Wall clock time and date at job start Sat Apr 11 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31134 * 126.54823 * 2 1 4 4 C 1.34497 * 105.61176 * 180.12368 * 3 2 1 5 5 C 1.50703 * 126.28746 * 179.90272 * 4 3 2 6 6 H 1.09002 * 109.47152 * 14.71191 * 5 4 3 7 7 C 1.53002 * 109.46966 * 254.71332 * 5 4 3 8 8 N 1.46899 * 109.47107 * 134.71104 * 5 4 3 9 9 C 1.46897 * 111.00355 * 204.99940 * 8 5 4 10 10 H 1.09007 * 110.63578 * 34.29822 * 9 8 5 11 11 C 1.55149 * 110.72227 * 157.43973 * 9 8 5 12 12 C 1.55129 * 101.48720 * 153.73819 * 11 9 8 13 13 N 1.47428 * 104.93608 * 323.22249 * 12 11 9 14 14 C 1.34786 * 125.64515 * 204.03418 * 13 12 11 15 15 O 1.21277 * 119.99576 * 179.97438 * 14 13 12 16 16 C 1.50699 * 120.00023 * 359.96429 * 14 13 12 17 17 S 1.80992 * 109.47078 * 179.97438 * 16 14 13 18 18 C 1.76204 * 99.99923 * 179.97438 * 17 16 14 19 19 H 1.07993 * 119.99815 * 0.02562 * 18 17 16 20 20 C 1.38797 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99919 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00038 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47230 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.46735 * 209.99630 * 22 20 18 25 25 H 1.48494 * 109.47024 * 329.99558 * 22 20 18 26 26 C 1.47020 * 108.70829 * 24.00658 * 13 12 11 27 27 N 1.29945 * 107.42740 * 359.63985 * 4 3 2 28 28 O 1.21307 * 110.25077 * 0.22820 * 27 4 3 29 29 H 1.09002 * 109.47245 * 180.25166 * 1 2 3 30 30 H 1.09000 * 109.46894 * 300.25512 * 1 2 3 31 31 H 1.08994 * 109.47260 * 60.25131 * 1 2 3 32 32 H 1.08996 * 109.47407 * 60.00310 * 7 5 4 33 33 H 1.09000 * 109.46986 * 180.02562 * 7 5 4 34 34 H 1.09002 * 109.47075 * 299.99352 * 7 5 4 35 35 H 1.00898 * 111.00393 * 328.95895 * 8 5 4 36 36 H 1.08998 * 111.00858 * 271.94058 * 11 9 8 37 37 H 1.08997 * 111.00449 * 35.79834 * 11 9 8 38 38 H 1.08994 * 110.42170 * 204.29921 * 12 11 9 39 39 H 1.08998 * 110.29726 * 82.08868 * 12 11 9 40 40 H 1.09003 * 109.46872 * 300.00055 * 16 14 13 41 41 H 1.09001 * 109.47179 * 59.99436 * 16 14 13 42 42 H 0.96998 * 120.00034 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.87997 * 239.52035 * 26 13 12 44 44 H 1.09000 * 110.01599 * 118.42695 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8112 1.3887 -0.0060 6 1 4.5792 2.4212 0.2552 7 6 5.4426 1.3446 -1.3990 8 7 5.7526 0.8349 0.9762 9 6 6.6948 1.8621 1.4398 10 1 6.2090 2.8369 1.4844 11 6 7.2872 1.4801 2.8220 12 6 8.6470 2.2260 2.7921 13 7 9.1076 2.1209 1.3956 14 6 10.3881 2.2011 0.9826 15 8 10.6523 2.0997 -0.1967 16 6 11.4913 2.4170 1.9862 17 16 13.0838 2.4788 1.1282 18 6 14.1606 2.7327 2.4997 19 1 13.7558 2.8015 3.4985 20 6 15.5291 2.8433 2.2963 21 7 16.3334 3.0336 3.3207 22 14 16.2293 2.7237 0.5686 23 1 16.2805 4.0774 -0.0396 24 1 17.6001 2.1557 0.6284 25 1 15.3641 1.8428 -0.2562 26 6 7.9389 1.9133 0.5280 27 7 3.4645 -0.7241 0.0035 28 8 2.3029 -1.0736 0.0052 29 1 -0.3634 -1.0277 0.0045 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5099 -0.8922 32 1 4.7440 1.7556 -2.1278 33 1 6.3593 1.9343 -1.4012 34 1 5.6746 0.3121 -1.6602 35 1 5.2615 0.4178 1.7527 36 1 6.6559 1.8452 3.6320 37 1 7.4354 0.4030 2.8993 38 1 9.3589 1.7459 3.4634 39 1 8.5110 3.2714 3.0691 40 1 11.3250 3.3570 2.5124 41 1 11.4966 1.5956 2.7027 42 1 17.2898 3.1112 3.1786 43 1 8.0411 0.9725 -0.0128 44 1 7.8472 2.7386 -0.1782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731430882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:54 Heat of formation + Delta-G solvation = 13.886462 kcal Electronic energy + Delta-G solvation = -26323.909269 eV Core-core repulsion = 22404.928605 eV Total energy + Delta-G solvation = -3918.980663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.67083 -41.17409 -39.32670 -37.70115 -36.27150 -34.68551 -34.33410 -32.69941 -31.19330 -30.35040 -29.69547 -28.68117 -27.83648 -25.79969 -24.42184 -24.11233 -21.94100 -21.50944 -20.75961 -19.67418 -19.23465 -18.60565 -18.13359 -17.73742 -17.14646 -16.90148 -16.59023 -16.27792 -15.95907 -15.65178 -15.36701 -14.92224 -14.86481 -14.40966 -14.37693 -14.18229 -14.05654 -13.81823 -13.69988 -13.39121 -13.34754 -13.12999 -13.01577 -12.97725 -12.72771 -12.69943 -12.57967 -12.38681 -12.24200 -12.06686 -11.89120 -11.78439 -11.18144 -11.06381 -10.91370 -10.55352 -9.77731 -9.73335 -9.02396 -8.52632 -6.24047 0.15672 0.94109 1.09930 1.30230 1.43964 1.49188 1.51837 1.93305 1.99161 2.24150 2.40624 2.66699 2.79982 2.85594 3.19553 3.31877 3.51686 3.74284 3.82954 3.99477 4.10062 4.15154 4.21717 4.26685 4.34569 4.38545 4.49284 4.58030 4.61874 4.63911 4.65380 4.72868 4.77451 4.85630 4.88680 4.96546 5.07267 5.14798 5.16442 5.29464 5.69795 5.78031 6.10058 6.10393 6.32665 6.92549 7.03111 7.16079 8.59646 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.001811 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.657843 B =15460.909879 C =15864.106537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.187 3.813 3 N -0.507 5.507 4 C 0.158 3.842 5 C 0.182 3.818 6 H 0.090 0.910 7 C -0.138 4.138 8 N -0.673 5.673 9 C 0.086 3.914 10 H 0.089 0.911 11 C -0.121 4.121 12 C 0.091 3.909 13 N -0.615 5.615 14 C 0.546 3.454 15 O -0.565 6.565 16 C -0.101 4.101 17 S -0.177 6.177 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.048 3.952 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.257 1.257 25 H -0.239 1.239 26 C 0.116 3.884 27 N -0.387 5.387 28 O 0.073 5.927 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.355 0.645 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.277 0.723 43 H 0.060 0.940 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.264 -4.417 -2.330 38.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.032 4.032 3 N -0.242 5.242 4 C -0.116 4.116 5 C 0.071 3.929 6 H 0.108 0.892 7 C -0.197 4.197 8 N -0.307 5.307 9 C -0.024 4.024 10 H 0.107 0.893 11 C -0.159 4.159 12 C -0.032 4.032 13 N -0.350 5.350 14 C 0.334 3.666 15 O -0.444 6.444 16 C -0.252 4.252 17 S 0.049 5.951 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.157 4.157 21 N -0.553 5.553 22 Si 0.735 3.265 23 H -0.186 1.186 24 H -0.182 1.182 25 H -0.163 1.163 26 C -0.008 4.008 27 N -0.095 5.095 28 O 0.013 5.987 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.176 0.824 36 H 0.137 0.863 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -36.423 -4.878 -4.464 37.019 hybrid contribution 0.072 0.546 1.412 1.516 sum -36.351 -4.332 -3.052 36.735 Atomic orbital electron populations 1.20767 0.76502 1.07685 1.06983 1.29877 1.00499 0.79641 0.93203 1.71896 1.00124 1.30013 1.22172 1.25958 0.95508 0.88458 1.01657 1.19865 0.82897 0.94816 0.95306 0.89222 1.21849 1.01235 1.02647 0.93919 1.60320 1.19671 1.32351 1.18376 1.22571 0.91334 0.94633 0.93837 0.89329 1.23009 0.94948 1.01754 0.96232 1.22690 0.96704 1.02357 0.81407 1.48366 1.04507 1.71637 1.10482 1.19700 0.82618 0.75906 0.88401 1.90684 1.82932 1.51372 1.19421 1.23195 0.94268 1.06901 1.00800 1.84753 0.99709 1.95688 1.14919 1.22434 0.94514 1.56940 0.93741 0.91812 1.25522 0.96243 0.92882 1.01093 1.70008 1.04926 1.48098 1.32238 0.85894 0.79717 0.80568 0.80367 1.18624 1.18165 1.16322 1.22084 0.84164 1.01182 0.93338 1.74715 0.97920 1.16017 1.20838 1.85323 1.11343 1.36403 1.65628 0.86153 0.86242 0.86424 0.91390 0.90843 0.92925 0.82371 0.86305 0.89851 0.89550 0.88946 0.86907 0.87112 0.91325 0.92144 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.03 10.51 71.24 0.75 0.78 16 2 C 0.19 2.07 8.51 88.38 0.75 2.82 16 3 N -0.51 -8.31 11.55 -303.17 -3.50 -11.81 16 4 C 0.16 2.89 6.71 138.46 0.93 3.81 16 5 C 0.18 2.96 3.16 44.17 0.14 3.10 16 6 H 0.09 1.25 7.46 -2.39 -0.02 1.23 16 7 C -0.14 -2.46 9.21 71.98 0.66 -1.79 16 8 N -0.67 -10.76 6.13 -467.24 -2.86 -13.63 16 9 C 0.09 1.28 3.24 46.10 0.15 1.43 16 10 H 0.09 1.02 7.49 -2.38 -0.02 1.00 16 11 C -0.12 -1.50 6.51 32.06 0.21 -1.29 16 12 C 0.09 1.60 6.70 86.93 0.58 2.18 16 13 N -0.61 -16.72 3.33 -811.34 -2.70 -19.42 16 14 C 0.55 20.54 7.87 87.66 0.69 21.23 16 15 O -0.57 -26.15 16.19 -3.02 -0.05 -26.20 16 16 C -0.10 -3.99 5.16 71.24 0.37 -3.62 16 17 S -0.18 -9.24 18.55 -56.49 -1.05 -10.28 16 18 C -0.53 -31.19 10.04 67.95 0.68 -30.50 16 19 H 0.06 3.94 8.03 -2.91 -0.02 3.92 16 20 C 0.05 2.86 5.50 84.86 0.47 3.32 16 21 N -0.91 -55.95 13.97 21.65 0.30 -55.65 16 22 Si 0.91 45.64 27.74 68.60 1.90 47.54 16 23 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.24 -12.05 6.74 99.48 0.67 -11.38 16 26 C 0.12 2.71 5.12 86.73 0.44 3.15 16 27 N -0.39 -7.85 12.15 -60.29 -0.73 -8.58 16 28 O 0.07 1.14 11.31 74.82 0.85 1.99 16 29 H 0.12 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.12 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.34 6.09 -2.39 -0.01 1.32 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.36 5.18 8.08 -89.70 -0.72 4.45 16 36 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.53 7.47 -2.39 -0.02 1.51 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 41 H 0.11 4.06 7.85 -2.39 -0.02 4.04 16 42 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.06 1.69 8.03 -2.38 -0.02 1.68 16 44 H 0.06 1.50 7.49 -2.39 -0.02 1.48 16 Total: -1.00 -81.71 379.68 -0.76 -82.47 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.27 Total: 8.95 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.82 Total: 4.62 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -9.50 Total: -109.08 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.80 Total: -24.21 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.05 Total: -10.28 kcal Total: -81.71 -0.76 -82.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731430882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.352 kcal (2) G-P(sol) polarization free energy of solvation -81.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds