Wall clock time and date at job start Sat Apr 11 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 N 1.46898 * 109.47233 * 269.97412 * 6 5 4 8 8 C 1.46906 * 111.00301 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47222 * 180.02562 * 8 7 6 10 10 C 1.53778 * 113.61590 * 274.13667 * 9 8 7 11 11 C 1.53948 * 87.02218 * 220.04955 * 10 9 8 12 12 N 1.46507 * 113.54070 * 270.81161 * 11 10 9 13 13 C 1.34770 * 120.00048 * 252.49841 * 12 11 10 14 14 O 1.21282 * 120.00001 * 359.97438 * 13 12 11 15 15 C 1.50703 * 120.00011 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47102 * 179.97438 * 15 13 12 17 17 C 1.76193 * 99.99971 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38804 * 120.00244 * 179.97438 * 17 16 15 20 20 N 1.31628 * 119.99584 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99979 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46910 * 90.00556 * 21 19 17 23 23 H 1.48501 * 109.47265 * 210.00005 * 21 19 17 24 24 H 1.48497 * 109.47536 * 330.00252 * 21 19 17 25 25 C 1.53780 * 87.11306 * 25.36098 * 11 10 9 26 26 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 27 27 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 28 28 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 29 29 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 30 30 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 31 31 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 32 32 H 1.00893 * 110.99992 * 303.95554 * 7 6 5 33 33 H 1.09001 * 109.46803 * 299.99978 * 8 7 6 34 34 H 1.09000 * 109.46717 * 60.00021 * 8 7 6 35 35 H 1.09001 * 112.84939 * 45.33533 * 9 8 7 36 36 H 1.08998 * 113.61643 * 334.56703 * 10 9 8 37 37 H 1.09003 * 113.61556 * 105.47241 * 10 9 8 38 38 H 1.09003 * 113.74931 * 139.93989 * 11 10 9 39 39 H 0.97001 * 119.99786 * 72.48451 * 12 11 10 40 40 H 1.09003 * 109.46933 * 299.99154 * 15 13 12 41 41 H 1.08996 * 109.47392 * 59.99821 * 15 13 12 42 42 H 0.97001 * 119.99705 * 179.97438 * 20 19 17 43 43 H 1.08996 * 113.61825 * 220.09269 * 25 11 10 44 44 H 1.08999 * 113.61147 * 89.18805 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 7 5.2083 -1.7026 -1.3852 8 6 6.4433 -2.4972 -1.4244 9 6 6.8395 -2.7525 -2.8799 10 6 6.1574 -3.9849 -3.4969 11 6 7.5046 -4.2906 -4.1763 12 7 7.6557 -3.6559 -5.4881 13 6 7.5965 -4.4023 -6.6086 14 8 7.4185 -5.5995 -6.5311 15 6 7.7514 -3.7493 -7.9580 16 16 7.6263 -5.0063 -9.2544 17 6 7.8359 -3.9952 -10.6821 18 1 7.9858 -2.9311 -10.5730 19 6 7.8094 -4.5662 -11.9470 20 7 7.6272 -5.8630 -12.0799 21 14 8.0310 -3.4941 -13.4605 22 1 9.4741 -3.4098 -13.8004 23 1 7.2878 -4.0878 -14.6008 24 1 7.5073 -2.1324 -13.1836 25 6 8.1706 -3.5074 -3.0327 26 7 2.3030 -1.0840 -0.0002 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 5.5843 -0.8849 0.5130 31 1 4.6208 -2.3815 0.5141 32 1 4.4695 -2.1565 -1.9010 33 1 7.2420 -1.9522 -0.9211 34 1 6.2789 -3.4492 -0.9198 35 1 6.7706 -1.8590 -3.5003 36 1 5.8594 -4.7328 -2.7620 37 1 5.3601 -3.7376 -4.1978 38 1 7.7605 -5.3501 -4.1868 39 1 7.7982 -2.6984 -5.5500 40 1 6.9653 -3.0066 -8.0946 41 1 8.7250 -3.2630 -8.0167 42 1 7.6083 -6.2620 -12.9638 43 1 8.9961 -2.8751 -3.3593 44 1 8.4240 -4.1244 -2.1706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717380003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:10 Heat of formation + Delta-G solvation = 21.624869 kcal Electronic energy + Delta-G solvation = -25317.952931 eV Core-core repulsion = 21399.307830 eV Total energy + Delta-G solvation = -3918.645101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.65809 -41.21099 -39.47593 -37.46167 -36.87307 -34.61312 -34.53894 -33.64304 -30.90901 -30.20808 -29.15812 -27.67112 -26.68297 -26.11016 -24.50069 -23.09186 -22.46265 -22.07627 -20.13850 -19.82330 -19.22968 -18.59580 -17.92159 -17.13730 -17.03317 -16.87936 -16.42362 -16.27455 -16.07037 -15.79850 -15.17149 -15.07026 -14.75996 -14.60938 -14.50266 -14.27470 -14.09553 -13.71857 -13.53095 -13.45961 -13.29057 -13.16685 -12.97054 -12.89324 -12.62514 -12.56265 -12.47897 -12.15881 -11.82017 -11.70808 -11.42628 -11.14422 -11.10123 -10.97180 -10.91703 -10.28023 -10.00765 -9.53907 -8.66921 -8.34913 -6.12959 0.05437 1.11281 1.26943 1.42351 1.46971 1.57556 1.60446 1.78549 2.25879 2.30356 2.60925 2.99214 3.02747 3.18369 3.32091 3.59861 3.76187 3.88039 3.92514 3.98893 4.02162 4.27506 4.30833 4.36736 4.49106 4.50745 4.53341 4.54252 4.66067 4.74114 4.81550 4.86166 4.87326 4.94355 4.97673 5.06632 5.12340 5.23002 5.35692 5.41698 5.70254 5.87513 6.19611 6.19743 6.53167 7.06407 7.10391 7.27006 8.74308 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014306 B = 0.001662 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.729255 B =16847.574616 C =18057.088889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.159 3.841 3 N -0.411 5.411 4 O 0.075 5.925 5 C 0.195 3.805 6 C 0.153 3.847 7 N -0.695 5.695 8 C 0.076 3.924 9 C -0.095 4.095 10 C -0.150 4.150 11 C 0.102 3.898 12 N -0.695 5.695 13 C 0.535 3.465 14 O -0.566 6.566 15 C -0.130 4.130 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.259 1.259 25 C -0.119 4.119 26 N -0.502 5.502 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.345 0.655 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.415 0.585 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.271 0.729 43 H 0.084 0.916 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.527 13.274 30.582 33.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 N -0.122 5.122 4 O 0.019 5.981 5 C -0.026 4.026 6 C 0.023 3.977 7 N -0.328 5.328 8 C -0.052 4.052 9 C -0.114 4.114 10 C -0.189 4.189 11 C -0.004 4.004 12 N -0.348 5.348 13 C 0.322 3.678 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.183 1.183 25 C -0.157 4.157 26 N -0.238 5.238 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.153 0.847 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.252 0.748 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.136 12.271 30.572 33.509 hybrid contribution -0.064 1.022 -1.190 1.570 sum -6.200 13.293 29.383 32.840 Atomic orbital electron populations 1.20336 0.80774 1.05779 1.05352 1.26579 1.02072 0.83145 0.99510 1.74657 0.89932 1.24883 1.22736 1.85266 1.21982 1.25444 1.65411 1.29297 0.97289 0.82016 0.93992 1.20595 0.87458 0.97158 0.92526 1.60452 1.08144 1.53030 1.11200 1.22002 0.91170 0.96201 0.95804 1.22507 0.95559 0.96798 0.96500 1.23579 0.96346 0.99087 0.99888 1.22033 0.98457 0.97867 0.81999 1.45442 1.73440 1.11700 1.04229 1.20059 0.75155 0.86673 0.85963 1.90685 1.49557 1.16766 1.87459 1.23379 1.06643 1.03273 0.94840 1.85566 1.95193 1.13539 0.98111 1.23212 1.57421 0.96298 0.92568 0.89927 1.26131 0.93877 0.96812 1.02341 1.70183 1.47409 1.12148 1.24991 0.84951 0.78700 0.78164 0.76151 1.19229 1.20307 1.18254 1.23274 0.96930 0.98414 0.97092 1.71930 1.00526 1.30031 1.21265 0.88330 0.87852 0.88376 0.84673 0.88583 0.83678 0.88408 0.92954 0.88632 0.88283 0.92867 0.90614 0.74754 0.87407 0.87137 0.91989 0.89693 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.16 2.86 8.22 138.46 1.14 4.00 16 3 N -0.41 -8.53 12.16 -60.32 -0.73 -9.26 16 4 O 0.07 1.38 11.31 74.85 0.85 2.23 16 5 C 0.20 2.85 8.03 88.38 0.71 3.56 16 6 C 0.15 1.04 6.31 85.56 0.54 1.58 16 7 N -0.70 -6.30 6.49 -517.94 -3.36 -9.66 16 8 C 0.08 0.47 5.51 86.30 0.48 0.94 16 9 C -0.09 -0.96 3.77 -10.27 -0.04 -1.00 16 10 C -0.15 -2.40 7.44 31.18 0.23 -2.17 16 11 C 0.10 2.06 4.33 45.57 0.20 2.25 16 12 N -0.70 -16.85 5.26 -439.76 -2.31 -19.16 16 13 C 0.54 19.62 7.85 87.66 0.69 20.30 16 14 O -0.57 -26.28 15.46 -3.04 -0.05 -26.33 16 15 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 16 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 17 C -0.55 -31.37 9.50 67.96 0.65 -30.73 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 21 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 25 C -0.12 -1.27 7.39 31.12 0.23 -1.04 16 26 N -0.50 -9.04 11.55 -303.19 -3.50 -12.54 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.35 3.97 8.72 -89.70 -0.78 3.19 16 33 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.05 0.24 7.88 -2.39 -0.02 0.22 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.35 7.92 -2.39 -0.02 1.33 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.96 7.46 -2.39 -0.02 1.95 16 39 H 0.42 7.33 8.70 -92.71 -0.81 6.52 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.11 0.83 8.10 -2.39 -0.02 0.81 16 Total: -1.00 -82.58 391.85 -2.04 -84.62 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.55 Total: 15.51 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.47 Total: -5.69 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -9.62 Total: -106.48 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.80 Total: -24.10 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.58 -2.04 -84.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717380003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.243 kcal (2) G-P(sol) polarization free energy of solvation -82.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds