Wall clock time and date at job start Sat Apr 11 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29942 * 126.29016 * 2 1 4 4 O 1.21302 * 110.25314 * 179.68241 * 3 2 1 5 5 C 1.33635 * 109.81000 * 0.46874 * 4 3 2 6 6 C 1.50702 * 126.55261 * 179.80164 * 5 4 3 7 7 N 1.46900 * 109.47145 * 269.69267 * 6 5 4 8 8 C 1.47476 * 111.00330 * 74.02604 * 7 6 5 9 9 C 1.53505 * 87.93358 * 138.70463 * 8 7 6 10 10 C 1.52999 * 114.34515 * 220.31423 * 9 8 7 11 11 H 1.09001 * 109.46960 * 38.97932 * 10 9 8 12 12 C 1.52997 * 109.47265 * 278.97865 * 10 9 8 13 13 N 1.46497 * 109.47310 * 158.97871 * 10 9 8 14 14 C 1.34781 * 120.00003 * 205.00341 * 13 10 9 15 15 O 1.21275 * 119.99887 * 359.97438 * 14 13 10 16 16 C 1.50697 * 119.99870 * 179.97438 * 14 13 10 17 17 S 1.80999 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00128 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00072 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00186 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47409 * 59.99815 * 22 20 18 24 24 H 1.48497 * 109.47416 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46946 * 299.99919 * 22 20 18 26 26 C 1.47482 * 110.99974 * 169.99816 * 7 6 5 27 27 N 1.31133 * 106.89993 * 359.53780 * 5 4 3 28 28 H 1.08998 * 109.47461 * 270.02174 * 1 2 3 29 29 H 1.08999 * 109.47373 * 30.02921 * 1 2 3 30 30 H 1.09006 * 109.47091 * 150.02417 * 1 2 3 31 31 H 1.08999 * 109.47549 * 149.68488 * 6 5 4 32 32 H 1.09001 * 109.47106 * 29.68693 * 6 5 4 33 33 H 1.09006 * 113.47432 * 253.46984 * 8 7 6 34 34 H 1.08998 * 113.47507 * 23.93313 * 8 7 6 35 35 H 1.09001 * 114.17007 * 87.62486 * 9 8 7 36 36 H 1.08998 * 109.47651 * 179.14278 * 12 10 9 37 37 H 1.09004 * 109.47378 * 299.14737 * 12 10 9 38 38 H 1.09005 * 109.47391 * 59.14931 * 12 10 9 39 39 H 0.97000 * 120.00342 * 24.99619 * 13 10 9 40 40 H 1.09001 * 109.47359 * 299.99615 * 16 14 13 41 41 H 1.09005 * 109.47205 * 59.99879 * 16 14 13 42 42 H 0.97001 * 120.00282 * 179.97438 * 21 20 18 43 43 H 1.08993 * 113.47709 * 336.05674 * 26 7 6 44 44 H 1.08999 * 113.47546 * 106.46877 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5298 -0.6212 0.0008 6 6 4.7969 -1.4370 0.0014 7 7 5.2091 -1.7024 -1.3834 8 6 5.7737 -0.4916 -2.0080 9 6 6.8518 -1.3858 -2.6362 10 6 8.2547 -0.7753 -2.6388 11 1 8.4200 -0.2407 -1.7034 12 6 8.3853 0.1977 -3.8123 13 7 9.2508 -1.8409 -2.7748 14 6 10.5035 -1.6552 -2.3137 15 8 10.8063 -0.6058 -1.7865 16 6 11.5280 -2.7516 -2.4531 17 16 13.1001 -2.2021 -1.7442 18 6 14.0840 -3.6347 -2.0342 19 1 13.6527 -4.4961 -2.5226 20 6 15.4134 -3.6559 -1.6360 21 7 15.9391 -2.6058 -1.0412 22 14 16.4567 -5.1744 -1.9440 23 1 16.5147 -5.4476 -3.4026 24 1 17.8300 -4.9446 -1.4280 25 1 15.8545 -6.3386 -1.2459 26 6 6.5616 -2.2888 -1.4291 27 7 2.3030 -1.0841 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.6205 -2.3819 0.5154 32 1 5.5840 -0.8853 0.5153 33 1 5.1105 -0.0313 -2.7405 34 1 6.1691 0.2245 -1.2877 35 1 6.5691 -1.8188 -3.5957 36 1 9.3797 0.6441 -3.8054 37 1 8.2349 -0.3400 -4.7486 38 1 7.6343 0.9822 -3.7192 39 1 9.0087 -2.6801 -3.1967 40 1 11.1825 -3.6409 -1.9259 41 1 11.6679 -2.9861 -3.5084 42 1 16.8681 -2.6207 -0.7625 43 1 7.1672 -2.0523 -0.5544 44 1 6.5660 -3.3518 -1.6699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725241176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:46 Heat of formation + Delta-G solvation = 67.574284 kcal Electronic energy + Delta-G solvation = -26105.441034 eV Core-core repulsion = 22188.788449 eV Total energy + Delta-G solvation = -3916.652585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.96940 -41.00273 -39.07675 -36.48067 -35.50003 -33.89920 -32.44314 -31.69844 -30.21586 -29.42342 -28.51912 -26.36758 -25.91922 -25.48533 -23.93816 -22.52056 -21.50697 -20.46313 -19.99630 -18.56642 -17.98000 -17.74935 -16.70956 -16.53239 -16.18836 -15.87934 -15.28768 -14.95919 -14.81677 -14.58148 -14.12265 -14.03558 -13.90233 -13.71185 -13.27011 -13.21990 -13.13696 -12.84685 -12.79119 -12.62161 -12.33263 -11.99188 -11.88326 -11.80424 -11.42244 -11.32433 -11.10759 -11.05719 -11.04607 -10.93272 -10.77286 -10.32149 -9.83939 -9.57569 -9.39465 -9.07779 -8.92433 -8.25946 -6.51775 -6.23037 -3.93849 0.70954 1.81085 2.32100 2.96504 3.06246 3.18520 3.22406 3.26079 3.28809 3.46608 3.59797 3.63313 4.06135 4.19261 4.22245 4.38881 4.55543 4.72282 4.79109 4.86314 4.91758 4.94873 5.00706 5.09610 5.12190 5.15248 5.16683 5.25237 5.27864 5.37071 5.46533 5.53511 5.57521 5.63359 5.66553 5.72633 5.86770 5.98803 6.12058 6.18202 6.33767 6.62439 7.57790 7.68665 7.77127 8.33472 8.58847 9.22272 10.84267 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028417 B = 0.001733 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.083911 B =16157.180638 C =16432.953800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.166 3.834 3 N -0.385 5.385 4 O 0.077 5.923 5 C 0.192 3.808 6 C 0.109 3.891 7 N -0.465 5.465 8 C 0.001 3.999 9 C -0.119 4.119 10 C 0.155 3.845 11 H 0.088 0.912 12 C -0.163 4.163 13 N -0.733 5.733 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.009 3.991 27 N -0.468 5.468 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 43 H 0.082 0.918 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.301 2.313 -1.157 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.093 5.093 4 O 0.019 5.981 5 C -0.029 4.029 6 C -0.020 4.020 7 N -0.189 5.189 8 C -0.128 4.128 9 C -0.139 4.139 10 C 0.049 3.951 11 H 0.106 0.894 12 C -0.222 4.222 13 N -0.388 5.388 14 C 0.320 3.680 15 O -0.392 6.392 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.119 4.119 27 N -0.203 5.203 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -28.870 4.325 -0.434 29.195 hybrid contribution 0.915 -2.212 -0.557 2.458 sum -27.955 2.113 -0.990 28.052 Atomic orbital electron populations 1.20147 0.82863 1.04760 1.04335 1.25961 1.00690 0.83490 1.00523 1.74651 0.89353 1.23924 1.21401 1.85302 1.22464 1.24790 1.65507 1.28487 0.96767 0.81957 0.95726 1.21224 0.88144 0.98584 0.94089 1.69137 1.22962 1.14581 1.12214 1.23989 0.95970 0.93489 0.99358 1.23015 0.94102 0.97314 0.99455 1.20824 0.85472 0.88620 1.00150 0.89371 1.22160 1.02970 0.99117 0.97910 1.46034 1.10797 1.18501 1.63419 1.20303 0.82055 0.88679 0.76972 1.90700 1.78848 1.27636 1.41986 1.23537 1.01391 0.99995 1.05538 1.85389 0.98154 1.23019 1.76798 1.22830 0.98251 1.01672 1.45753 0.90976 1.24983 0.96880 0.97118 0.94533 1.70006 1.14327 1.28650 1.37301 0.86232 0.78835 0.81744 0.78736 1.19937 1.20812 1.19945 1.23901 0.88051 1.01393 0.98579 1.71912 0.99641 1.29231 1.19479 0.89279 0.89473 0.88939 0.85686 0.89664 0.89236 0.90007 0.87147 0.91520 0.92426 0.91888 0.76807 0.89242 0.89253 0.92123 0.89966 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.17 1.62 8.22 -156.37 -1.28 0.33 16 3 N -0.38 -4.22 12.16 30.90 0.38 -3.84 16 4 O 0.08 0.79 11.31 18.12 0.20 0.99 16 5 C 0.19 1.76 7.66 -13.06 -0.10 1.66 16 6 C 0.11 0.73 5.45 -4.98 -0.03 0.70 16 7 N -0.47 -3.42 6.40 -246.11 -1.58 -5.00 16 8 C 0.00 0.01 6.87 -7.56 -0.05 -0.04 16 9 C -0.12 -0.83 3.48 -90.09 -0.31 -1.14 16 10 C 0.15 1.50 2.34 -67.93 -0.16 1.35 16 11 H 0.09 1.02 7.45 -51.93 -0.39 0.63 16 12 C -0.16 -1.59 9.47 37.16 0.35 -1.24 16 13 N -0.73 -8.40 4.96 -53.81 -0.27 -8.66 16 14 C 0.53 9.12 7.81 -10.98 -0.09 9.04 16 15 O -0.52 -10.98 15.52 5.56 0.09 -10.90 16 16 C -0.15 -2.94 6.16 36.00 0.22 -2.71 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 19 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 22 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.01 0.06 7.17 -7.55 -0.05 0.01 16 27 N -0.47 -4.91 11.55 -9.87 -0.11 -5.03 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.43 7.56 -51.93 -0.39 0.04 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.54 7.57 -51.93 -0.39 0.15 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 40 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 41 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.08 0.57 7.73 -51.93 -0.40 0.17 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -35.69 389.44 -9.39 -45.09 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.54 Total: -0.95 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.93 Total: -4.75 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.85 Total: -47.62 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.29 Total: -9.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.69 -9.39 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725241176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.660 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds