Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30276 * 126.28503 * 2 1 4 4 N 1.28672 * 109.37911 * 179.72977 * 3 2 1 5 5 C 1.30273 * 109.38275 * 0.44190 * 4 3 2 6 6 C 1.50696 * 126.28520 * 179.83329 * 5 4 3 7 7 H 1.09003 * 109.47800 * 164.68695 * 6 5 4 8 8 C 1.53003 * 109.46686 * 284.68470 * 6 5 4 9 9 N 1.46903 * 109.47197 * 44.68196 * 6 5 4 10 10 C 1.46902 * 110.99831 * 155.00344 * 9 6 5 11 11 C 1.50699 * 109.46833 * 179.97438 * 10 9 6 12 12 C 1.31005 * 119.99776 * 125.00436 * 11 10 9 13 13 C 1.50702 * 119.99932 * 180.27660 * 12 11 10 14 14 N 1.46500 * 109.47089 * 124.72256 * 13 12 11 15 15 C 1.34774 * 119.99908 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00043 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47098 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00110 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99468 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00279 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00290 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47338 * 89.99566 * 23 21 19 25 25 H 1.48501 * 109.47424 * 209.99828 * 23 21 19 26 26 H 1.48503 * 109.46791 * 329.99661 * 23 21 19 27 27 O 1.34366 * 126.27787 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47686 * 270.00598 * 1 2 3 29 29 H 1.09006 * 109.46762 * 30.00574 * 1 2 3 30 30 H 1.08998 * 109.47192 * 150.00098 * 1 2 3 31 31 H 1.09000 * 109.47207 * 59.99955 * 8 6 5 32 32 H 1.09004 * 109.47141 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47439 * 299.99659 * 8 6 5 34 34 H 1.00899 * 111.00004 * 278.95817 * 9 6 5 35 35 H 1.09005 * 109.47160 * 60.00360 * 10 9 6 36 36 H 1.08994 * 109.46952 * 300.00282 * 10 9 6 37 37 H 1.08002 * 120.00511 * 305.00374 * 11 10 9 38 38 H 1.08002 * 119.99708 * 359.97438 * 12 11 10 39 39 H 1.09002 * 109.47005 * 244.72313 * 13 12 11 40 40 H 1.08999 * 109.47073 * 4.72010 * 13 12 11 41 41 H 0.96998 * 119.99957 * 359.97438 * 14 13 12 42 42 H 1.09004 * 109.46954 * 299.99342 * 17 15 14 43 43 H 1.08999 * 109.47311 * 59.99782 * 17 15 14 44 44 H 0.97002 * 120.00228 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6255 0.0001 6 6 4.8175 -1.4640 0.0003 7 1 4.5672 -2.4910 0.2663 8 6 5.4491 -1.4376 -1.3931 9 7 5.7693 -0.9226 0.9796 10 6 6.6931 -1.9645 1.4475 11 6 7.6524 -1.3729 2.4479 12 6 7.7696 -1.9073 3.6382 13 6 8.7243 -1.3119 4.6408 14 7 8.0009 -0.9924 5.8740 15 6 8.6561 -0.4459 6.9173 16 8 9.8448 -0.2190 6.8353 17 6 7.9121 -0.1178 8.1861 18 16 9.0588 0.5974 9.3901 19 6 7.9552 0.8774 10.7349 20 1 6.9119 0.6144 10.6409 21 6 8.4264 1.4367 11.9145 22 7 9.6979 1.7576 12.0288 23 14 7.2566 1.7328 13.3404 24 1 7.2260 0.5318 14.2133 25 1 7.7206 2.9043 14.1263 26 1 5.8931 1.9978 12.8151 27 8 2.3020 -1.0832 0.0005 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 5.6995 -0.4107 -1.6591 32 1 6.3551 -2.0437 -1.3929 33 1 4.7429 -1.8394 -2.1198 34 1 6.2740 -0.1370 0.5972 35 1 7.2517 -2.3621 0.6002 36 1 6.1263 -2.7678 1.9181 37 1 8.2433 -0.5084 2.1836 38 1 7.1784 -2.7716 3.9027 39 1 9.5157 -2.0290 4.8591 40 1 9.1617 -0.4020 4.2300 41 1 7.0502 -1.1736 5.9394 42 1 7.1202 0.5988 7.9680 43 1 7.4755 -1.0280 8.5970 44 1 10.0273 2.1482 12.8534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715789157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = 16.790387 kcal Electronic energy + Delta-G solvation = -24891.073681 eV Core-core repulsion = 20972.218941 eV Total energy + Delta-G solvation = -3918.854740 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.58358 -39.16031 -38.25989 -36.52060 -35.89960 -33.87463 -32.84864 -32.40216 -30.94798 -29.31909 -28.43168 -26.80003 -25.45965 -25.02872 -23.48520 -22.81121 -21.87205 -20.56803 -19.88771 -17.92014 -17.82078 -17.65911 -16.51458 -16.30999 -16.03672 -15.88209 -15.41121 -15.13640 -14.88462 -14.77944 -14.23661 -14.02437 -13.88612 -13.77805 -13.53672 -13.41090 -13.05570 -12.93749 -12.72146 -12.63103 -12.51116 -12.36705 -12.28789 -12.14003 -11.71671 -11.43134 -11.24766 -11.04111 -10.99790 -10.74154 -10.00207 -9.82488 -9.77149 -9.32119 -9.07657 -9.03997 -8.80179 -8.20643 -6.47024 -6.19069 -3.89384 0.74409 1.58260 1.84282 2.04804 3.12739 3.13532 3.24436 3.30638 3.33299 3.37336 3.62710 3.83823 3.98573 4.12449 4.23021 4.24629 4.38837 4.62297 4.68122 4.73941 4.76649 4.81311 4.87899 5.05544 5.07452 5.08296 5.11684 5.16035 5.21210 5.27676 5.34015 5.42108 5.50294 5.60759 5.82673 5.93071 6.17848 6.18484 6.26527 6.38524 6.66569 6.68840 7.62278 7.75087 7.96249 8.37958 8.64499 9.26223 10.88372 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.001652 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.606439 B =16945.992461 C =18868.127235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.158 3.842 3 N -0.288 5.288 4 N -0.270 5.270 5 C 0.174 3.826 6 C 0.184 3.816 7 H 0.110 0.890 8 C -0.180 4.180 9 N -0.674 5.674 10 C 0.091 3.909 11 C -0.141 4.141 12 C -0.152 4.152 13 C 0.150 3.850 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 O -0.227 6.227 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.359 0.641 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.977 -11.439 -30.637 36.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.053 4.053 3 N -0.136 5.136 4 N -0.116 5.116 5 C -0.039 4.039 6 C 0.072 3.928 7 H 0.128 0.872 8 C -0.239 4.239 9 N -0.307 5.307 10 C -0.037 4.037 11 C -0.161 4.161 12 C -0.172 4.172 13 C 0.026 3.974 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 O -0.106 6.106 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.180 0.820 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.886 -9.807 -30.119 34.585 hybrid contribution -2.453 -1.440 0.322 2.862 sum -16.339 -11.247 -29.797 35.795 Atomic orbital electron populations 1.20363 0.80153 1.05647 1.05417 1.28053 0.97843 0.79632 0.99737 1.74450 0.96158 1.25583 1.17390 1.74341 1.11928 1.09123 1.16185 1.27807 0.84849 0.91687 0.99522 1.19688 0.84627 0.95701 0.92779 0.87202 1.22517 1.01840 1.04116 0.95470 1.60129 1.20371 1.10350 1.39857 1.21078 0.92361 0.93449 0.96769 1.22680 0.98162 1.00048 0.95168 1.22925 0.99530 1.00185 0.94533 1.20258 0.93669 0.99892 0.83586 1.45974 1.12824 1.66101 1.14104 1.20326 0.87654 0.76177 0.84076 1.90701 1.15171 1.51366 1.82078 1.23531 1.04603 1.04828 0.97409 1.85383 1.11556 1.79178 1.07278 1.22873 0.96895 1.48244 1.00323 0.90924 1.24992 0.95664 0.94785 0.98178 1.70020 1.13298 1.39925 1.27057 0.86165 0.80332 0.77974 0.81011 1.20291 1.20755 1.19695 1.84751 1.17466 1.38519 1.69907 0.88169 0.87493 0.88941 0.90788 0.90286 0.91186 0.82019 0.93401 0.90059 0.86579 0.86630 0.90786 0.91210 0.76684 0.89176 0.89216 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 36.00 0.38 0.19 16 2 C 0.16 1.34 8.48 -12.94 -0.11 1.23 16 3 N -0.29 -3.37 12.22 32.55 0.40 -2.97 16 4 N -0.27 -3.19 12.22 32.55 0.40 -2.79 16 5 C 0.17 1.59 7.32 -12.94 -0.09 1.50 16 6 C 0.18 1.06 3.13 -68.86 -0.22 0.85 16 7 H 0.11 0.47 7.80 -51.93 -0.40 0.06 16 8 C -0.18 -0.70 9.14 37.16 0.34 -0.36 16 9 N -0.67 -4.48 6.22 -109.22 -0.68 -5.16 16 10 C 0.09 0.48 5.92 -4.98 -0.03 0.45 16 11 C -0.14 -1.00 9.38 -36.03 -0.34 -1.34 16 12 C -0.15 -1.24 9.24 -36.03 -0.33 -1.58 16 13 C 0.15 1.74 6.11 -5.19 -0.03 1.71 16 14 N -0.74 -10.14 5.55 -61.47 -0.34 -10.48 16 15 C 0.53 10.19 7.85 -10.99 -0.09 10.10 16 16 O -0.52 -12.03 15.86 5.55 0.09 -11.94 16 17 C -0.15 -3.17 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 23 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 O -0.23 -2.01 10.87 5.36 0.06 -1.95 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.36 8.13 -51.93 -0.42 -0.07 16 32 H 0.08 0.19 7.45 -51.93 -0.39 -0.20 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.36 2.35 8.46 -39.29 -0.33 2.02 16 35 H 0.05 0.18 7.44 -51.93 -0.39 -0.21 16 36 H 0.08 0.40 7.71 -51.93 -0.40 0.00 16 37 H 0.12 0.83 7.84 -52.49 -0.41 0.42 16 38 H 0.12 0.80 7.84 -52.49 -0.41 0.39 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.87 7.79 -51.93 -0.40 0.47 16 41 H 0.40 4.44 8.46 -40.82 -0.35 4.10 16 42 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 397.88 15.07 6.00 6.00 Total: -1.00 -38.47 397.88 -7.09 -45.56 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.41 Total: 0.05 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.10 Total: -3.36 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.51 Total: -47.11 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.15 Total: -13.90 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.47 -7.09 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715789157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.349 kcal (2) G-P(sol) polarization free energy of solvation -38.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds