Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31134 * 126.54823 * 2 1 4 4 C 1.34497 * 105.61176 * 180.12368 * 3 2 1 5 5 C 1.50703 * 126.28746 * 179.90272 * 4 3 2 6 6 H 1.09002 * 109.47152 * 14.71191 * 5 4 3 7 7 C 1.53002 * 109.46966 * 254.71332 * 5 4 3 8 8 N 1.46899 * 109.47107 * 134.71104 * 5 4 3 9 9 C 1.46897 * 111.00355 * 204.99940 * 8 5 4 10 10 H 1.09007 * 110.63578 * 34.29822 * 9 8 5 11 11 C 1.55149 * 110.72227 * 157.43973 * 9 8 5 12 12 C 1.55129 * 101.48720 * 153.73819 * 11 9 8 13 13 N 1.47428 * 104.93608 * 323.22249 * 12 11 9 14 14 C 1.34786 * 125.64515 * 204.03418 * 13 12 11 15 15 O 1.21277 * 119.99576 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00023 * 359.96429 * 14 13 12 17 17 S 1.80992 * 109.47078 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99923 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99815 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99919 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00038 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47230 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.46735 * 209.99630 * 22 20 18 25 25 H 1.48494 * 109.47024 * 329.99558 * 22 20 18 26 26 C 1.47020 * 108.70829 * 24.00658 * 13 12 11 27 27 N 1.29945 * 107.42740 * 359.63985 * 4 3 2 28 28 O 1.21307 * 110.25077 * 0.22820 * 27 4 3 29 29 H 1.09002 * 109.47245 * 180.25166 * 1 2 3 30 30 H 1.09000 * 109.46894 * 300.25512 * 1 2 3 31 31 H 1.08994 * 109.47260 * 60.25131 * 1 2 3 32 32 H 1.08996 * 109.47407 * 60.00310 * 7 5 4 33 33 H 1.09000 * 109.46986 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47075 * 299.99352 * 7 5 4 35 35 H 1.00898 * 111.00393 * 328.95895 * 8 5 4 36 36 H 1.08998 * 111.00858 * 271.94058 * 11 9 8 37 37 H 1.08997 * 111.00449 * 35.79834 * 11 9 8 38 38 H 1.08994 * 110.42170 * 204.29921 * 12 11 9 39 39 H 1.08998 * 110.29726 * 82.08868 * 12 11 9 40 40 H 1.09003 * 109.46872 * 300.00055 * 16 14 13 41 41 H 1.09001 * 109.47179 * 59.99436 * 16 14 13 42 42 H 0.96998 * 120.00034 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.87997 * 239.52035 * 26 13 12 44 44 H 1.09000 * 110.01599 * 118.42695 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8112 1.3887 -0.0060 6 1 4.5792 2.4212 0.2552 7 6 5.4426 1.3446 -1.3990 8 7 5.7526 0.8349 0.9762 9 6 6.6948 1.8621 1.4398 10 1 6.2090 2.8369 1.4844 11 6 7.2872 1.4801 2.8220 12 6 8.6470 2.2260 2.7921 13 7 9.1076 2.1209 1.3956 14 6 10.3881 2.2011 0.9826 15 8 10.6523 2.0997 -0.1967 16 6 11.4913 2.4170 1.9862 17 16 13.0838 2.4788 1.1282 18 6 14.1606 2.7327 2.4997 19 1 13.7558 2.8015 3.4985 20 6 15.5291 2.8433 2.2963 21 7 16.3334 3.0336 3.3207 22 14 16.2293 2.7237 0.5686 23 1 16.2805 4.0774 -0.0396 24 1 17.6001 2.1557 0.6284 25 1 15.3641 1.8428 -0.2562 26 6 7.9389 1.9133 0.5280 27 7 3.4645 -0.7241 0.0035 28 8 2.3029 -1.0736 0.0052 29 1 -0.3634 -1.0277 0.0045 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5099 -0.8922 32 1 4.7440 1.7556 -2.1278 33 1 6.3593 1.9343 -1.4012 34 1 5.6746 0.3121 -1.6602 35 1 5.2615 0.4178 1.7527 36 1 6.6559 1.8452 3.6320 37 1 7.4354 0.4030 2.8993 38 1 9.3589 1.7459 3.4634 39 1 8.5110 3.2714 3.0691 40 1 11.3250 3.3570 2.5124 41 1 11.4966 1.5956 2.7027 42 1 17.2898 3.1112 3.1786 43 1 8.0411 0.9725 -0.0128 44 1 7.8472 2.7386 -0.1782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731430882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = 42.829624 kcal Electronic energy + Delta-G solvation = -26322.654199 eV Core-core repulsion = 22404.928605 eV Total energy + Delta-G solvation = -3917.725594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.05795 -40.03821 -38.27067 -36.82608 -35.57399 -33.71064 -32.42814 -31.75965 -29.88312 -29.56496 -29.32818 -27.60759 -25.60534 -25.07223 -23.68298 -23.29873 -21.17146 -20.85527 -19.44264 -18.61380 -18.03788 -17.66425 -16.87699 -16.64789 -16.22740 -15.46949 -15.18575 -14.99518 -14.88805 -14.80484 -14.06007 -13.97231 -13.90590 -13.74230 -13.43906 -13.27048 -12.94969 -12.79284 -12.69355 -12.62591 -12.34963 -11.97347 -11.92010 -11.86912 -11.73017 -11.57217 -11.39179 -11.25185 -11.07760 -10.99208 -10.59391 -10.33771 -9.84606 -9.51801 -9.07707 -8.99002 -8.55940 -8.47908 -6.90499 -6.27756 -3.99398 0.69478 1.70954 2.35446 2.66691 2.93888 2.98562 3.20173 3.34588 3.44918 3.52490 3.61108 3.77375 4.09477 4.30624 4.34756 4.39037 4.60446 4.65378 4.67007 4.73197 4.80783 4.83422 4.96727 5.02612 5.11396 5.13980 5.21231 5.25488 5.30668 5.40747 5.45350 5.49769 5.51574 5.60966 5.72602 5.83800 5.84783 5.91403 6.02506 6.35389 6.47508 6.75178 7.59076 7.73342 7.95288 8.42554 8.46441 9.18556 10.81426 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.001811 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.657843 B =15460.909879 C =15864.106537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.175 3.825 3 N -0.482 5.482 4 C 0.164 3.836 5 C 0.179 3.821 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.666 5.666 9 C 0.074 3.926 10 H 0.068 0.932 11 C -0.134 4.134 12 C 0.102 3.898 13 N -0.624 5.624 14 C 0.547 3.453 15 O -0.517 6.517 16 C -0.117 4.117 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.119 3.881 27 N -0.358 5.358 28 O 0.079 5.921 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.350 0.650 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.081 0.919 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.449 -4.631 -2.762 35.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.046 4.046 3 N -0.216 5.216 4 C -0.110 4.110 5 C 0.068 3.932 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.300 5.300 9 C -0.036 4.036 10 H 0.086 0.914 11 C -0.173 4.173 12 C -0.021 4.021 13 N -0.362 5.362 14 C 0.335 3.665 15 O -0.391 6.391 16 C -0.268 4.268 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.005 4.005 27 N -0.064 5.064 28 O 0.018 5.982 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -33.543 -5.086 -4.945 34.285 hybrid contribution -0.566 0.634 1.476 1.704 sum -34.110 -4.452 -3.468 34.573 Atomic orbital electron populations 1.20402 0.80139 1.05728 1.05723 1.28876 0.98996 0.80770 0.95915 1.71883 1.00146 1.29043 1.20565 1.25828 0.94939 0.88491 1.01731 1.19889 0.83141 0.94355 0.95824 0.90361 1.21911 1.01199 1.03907 0.93104 1.60451 1.19422 1.32045 1.18035 1.22673 0.92868 0.93549 0.94535 0.91437 1.23022 0.96177 1.02247 0.95825 1.22297 0.95385 1.00483 0.83981 1.48406 1.05589 1.74130 1.08045 1.19977 0.81315 0.75669 0.89490 1.90707 1.81894 1.48622 1.17872 1.23253 0.97279 1.05378 1.00877 1.84800 0.96398 1.95580 1.14792 1.22311 0.93576 1.57255 0.93718 0.89395 1.24703 0.95829 0.93182 0.97532 1.69937 1.04269 1.47166 1.30328 0.86739 0.79895 0.80404 0.84857 1.19207 1.19926 1.15897 1.21938 0.83401 1.02365 0.92788 1.74731 0.96749 1.15451 1.19427 1.85362 1.11608 1.35832 1.65355 0.88379 0.87823 0.87812 0.92021 0.90476 0.91137 0.83053 0.89726 0.89306 0.89796 0.91091 0.88592 0.88536 0.91954 0.90043 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.07 10.51 36.00 0.38 0.31 16 2 C 0.17 1.11 8.51 -13.05 -0.11 1.00 16 3 N -0.48 -4.27 11.55 -9.86 -0.11 -4.39 16 4 C 0.16 1.57 6.71 -156.37 -1.05 0.52 16 5 C 0.18 1.55 3.16 -68.86 -0.22 1.34 16 6 H 0.08 0.62 7.46 -51.93 -0.39 0.24 16 7 C -0.14 -1.28 9.21 37.16 0.34 -0.94 16 8 N -0.67 -5.82 6.13 -99.04 -0.61 -6.43 16 9 C 0.07 0.64 3.24 -65.88 -0.21 0.42 16 10 H 0.07 0.51 7.49 -51.93 -0.39 0.12 16 11 C -0.13 -1.05 6.51 -24.47 -0.16 -1.21 16 12 C 0.10 1.05 6.70 -2.41 -0.02 1.03 16 13 N -0.62 -8.88 3.33 -170.38 -0.57 -9.45 16 14 C 0.55 10.39 7.87 -10.98 -0.09 10.31 16 15 O -0.52 -11.77 16.19 5.56 0.09 -11.68 16 16 C -0.12 -2.36 5.16 36.01 0.19 -2.17 16 17 S -0.14 -3.68 18.55 -107.50 -1.99 -5.68 16 18 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -26.71 13.97 55.49 0.78 -25.94 16 22 Si 0.86 22.03 27.74 -169.99 -4.72 17.32 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 26 C 0.12 1.44 5.12 -3.06 -0.02 1.43 16 27 N -0.36 -3.71 12.15 30.90 0.38 -3.33 16 28 O 0.08 0.66 11.31 18.10 0.20 0.86 16 29 H 0.10 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.70 6.09 -51.93 -0.32 0.38 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.35 2.87 8.08 -39.29 -0.32 2.55 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.85 7.47 -51.93 -0.39 0.46 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 41 H 0.10 1.81 7.85 -51.91 -0.41 1.40 16 42 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 44 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -36.68 379.68 -7.97 -44.65 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.39 Total: -1.59 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -0.75 Total: -0.08 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.14 Total: -49.53 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.29 Total: -10.82 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.32 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.68 -7.97 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731430882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.483 kcal (2) G-P(sol) polarization free energy of solvation -36.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds