Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31133 * 126.55142 * 2 1 4 4 C 1.34485 * 105.61659 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.28818 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47515 * 344.97836 * 5 4 3 7 7 C 1.53005 * 109.47018 * 104.97736 * 5 4 3 8 8 N 1.46904 * 109.47256 * 224.97334 * 5 4 3 9 9 C 1.46900 * 110.99864 * 155.00084 * 8 5 4 10 10 C 1.50705 * 109.46777 * 179.97438 * 9 8 5 11 11 C 1.31004 * 119.99795 * 127.15583 * 10 9 8 12 12 C 1.50704 * 119.99879 * 7.55926 * 11 10 9 13 13 N 1.46494 * 109.47186 * 127.00509 * 12 11 10 14 14 C 1.34775 * 120.00079 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00113 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99861 * 180.02562 * 14 13 12 17 17 S 1.81000 * 109.46906 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99946 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00103 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00166 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00202 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00030 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46826 * 90.00030 * 22 20 18 24 24 H 1.48499 * 109.47188 * 209.99918 * 22 20 18 25 25 H 1.48502 * 109.46983 * 330.00226 * 22 20 18 26 26 N 1.29947 * 107.42547 * 359.97438 * 4 3 2 27 27 O 1.21299 * 110.25153 * 0.02562 * 26 4 3 28 28 H 1.09002 * 109.46666 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47134 * 299.97032 * 1 2 3 30 30 H 1.08994 * 109.47170 * 59.97333 * 1 2 3 31 31 H 1.08992 * 109.47751 * 59.99873 * 7 5 4 32 32 H 1.09004 * 109.47280 * 180.02562 * 7 5 4 33 33 H 1.09008 * 109.46940 * 299.99753 * 7 5 4 34 34 H 1.00907 * 110.99685 * 278.95479 * 8 5 4 35 35 H 1.08998 * 109.47116 * 299.99801 * 9 8 5 36 36 H 1.09003 * 109.46966 * 60.00228 * 9 8 5 37 37 H 1.07999 * 120.00141 * 307.15454 * 10 9 8 38 38 H 1.07999 * 119.99976 * 187.55760 * 11 10 9 39 39 H 1.09000 * 109.46732 * 247.00449 * 12 11 10 40 40 H 1.09003 * 109.46974 * 7.00460 * 12 11 10 41 41 H 0.97003 * 119.99845 * 359.97438 * 13 12 11 42 42 H 1.09000 * 109.47147 * 299.99641 * 16 14 13 43 43 H 1.08994 * 109.47401 * 59.99940 * 16 14 13 44 44 H 0.97000 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8111 1.3887 -0.0003 6 1 4.5793 2.4201 -0.2659 7 6 5.4420 1.3504 1.3931 8 7 5.7531 0.8307 -0.9797 9 6 6.6955 1.8561 -1.4472 10 6 7.6441 1.2477 -2.4477 11 6 7.8025 1.8048 -3.6228 12 6 7.1713 3.1419 -3.9140 13 7 8.1928 4.0658 -4.4132 14 6 7.8563 5.3288 -4.7419 15 8 6.7079 5.7006 -4.6240 16 6 8.9071 6.2790 -5.2559 17 16 8.1490 7.8850 -5.6056 18 6 9.5611 8.7728 -6.1732 19 1 10.5237 8.2852 -6.2172 20 6 9.4362 10.0985 -6.5648 21 7 10.4910 10.7616 -6.9893 22 14 7.7709 10.9418 -6.4893 23 1 7.5980 11.5776 -5.1585 24 1 7.6936 11.9803 -7.5479 25 1 6.6976 9.9377 -6.7014 26 7 3.4645 -0.7241 -0.0003 27 8 2.3030 -1.0736 -0.0002 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5134 0.8902 30 1 -0.3633 0.5142 -0.8897 31 1 5.6739 0.3191 1.6588 32 1 6.3583 1.9409 1.3935 33 1 4.7431 1.7645 2.1199 34 1 6.2437 0.0360 -0.5975 35 1 6.1433 2.6697 -1.9176 36 1 7.2611 2.2432 -0.5996 37 1 8.1934 0.3525 -2.1960 38 1 8.3855 1.3058 -4.3828 39 1 6.3927 3.0198 -4.6670 40 1 6.7334 3.5437 -3.0003 41 1 9.1113 3.7685 -4.5071 42 1 9.6857 6.4014 -4.5031 43 1 9.3449 5.8769 -6.1695 44 1 10.4036 11.6880 -7.2633 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715794136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = 53.347750 kcal Electronic energy + Delta-G solvation = -25299.956703 eV Core-core repulsion = 21382.687209 eV Total energy + Delta-G solvation = -3917.269494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.90708 -39.37433 -38.35690 -36.50532 -35.55670 -33.93314 -33.00851 -32.43333 -30.51860 -29.41100 -29.22525 -26.42242 -25.65847 -25.31582 -24.38215 -23.61648 -21.04391 -20.50295 -19.34720 -18.48484 -17.97083 -17.63904 -16.67023 -16.42595 -15.97524 -15.81226 -15.43329 -15.07610 -14.92875 -14.86306 -14.51739 -13.95067 -13.83675 -13.71152 -13.65754 -13.52557 -13.19655 -12.86421 -12.78117 -12.68298 -12.54961 -12.33698 -12.03528 -11.92432 -11.71692 -11.35036 -11.26296 -11.02587 -10.99515 -10.60433 -10.23569 -9.91523 -9.80851 -9.44678 -9.04812 -8.99225 -8.78656 -8.49502 -6.91298 -6.28533 -4.00253 0.82050 1.63057 1.90393 2.47364 2.81579 2.98043 3.08440 3.33119 3.40298 3.51365 3.66963 3.73336 3.91191 4.32744 4.33775 4.42592 4.48993 4.67645 4.69092 4.76414 4.77783 4.82826 4.88883 5.00366 5.02197 5.10555 5.22020 5.26859 5.30176 5.35827 5.40322 5.52636 5.55980 5.68521 5.71088 5.77630 6.01947 6.17306 6.32256 6.39828 6.57169 6.81148 7.62263 7.85642 7.94504 8.41960 8.49372 9.17694 10.80649 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.001699 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.029350 B =16475.344720 C =17453.501677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.175 3.825 3 N -0.481 5.481 4 C 0.188 3.812 5 C 0.174 3.826 6 H 0.112 0.888 7 C -0.178 4.178 8 N -0.675 5.675 9 C 0.073 3.927 10 C -0.136 4.136 11 C -0.158 4.158 12 C 0.140 3.860 13 N -0.733 5.733 14 C 0.530 3.470 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.372 5.372 27 O 0.074 5.926 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.349 0.651 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.400 0.600 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.822 -26.946 16.870 34.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 N -0.215 5.215 4 C -0.086 4.086 5 C 0.062 3.938 6 H 0.130 0.870 7 C -0.238 4.238 8 N -0.307 5.307 9 C -0.054 4.054 10 C -0.155 4.155 11 C -0.177 4.177 12 C 0.017 3.983 13 N -0.387 5.387 14 C 0.316 3.684 15 O -0.394 6.394 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.079 5.079 27 O 0.015 5.985 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.168 0.832 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.304 -26.155 16.456 34.483 hybrid contribution 1.772 -0.086 0.453 1.831 sum -13.532 -26.241 16.909 34.023 Atomic orbital electron populations 1.20394 0.80220 1.05579 1.05772 1.28835 0.98931 0.80754 0.95981 1.71859 1.00208 1.29008 1.20463 1.25586 0.94733 0.88149 1.00087 1.19677 0.85532 0.96813 0.91759 0.86985 1.22480 1.01856 1.03082 0.96396 1.60296 1.20538 1.09732 1.40118 1.21308 0.92798 0.94364 0.96945 1.22638 0.97831 1.00593 0.94466 1.22870 1.01473 0.96504 0.96856 1.20430 0.91059 0.86653 1.00161 1.45935 1.12338 1.11728 1.68738 1.20305 0.89687 0.81688 0.76765 1.90704 1.20543 1.76165 1.52024 1.23278 1.00501 0.99354 1.04305 1.84794 1.16947 1.04310 1.85501 1.22321 0.94818 0.99535 1.50252 0.89390 1.24713 0.97155 0.96146 0.93288 1.69940 1.29142 1.10733 1.41881 0.86735 0.85031 0.81171 0.78921 1.19206 1.19941 1.15902 1.74571 0.97051 1.15699 1.20602 1.85307 1.11604 1.35851 1.65750 0.88512 0.87868 0.87765 0.91726 0.90769 0.91214 0.83211 0.88830 0.93547 0.86617 0.86141 0.90808 0.90522 0.76578 0.88482 0.88421 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.15 10.51 36.01 0.38 0.23 16 2 C 0.18 1.34 8.51 -13.05 -0.11 1.23 16 3 N -0.48 -4.98 11.55 -9.87 -0.11 -5.10 16 4 C 0.19 1.97 7.06 -156.38 -1.10 0.86 16 5 C 0.17 1.50 3.13 -68.86 -0.22 1.28 16 6 H 0.11 1.01 7.80 -51.93 -0.40 0.60 16 7 C -0.18 -1.19 9.14 37.16 0.34 -0.85 16 8 N -0.68 -5.68 6.22 -109.21 -0.68 -6.36 16 9 C 0.07 0.59 5.57 -4.97 -0.03 0.56 16 10 C -0.14 -1.04 9.77 -36.02 -0.35 -1.39 16 11 C -0.16 -1.33 9.63 -36.03 -0.35 -1.67 16 12 C 0.14 1.60 5.76 -5.20 -0.03 1.57 16 13 N -0.73 -9.36 5.55 -61.47 -0.34 -9.70 16 14 C 0.53 9.45 7.85 -10.98 -0.09 9.37 16 15 O -0.52 -11.33 15.86 5.55 0.09 -11.24 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.17 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 18 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 22 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 N -0.37 -3.98 12.15 30.90 0.38 -3.60 16 27 O 0.07 0.67 11.31 18.11 0.20 0.88 16 28 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.07 0.42 7.45 -51.93 -0.39 0.03 16 33 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 34 H 0.35 2.60 8.46 -39.29 -0.33 2.27 16 35 H 0.09 0.88 5.21 -51.93 -0.27 0.61 16 36 H 0.05 0.33 7.44 -51.93 -0.39 -0.06 16 37 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.92 5.29 -51.93 -0.27 0.64 16 41 H 0.40 3.94 8.46 -40.82 -0.35 3.59 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -36.82 390.17 -7.84 -44.67 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.21 Total: 1.91 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.12 Total: -3.05 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.02 Total: -50.60 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.29 Total: -10.36 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.82 -7.84 -44.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715794136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.013 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds