Wall clock time and date at job start Sat Apr 11 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29942 * 126.29016 * 2 1 4 4 O 1.21302 * 110.25314 * 179.68241 * 3 2 1 5 5 C 1.33635 * 109.81000 * 0.46874 * 4 3 2 6 6 C 1.50702 * 126.55261 * 179.80164 * 5 4 3 7 7 N 1.46900 * 109.47145 * 269.69267 * 6 5 4 8 8 C 1.47476 * 111.00330 * 74.02604 * 7 6 5 9 9 C 1.53505 * 87.93358 * 138.70463 * 8 7 6 10 10 C 1.52999 * 114.34515 * 220.31423 * 9 8 7 11 11 H 1.09001 * 109.46960 * 38.97932 * 10 9 8 12 12 C 1.52997 * 109.47265 * 278.97865 * 10 9 8 13 13 N 1.46497 * 109.47310 * 158.97871 * 10 9 8 14 14 C 1.34781 * 120.00003 * 205.00341 * 13 10 9 15 15 O 1.21275 * 119.99887 * 359.97438 * 14 13 10 16 16 C 1.50697 * 119.99870 * 179.97438 * 14 13 10 17 17 S 1.80999 * 109.47126 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00128 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99698 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00072 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00186 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47409 * 59.99815 * 22 20 18 24 24 H 1.48497 * 109.47416 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46946 * 299.99919 * 22 20 18 26 26 C 1.47482 * 110.99974 * 169.99816 * 7 6 5 27 27 N 1.31133 * 106.89993 * 359.53780 * 5 4 3 28 28 H 1.08998 * 109.47461 * 270.02174 * 1 2 3 29 29 H 1.08999 * 109.47373 * 30.02921 * 1 2 3 30 30 H 1.09006 * 109.47091 * 150.02417 * 1 2 3 31 31 H 1.08999 * 109.47549 * 149.68488 * 6 5 4 32 32 H 1.09001 * 109.47106 * 29.68693 * 6 5 4 33 33 H 1.09006 * 113.47432 * 253.46984 * 8 7 6 34 34 H 1.08998 * 113.47507 * 23.93313 * 8 7 6 35 35 H 1.09001 * 114.17007 * 87.62486 * 9 8 7 36 36 H 1.08998 * 109.47651 * 179.14278 * 12 10 9 37 37 H 1.09004 * 109.47378 * 299.14737 * 12 10 9 38 38 H 1.09005 * 109.47391 * 59.14931 * 12 10 9 39 39 H 0.97000 * 120.00342 * 24.99619 * 13 10 9 40 40 H 1.09001 * 109.47359 * 299.99615 * 16 14 13 41 41 H 1.09005 * 109.47205 * 59.99879 * 16 14 13 42 42 H 0.97001 * 120.00282 * 179.97438 * 21 20 18 43 43 H 1.08993 * 113.47709 * 336.05674 * 26 7 6 44 44 H 1.08999 * 113.47546 * 106.46877 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5298 -0.6212 0.0008 6 6 4.7969 -1.4370 0.0014 7 7 5.2091 -1.7024 -1.3834 8 6 5.7737 -0.4916 -2.0080 9 6 6.8518 -1.3858 -2.6362 10 6 8.2547 -0.7753 -2.6388 11 1 8.4200 -0.2407 -1.7034 12 6 8.3853 0.1977 -3.8123 13 7 9.2508 -1.8409 -2.7748 14 6 10.5035 -1.6552 -2.3137 15 8 10.8063 -0.6058 -1.7865 16 6 11.5280 -2.7516 -2.4531 17 16 13.1001 -2.2021 -1.7442 18 6 14.0840 -3.6347 -2.0342 19 1 13.6527 -4.4961 -2.5226 20 6 15.4134 -3.6559 -1.6360 21 7 15.9391 -2.6058 -1.0412 22 14 16.4567 -5.1744 -1.9440 23 1 16.5147 -5.4476 -3.4026 24 1 17.8300 -4.9446 -1.4280 25 1 15.8545 -6.3386 -1.2459 26 6 6.5616 -2.2888 -1.4291 27 7 2.3030 -1.0841 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 4.6205 -2.3819 0.5154 32 1 5.5840 -0.8853 0.5153 33 1 5.1105 -0.0313 -2.7405 34 1 6.1691 0.2245 -1.2877 35 1 6.5691 -1.8188 -3.5957 36 1 9.3797 0.6441 -3.8054 37 1 8.2349 -0.3400 -4.7486 38 1 7.6343 0.9822 -3.7192 39 1 9.0087 -2.6801 -3.1967 40 1 11.1825 -3.6409 -1.9259 41 1 11.6679 -2.9861 -3.5084 42 1 16.8681 -2.6207 -0.7625 43 1 7.1672 -2.0523 -0.5544 44 1 6.5660 -3.3518 -1.6699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725241176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:46 Heat of formation + Delta-G solvation = 38.616149 kcal Electronic energy + Delta-G solvation = -26106.696752 eV Core-core repulsion = 22188.788449 eV Total energy + Delta-G solvation = -3917.908304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.68843 -41.67101 -40.31258 -37.18520 -36.49540 -34.65275 -34.55478 -32.74885 -30.97213 -30.08825 -29.71787 -27.63567 -26.92518 -26.58946 -24.64763 -23.35169 -22.21795 -21.51980 -20.81588 -19.75201 -19.29067 -18.57403 -17.79578 -17.63013 -16.85652 -16.84306 -16.58418 -16.33111 -16.10046 -15.82520 -15.17676 -14.73662 -14.67680 -14.50099 -14.47913 -14.23324 -13.96013 -13.85744 -13.63587 -13.28689 -13.25448 -13.14180 -13.06027 -12.84744 -12.66437 -12.57508 -12.54702 -12.13555 -11.97746 -11.86145 -11.70162 -11.53381 -11.10537 -11.03083 -10.83777 -10.23705 -10.20100 -9.93950 -8.62889 -8.32147 -6.09558 0.00740 1.11447 1.30089 1.45396 1.49441 1.59154 1.67674 1.69478 2.27039 2.32437 2.58520 2.89959 3.00955 3.02026 3.32018 3.43683 3.60628 3.80120 3.99800 4.04194 4.17484 4.20785 4.27539 4.34758 4.40393 4.43738 4.49619 4.52422 4.54846 4.57327 4.66575 4.70266 4.80330 4.83402 4.86828 5.01141 5.04311 5.08792 5.21143 5.36417 5.44183 5.58717 5.79303 6.21987 6.60387 7.06612 7.09388 7.34047 8.76588 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028417 B = 0.001733 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.083911 B =16157.180638 C =16432.953800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.162 3.838 3 N -0.410 5.410 4 O 0.067 5.933 5 C 0.197 3.803 6 C 0.109 3.891 7 N -0.473 5.473 8 C 0.002 3.998 9 C -0.105 4.105 10 C 0.157 3.843 11 H 0.070 0.930 12 C -0.160 4.160 13 N -0.705 5.705 14 C 0.537 3.463 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.996 3.004 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.262 1.262 26 C 0.012 3.988 27 N -0.491 5.491 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.416 0.584 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.270 0.730 43 H 0.080 0.920 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.006 0.183 -2.203 30.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.121 5.121 4 O 0.012 5.988 5 C -0.024 4.024 6 C -0.021 4.021 7 N -0.197 5.197 8 C -0.128 4.128 9 C -0.125 4.125 10 C 0.052 3.948 11 H 0.088 0.912 12 C -0.218 4.218 13 N -0.359 5.359 14 C 0.323 3.677 15 O -0.444 6.444 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.187 1.187 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.116 4.116 27 N -0.226 5.226 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.254 0.746 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.098 0.902 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -30.617 2.165 -1.509 30.730 hybrid contribution 1.289 -1.522 -0.260 2.012 sum -29.328 0.642 -1.768 29.388 Atomic orbital electron populations 1.20353 0.80441 1.05752 1.05586 1.26674 1.02197 0.83008 0.99214 1.74642 0.89738 1.24793 1.22965 1.85268 1.22385 1.25291 1.65899 1.28963 0.97311 0.81755 0.94406 1.21412 0.87528 0.99010 0.94105 1.69139 1.23245 1.14726 1.12570 1.23999 0.95799 0.93538 0.99430 1.22901 0.91796 0.97315 1.00442 1.20920 0.86367 0.88142 0.99409 0.91207 1.22126 1.01546 0.99647 0.98516 1.45757 1.09032 1.19692 1.61423 1.19982 0.83312 0.87373 0.77039 1.90694 1.79922 1.29217 1.44557 1.23386 0.97623 1.01141 1.06013 1.85568 1.03586 1.24931 1.78429 1.23189 0.98817 1.01852 1.45631 0.89889 1.26096 0.98374 1.00580 0.94006 1.70177 1.14731 1.31197 1.38669 0.85035 0.76647 0.77383 0.79129 1.18720 1.20547 1.18632 1.23913 0.87596 1.01897 0.98226 1.71935 1.00292 1.29808 1.20578 0.87789 0.88443 0.87927 0.84546 0.88113 0.89280 0.89866 0.85593 0.94883 0.90900 0.90096 0.74642 0.87076 0.87449 0.92066 0.90176 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.23 0.75 0.12 16 2 C 0.16 3.02 8.22 138.46 1.14 4.16 16 3 N -0.41 -8.85 12.16 -60.33 -0.73 -9.58 16 4 O 0.07 1.33 11.31 74.90 0.85 2.18 16 5 C 0.20 3.43 7.66 88.38 0.68 4.11 16 6 C 0.11 1.27 5.45 85.56 0.47 1.74 16 7 N -0.47 -5.91 6.40 -932.54 -5.97 -11.88 16 8 C 0.00 0.02 6.87 83.57 0.57 0.59 16 9 C -0.11 -1.18 3.48 -10.45 -0.04 -1.21 16 10 C 0.16 2.79 2.34 44.99 0.11 2.89 16 11 H 0.07 1.57 7.45 -2.39 -0.02 1.56 16 12 C -0.16 -2.91 9.47 71.98 0.68 -2.23 16 13 N -0.71 -14.72 4.96 -442.55 -2.19 -16.92 16 14 C 0.54 18.01 7.81 87.66 0.68 18.69 16 15 O -0.57 -24.55 15.52 -3.01 -0.05 -24.60 16 16 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 17 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.55 -30.62 9.50 67.95 0.65 -29.98 16 19 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.80 5.49 84.86 0.47 1.26 16 21 N -0.91 -55.38 13.22 21.65 0.29 -55.10 16 22 Si 1.00 42.88 29.55 68.60 2.03 44.90 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 C 0.01 0.13 7.17 83.57 0.60 0.72 16 27 N -0.49 -9.86 11.55 -303.21 -3.50 -13.36 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 0.86 7.56 -2.39 -0.02 0.85 16 33 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 0.98 7.57 -2.39 -0.02 0.97 16 35 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.42 5.86 8.60 -92.71 -0.80 5.06 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.08 0.93 7.73 -2.39 -0.02 0.91 16 44 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -80.29 389.44 -3.04 -83.33 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.22 Total: 13.94 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 7.19 Total: -3.52 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -12.11 Total: -106.84 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.80 Total: -22.42 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -80.29 -3.04 -83.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725241176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.945 kcal (2) G-P(sol) polarization free energy of solvation -80.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds