Wall clock time and date at job start Sat Apr 11 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.30855 * 125.41698 * 2 1 4 4 C 1.33326 * 109.68159 * 179.78110 * 3 2 1 5 5 C 1.36661 * 107.78540 * 0.38293 * 4 3 2 6 6 C 1.46766 * 126.84724 * 179.89307 * 5 4 3 7 7 O 1.21683 * 119.99501 * 359.68542 * 6 5 4 8 8 N 1.34773 * 120.00233 * 179.68218 * 6 5 4 9 9 C 1.46500 * 119.99910 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47297 * 34.99871 * 9 8 6 11 11 C 1.53006 * 109.46998 * 275.00232 * 9 8 6 12 12 C 1.52997 * 109.47007 * 155.00372 * 9 8 6 13 13 C 1.53001 * 109.46997 * 294.99685 * 12 9 8 14 14 N 1.46504 * 109.46748 * 179.97438 * 13 12 9 15 15 C 1.34778 * 119.99455 * 180.02562 * 14 13 12 16 16 O 1.21285 * 120.00180 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99746 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.47326 * 180.02562 * 17 15 14 19 19 C 1.76193 * 100.00487 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99768 * 0.02562 * 19 18 17 21 21 C 1.38791 * 120.00543 * 180.02562 * 19 18 17 22 22 N 1.31640 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00528 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47055 * 89.99693 * 23 21 19 25 25 H 1.48500 * 109.47398 * 210.00119 * 23 21 19 26 26 H 1.48500 * 109.46864 * 329.99954 * 23 21 19 27 27 N 1.34489 * 125.41517 * 180.02562 * 2 1 3 28 28 H 0.97002 * 126.47633 * 359.97438 * 27 2 1 29 29 H 1.08995 * 109.46905 * 269.97720 * 1 2 3 30 30 H 1.09004 * 109.46693 * 29.97636 * 1 2 3 31 31 H 1.08999 * 109.47101 * 149.96943 * 1 2 3 32 32 H 1.07990 * 126.10722 * 180.28114 * 4 3 2 33 33 H 0.96995 * 119.99797 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47002 * 179.97438 * 11 9 8 35 35 H 1.08993 * 109.46955 * 300.00226 * 11 9 8 36 36 H 1.09000 * 109.47050 * 60.00054 * 11 9 8 37 37 H 1.08993 * 109.47322 * 54.99986 * 12 9 8 38 38 H 1.09002 * 109.47196 * 175.00109 * 12 9 8 39 39 H 1.08993 * 109.47331 * 300.00296 * 13 12 9 40 40 H 1.09001 * 109.46791 * 60.00740 * 13 12 9 41 41 H 0.96992 * 120.00104 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.47751 * 300.00332 * 17 15 14 43 43 H 1.09002 * 109.47032 * 60.00402 * 17 15 14 44 44 H 0.97001 * 119.99865 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7048 0.0048 5 6 3.5976 -0.6609 -0.0007 6 6 4.8029 -1.4984 -0.0005 7 8 5.9038 -0.9802 -0.0008 8 7 4.6902 -2.8414 0.0000 9 6 5.8933 -3.6774 -0.0003 10 1 6.6724 -3.1932 0.5885 11 6 6.3831 -3.8656 -1.4376 12 6 5.5664 -5.0418 0.6099 13 6 5.1964 -4.8657 2.0840 14 7 4.8828 -6.1722 2.6681 15 6 4.5269 -6.2625 3.9649 16 8 4.4659 -5.2623 4.6482 17 6 4.2038 -7.6063 4.5657 18 16 3.7647 -7.3979 6.3092 19 6 3.4454 -9.0745 6.7469 20 1 3.5484 -9.8547 6.0072 21 6 3.0614 -9.3926 8.0422 22 7 2.9363 -8.4417 8.9438 23 14 2.7236 -11.1702 8.5064 24 1 3.9777 -11.8029 8.9879 25 1 1.7015 -11.2151 9.5828 26 1 2.2229 -11.9057 7.3174 27 7 2.2865 -1.0960 -0.0005 28 1 1.9850 -2.0180 -0.0006 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3633 -0.8897 -0.5143 32 1 4.3978 1.3720 0.0102 33 1 3.8126 -3.2545 -0.0001 34 1 7.2785 -4.4872 -1.4378 35 1 5.6041 -4.3497 -2.0264 36 1 6.6160 -2.8936 -1.8723 37 1 4.7275 -5.4873 0.0754 38 1 6.4362 -5.6938 0.5291 39 1 6.0353 -4.4202 2.6185 40 1 4.3265 -4.2138 2.1648 41 1 4.9313 -6.9720 2.1216 42 1 3.3648 -8.0513 4.0307 43 1 5.0732 -8.2588 4.4851 44 1 2.6683 -8.6641 9.8492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721003911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:21 Heat of formation + Delta-G solvation = -32.092824 kcal Electronic energy + Delta-G solvation = -25814.315176 eV Core-core repulsion = 21893.340701 eV Total energy + Delta-G solvation = -3920.974475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.62350 -40.03313 -39.19009 -36.92392 -34.59333 -33.33841 -32.49557 -32.46828 -31.61479 -30.16438 -28.22533 -27.80500 -25.53892 -24.18357 -23.14878 -21.79915 -21.07109 -20.81898 -20.37093 -19.07541 -17.88912 -16.85584 -16.53026 -16.23374 -16.12704 -15.97624 -15.46786 -14.98262 -14.84273 -14.65659 -14.36118 -14.10515 -14.01949 -13.84736 -13.72217 -13.33101 -13.15959 -12.94975 -12.89018 -12.63719 -12.47481 -12.26321 -11.76106 -11.63658 -11.37899 -11.10093 -11.06704 -10.83249 -10.80060 -10.59648 -10.33862 -9.86409 -9.66896 -9.46958 -9.11491 -8.99335 -8.87316 -8.28672 -6.55126 -6.25743 -3.96940 0.88717 2.37180 2.41494 2.65389 2.94955 2.99123 3.01748 3.19017 3.24171 3.27723 3.61241 3.91217 4.16183 4.27887 4.37282 4.41810 4.58835 4.62890 4.86274 4.96221 4.98513 5.01000 5.09394 5.11575 5.13797 5.19444 5.26425 5.38265 5.41280 5.50240 5.55399 5.63125 5.76217 5.82045 5.83243 5.99323 6.06903 6.16091 6.49868 6.71342 6.95699 7.51387 7.55110 7.60500 7.72064 8.30851 8.52848 9.19463 10.81656 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.001976 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.779564 B =14169.649468 C =15545.526551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.243 3.757 3 N -0.496 5.496 4 C 0.076 3.924 5 C -0.095 4.095 6 C 0.600 3.400 7 O -0.522 6.522 8 N -0.725 5.725 9 C 0.147 3.853 10 H 0.097 0.903 11 C -0.162 4.162 12 C -0.140 4.140 13 C 0.121 3.879 14 N -0.741 5.741 15 C 0.530 3.470 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.552 5.552 28 H 0.421 0.579 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.185 0.815 33 H 0.394 0.606 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 10.001 -25.454 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.021 4.021 3 N -0.216 5.216 4 C -0.078 4.078 5 C -0.210 4.210 6 C 0.386 3.614 7 O -0.397 6.397 8 N -0.377 5.377 9 C 0.042 3.958 10 H 0.115 0.885 11 C -0.221 4.221 12 C -0.178 4.178 13 C -0.003 4.003 14 N -0.396 5.396 15 C 0.316 3.684 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 N -0.158 5.158 28 H 0.260 0.740 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.202 0.798 33 H 0.228 0.772 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.327 12.912 -24.112 27.353 hybrid contribution -0.388 -4.253 -0.710 4.329 sum -0.716 8.658 -24.821 26.298 Atomic orbital electron populations 1.20352 0.84055 1.04611 1.04445 1.23533 0.96001 0.81469 1.01063 1.70239 1.02123 1.28173 1.21088 1.22696 0.94818 0.91228 0.99083 1.21123 0.83646 0.96072 1.20196 1.16810 0.87050 0.81402 0.76116 1.90867 1.25817 1.73143 1.49910 1.46000 1.09834 1.05767 1.76119 1.20950 0.87534 0.89957 0.97347 0.88451 1.22172 1.01530 1.02776 0.95607 1.22140 1.03454 0.96901 0.95322 1.21251 1.01186 0.85833 0.92077 1.46003 1.72476 1.09442 1.11652 1.20347 0.75796 0.91248 0.80987 1.90719 1.50208 1.37956 1.60084 1.23529 1.04508 0.96348 1.06014 1.85431 1.88363 1.12133 0.97472 1.22856 1.53827 0.92728 0.99024 0.90925 1.25003 0.94752 0.98558 0.95310 1.70021 1.44267 1.32306 1.03645 0.86159 0.78246 0.82747 0.78291 1.20236 1.20724 1.19711 1.43245 1.06076 1.10260 1.56182 0.74047 0.89235 0.88543 0.90315 0.79822 0.77226 0.91126 0.92401 0.91719 0.90598 0.89108 0.91369 0.91924 0.76824 0.89266 0.89188 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.01 0.38 0.06 16 2 C 0.24 1.93 8.12 -155.62 -1.26 0.67 16 3 N -0.50 -5.38 11.20 -10.58 -0.12 -5.50 16 4 C 0.08 0.81 11.66 -17.47 -0.20 0.61 16 5 C -0.09 -0.91 7.08 -82.14 -0.58 -1.49 16 6 C 0.60 6.08 7.75 -12.82 -0.10 5.98 16 7 O -0.52 -7.03 16.57 5.20 0.09 -6.95 16 8 N -0.73 -5.15 4.53 -55.08 -0.25 -5.40 16 9 C 0.15 1.02 2.57 -67.93 -0.17 0.84 16 10 H 0.10 0.87 7.58 -51.93 -0.39 0.48 16 11 C -0.16 -0.97 9.48 37.16 0.35 -0.61 16 12 C -0.14 -0.83 4.87 -26.73 -0.13 -0.96 16 13 C 0.12 1.23 5.56 -4.04 -0.02 1.21 16 14 N -0.74 -8.81 5.56 -60.29 -0.33 -9.15 16 15 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16 16 O -0.52 -11.54 15.86 5.55 0.09 -11.45 16 17 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 23 Si 0.92 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 N -0.55 -3.74 6.07 -7.01 -0.04 -3.78 16 28 H 0.42 1.46 8.32 -40.82 -0.34 1.12 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.39 1.87 7.85 -40.82 -0.32 1.55 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 41 H 0.40 3.43 8.47 -40.82 -0.35 3.09 16 42 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -38.92 394.75 -8.95 -47.87 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.42 Total: 1.21 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.41 Total: 0.16 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.01 Total: -49.04 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.92 -8.95 -47.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721003911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.778 kcal (2) G-P(sol) polarization free energy of solvation -38.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds