Wall clock time and date at job start Sat Apr 11 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30276 * 126.28503 * 2 1 4 4 N 1.28672 * 109.37911 * 179.72977 * 3 2 1 5 5 C 1.30273 * 109.38275 * 0.44190 * 4 3 2 6 6 C 1.50696 * 126.28520 * 179.83329 * 5 4 3 7 7 H 1.09003 * 109.47800 * 164.68695 * 6 5 4 8 8 C 1.53003 * 109.46686 * 284.68470 * 6 5 4 9 9 N 1.46903 * 109.47197 * 44.68196 * 6 5 4 10 10 C 1.46902 * 110.99831 * 155.00344 * 9 6 5 11 11 C 1.50699 * 109.46833 * 179.97438 * 10 9 6 12 12 C 1.31005 * 119.99776 * 125.00436 * 11 10 9 13 13 C 1.50702 * 119.99932 * 180.27660 * 12 11 10 14 14 N 1.46500 * 109.47089 * 124.72256 * 13 12 11 15 15 C 1.34774 * 119.99908 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00043 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47098 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00110 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99468 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00279 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00290 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47338 * 89.99566 * 23 21 19 25 25 H 1.48501 * 109.47424 * 209.99828 * 23 21 19 26 26 H 1.48503 * 109.46791 * 329.99661 * 23 21 19 27 27 O 1.34366 * 126.27787 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47686 * 270.00598 * 1 2 3 29 29 H 1.09006 * 109.46762 * 30.00574 * 1 2 3 30 30 H 1.08998 * 109.47192 * 150.00098 * 1 2 3 31 31 H 1.09000 * 109.47207 * 59.99955 * 8 6 5 32 32 H 1.09004 * 109.47141 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47439 * 299.99659 * 8 6 5 34 34 H 1.00899 * 111.00004 * 278.95817 * 9 6 5 35 35 H 1.09005 * 109.47160 * 60.00360 * 10 9 6 36 36 H 1.08994 * 109.46952 * 300.00282 * 10 9 6 37 37 H 1.08002 * 120.00511 * 305.00374 * 11 10 9 38 38 H 1.08002 * 119.99708 * 359.97438 * 12 11 10 39 39 H 1.09002 * 109.47005 * 244.72313 * 13 12 11 40 40 H 1.08999 * 109.47073 * 4.72010 * 13 12 11 41 41 H 0.96998 * 119.99957 * 359.97438 * 14 13 12 42 42 H 1.09004 * 109.46954 * 299.99342 * 17 15 14 43 43 H 1.08999 * 109.47311 * 59.99782 * 17 15 14 44 44 H 0.97002 * 120.00228 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0057 5 6 3.5654 -0.6255 0.0001 6 6 4.8175 -1.4640 0.0003 7 1 4.5672 -2.4910 0.2663 8 6 5.4491 -1.4376 -1.3931 9 7 5.7693 -0.9226 0.9796 10 6 6.6931 -1.9645 1.4475 11 6 7.6524 -1.3729 2.4479 12 6 7.7696 -1.9073 3.6382 13 6 8.7243 -1.3119 4.6408 14 7 8.0009 -0.9924 5.8740 15 6 8.6561 -0.4459 6.9173 16 8 9.8448 -0.2190 6.8353 17 6 7.9121 -0.1178 8.1861 18 16 9.0588 0.5974 9.3901 19 6 7.9552 0.8774 10.7349 20 1 6.9119 0.6144 10.6409 21 6 8.4264 1.4367 11.9145 22 7 9.6979 1.7576 12.0288 23 14 7.2566 1.7328 13.3404 24 1 7.2260 0.5318 14.2133 25 1 7.7206 2.9043 14.1263 26 1 5.8931 1.9978 12.8151 27 8 2.3020 -1.0832 0.0005 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 5.6995 -0.4107 -1.6591 32 1 6.3551 -2.0437 -1.3929 33 1 4.7429 -1.8394 -2.1198 34 1 6.2740 -0.1370 0.5972 35 1 7.2517 -2.3621 0.6002 36 1 6.1263 -2.7678 1.9181 37 1 8.2433 -0.5084 2.1836 38 1 7.1784 -2.7716 3.9027 39 1 9.5157 -2.0290 4.8591 40 1 9.1617 -0.4020 4.2300 41 1 7.0502 -1.1736 5.9394 42 1 7.1202 0.5988 7.9680 43 1 7.4755 -1.0280 8.5970 44 1 10.0273 2.1482 12.8534 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715789157.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:41 Heat of formation + Delta-G solvation = -16.891760 kcal Electronic energy + Delta-G solvation = -24892.534249 eV Core-core repulsion = 20972.218941 eV Total energy + Delta-G solvation = -3920.315307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.24021 -40.60964 -38.75268 -37.20736 -36.82318 -34.77315 -34.58404 -33.48545 -31.75653 -30.55488 -28.90145 -27.84703 -27.41535 -25.66053 -24.18105 -23.42366 -22.36972 -21.85613 -20.74255 -19.78203 -18.54942 -18.28415 -17.81780 -17.41018 -16.95437 -16.88104 -16.54060 -16.41042 -15.87266 -15.77796 -15.39473 -15.09001 -14.82059 -14.52103 -14.38533 -14.22587 -13.85106 -13.70172 -13.63392 -13.42222 -13.24188 -13.17032 -13.05044 -12.93426 -12.88772 -12.85218 -12.63107 -12.60544 -12.05870 -11.87311 -11.73143 -11.14538 -11.09847 -10.59566 -10.37992 -10.28303 -10.03301 -9.49015 -8.67281 -8.34896 -6.13206 0.13959 0.94562 1.23042 1.31891 1.36337 1.42369 1.48943 1.59641 1.60317 2.26899 2.45331 2.85085 2.99061 3.15617 3.32750 3.50476 3.70547 3.75970 3.89437 3.99145 4.11099 4.18457 4.28723 4.36159 4.40488 4.42606 4.50071 4.51436 4.55766 4.57528 4.67940 4.72990 4.75129 4.78244 4.88082 5.04857 5.12314 5.37892 5.41573 5.66110 5.73642 5.86002 6.19609 6.22138 6.50420 7.06197 7.23112 7.28839 8.74384 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.001652 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.606439 B =16945.992461 C =18868.127235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.165 3.835 3 N -0.336 5.336 4 N -0.310 5.310 5 C 0.174 3.826 6 C 0.186 3.814 7 H 0.131 0.869 8 C -0.173 4.173 9 N -0.690 5.690 10 C 0.095 3.905 11 C -0.128 4.128 12 C -0.160 4.160 13 C 0.148 3.852 14 N -0.710 5.710 15 C 0.532 3.468 16 O -0.567 6.567 17 C -0.130 4.130 18 S -0.151 6.151 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.259 1.259 27 O -0.231 6.231 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.357 0.643 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.416 0.584 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.743 -13.308 -31.580 39.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 N -0.182 5.182 4 N -0.155 5.155 5 C -0.039 4.039 6 C 0.074 3.926 7 H 0.148 0.852 8 C -0.232 4.232 9 N -0.324 5.324 10 C -0.032 4.032 11 C -0.147 4.147 12 C -0.179 4.179 13 C 0.025 3.975 14 N -0.364 5.364 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.076 5.924 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.183 1.183 27 O -0.111 6.111 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.177 0.823 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.696 -11.691 -31.107 37.189 hybrid contribution -1.644 -0.904 0.445 1.928 sum -18.340 -12.595 -30.662 37.883 Atomic orbital electron populations 1.20694 0.76755 1.07332 1.06755 1.29025 0.99382 0.78894 0.97312 1.74364 0.96689 1.27331 1.19850 1.74243 1.12489 1.10706 1.18026 1.28530 0.85817 0.91451 0.98093 1.19922 0.83241 0.95796 0.93601 0.85162 1.22470 1.02616 1.03742 0.94357 1.60073 1.20842 1.10896 1.40563 1.21096 0.92047 0.93049 0.97001 1.22861 0.97500 0.99213 0.95143 1.22728 0.99885 1.01342 0.93967 1.20364 0.94448 0.99489 0.83178 1.45762 1.13563 1.63681 1.13351 1.20089 0.86958 0.76466 0.84696 1.90688 1.17114 1.53843 1.82921 1.23375 1.02981 1.05520 0.96213 1.85558 1.15917 1.80576 1.10369 1.23208 0.97187 1.48423 1.00684 0.89937 1.26143 0.97541 0.94151 1.01382 1.70185 1.15617 1.40858 1.28066 0.84939 0.78029 0.78131 0.76787 1.19178 1.20261 1.18283 1.84776 1.17518 1.38649 1.70122 0.86756 0.86504 0.86498 0.92133 0.88185 0.90755 0.82318 0.91052 0.88988 0.87062 0.84695 0.91449 0.92382 0.74720 0.87448 0.87056 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 71.23 0.75 0.48 16 2 C 0.17 2.66 8.48 88.34 0.75 3.41 16 3 N -0.34 -7.94 12.22 -165.50 -2.02 -9.97 16 4 N -0.31 -7.41 12.22 -165.50 -2.02 -9.43 16 5 C 0.17 3.05 7.32 88.34 0.65 3.70 16 6 C 0.19 1.78 3.13 44.17 0.14 1.91 16 7 H 0.13 0.70 7.80 -2.39 -0.02 0.68 16 8 C -0.17 -1.00 9.14 71.98 0.66 -0.34 16 9 N -0.69 -7.85 6.22 -499.45 -3.10 -10.95 16 10 C 0.10 0.71 5.92 85.56 0.51 1.21 16 11 C -0.13 -1.52 9.38 25.64 0.24 -1.28 16 12 C -0.16 -2.24 9.24 25.64 0.24 -2.00 16 13 C 0.15 3.31 6.11 85.63 0.52 3.83 16 14 N -0.71 -18.58 5.55 -466.78 -2.59 -21.17 16 15 C 0.53 20.28 7.85 87.66 0.69 20.96 16 16 O -0.57 -27.00 15.86 -3.05 -0.05 -27.05 16 17 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 18 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 19 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 20 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 21 C 0.01 0.72 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 23 Si 1.00 44.19 29.55 68.60 2.03 46.22 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 O -0.23 -3.81 10.87 -3.75 -0.04 -3.86 16 28 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 32 H 0.10 0.17 7.45 -2.38 -0.02 0.15 16 33 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.36 4.28 8.46 -89.69 -0.76 3.52 16 35 H 0.07 0.25 7.44 -2.38 -0.02 0.23 16 36 H 0.09 0.54 7.71 -2.39 -0.02 0.52 16 37 H 0.11 1.44 7.84 -2.91 -0.02 1.42 16 38 H 0.14 1.41 7.84 -2.91 -0.02 1.39 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.45 7.79 -2.39 -0.02 1.43 16 41 H 0.42 8.20 8.46 -92.71 -0.78 7.42 16 42 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 43 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 44 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -87.57 397.88 -2.50 -90.07 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.51 Total: 15.15 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 6.69 Total: -2.91 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -9.45 Total: -107.87 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.09 Total: -30.90 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -87.57 -2.50 -90.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715789157.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.178 kcal (2) G-P(sol) polarization free energy of solvation -87.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds