -51.92 -0.40 0.16 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.62 7.80 -51.92 -0.40 0.22 16 39 H 0.07 0.76 6.26 -51.93 -0.32 0.44 16 40 H 0.07 0.81 6.96 -51.93 -0.36 0.45 16 41 H 0.40 3.55 8.36 -40.82 -0.34 3.21 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -36.65 379.94 -7.71 -44.36 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.28 Total: -0.65 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -0.10 Total: -2.28 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.04 Total: -46.12 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.15 Total: -13.39 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.65 -7.71 -44.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714604907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.989 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds