Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47359 * 2 1 4 4 N 1.29431 * 124.79986 * 90.01707 * 3 2 1 5 5 C 1.30944 * 117.36018 * 179.97438 * 4 3 2 6 6 C 1.35668 * 114.19279 * 0.02562 * 5 4 3 7 7 C 1.46677 * 126.13002 * 179.97438 * 6 5 4 8 8 O 1.21682 * 120.00109 * 359.72831 * 7 6 5 9 9 N 1.34784 * 119.99881 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72848 * 9 7 6 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47387 * 64.99730 * 11 10 9 13 13 C 1.52999 * 109.46790 * 185.00148 * 11 10 9 14 14 N 1.46906 * 109.47063 * 304.99480 * 11 10 9 15 15 C 1.46894 * 111.00057 * 155.00152 * 14 11 10 16 16 C 1.50701 * 109.47335 * 179.97438 * 15 14 11 17 17 O 1.21296 * 119.99617 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99978 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99805 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00195 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00388 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00318 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99564 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47170 * 89.99788 * 23 21 19 25 25 H 1.48498 * 109.46896 * 209.99941 * 23 21 19 26 26 H 1.48507 * 109.46912 * 329.99573 * 23 21 19 27 27 S 1.70949 * 124.80630 * 270.29854 * 3 2 1 28 28 H 1.08996 * 109.47541 * 300.00338 * 1 2 3 29 29 H 1.09006 * 109.47214 * 60.00079 * 1 2 3 30 30 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47541 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.46778 * 119.99758 * 2 1 3 33 33 H 1.08000 * 122.90455 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99846 * 359.72636 * 9 7 6 35 35 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 36 36 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 37 37 H 1.08995 * 109.47897 * 59.99393 * 13 11 10 38 38 H 1.09005 * 109.47157 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.46691 * 299.99266 * 13 11 10 40 40 H 1.00899 * 110.99384 * 31.04667 * 14 11 10 41 41 H 1.09001 * 109.47229 * 300.00636 * 15 14 11 42 42 H 1.09009 * 109.46902 * 60.00440 * 15 14 11 43 43 H 0.96991 * 119.99853 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00010 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2789 2.1171 1.0628 5 6 2.7122 3.3411 0.8933 6 6 2.8422 3.7099 -0.4058 7 6 3.3033 5.0145 -0.8925 8 8 3.6067 5.8869 -0.1002 9 7 3.3861 5.2488 -2.2172 10 6 3.8410 6.5538 -2.7033 11 6 3.8426 6.5558 -4.2333 12 1 2.8206 6.4525 -4.5978 13 6 4.4346 7.8721 -4.7409 14 7 4.6532 5.4330 -4.7236 15 6 4.2325 5.0293 -6.0719 16 6 5.0851 3.8784 -6.5406 17 8 5.9571 3.4376 -5.8219 18 7 4.8786 3.3390 -7.7584 19 6 5.6538 2.2917 -8.1845 20 1 6.4297 1.8986 -7.5443 21 6 5.4407 1.7351 -9.4397 22 7 6.1835 0.7310 -9.8479 23 14 4.0982 2.4146 -10.5468 24 1 4.6573 3.4971 -11.3956 25 1 3.5733 1.3280 -11.4123 26 1 2.9967 2.9585 -9.7124 27 16 2.3508 2.3432 -1.4036 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9460 4.0000 1.7164 34 1 3.1446 4.5532 -2.8488 35 1 3.1689 7.3312 -2.3400 36 1 4.8499 6.7459 -2.3383 37 1 5.4565 7.9755 -4.3764 38 1 4.4361 7.8734 -5.8309 39 1 3.8330 8.7052 -4.3771 40 1 4.6152 4.6534 -4.0843 41 1 3.1870 4.7220 -6.0495 42 1 4.3496 5.8698 -6.7560 43 1 4.1815 3.6918 -8.3331 44 1 6.0344 0.3422 -10.7241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731639165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -26.406014 kcal Electronic energy + Delta-G solvation = -26419.647387 eV Core-core repulsion = 22498.919510 eV Total energy + Delta-G solvation = -3920.727876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50318 -39.57461 -38.61359 -37.12919 -34.41155 -34.29305 -33.87272 -31.76166 -31.24735 -30.15998 -27.20780 -26.65599 -25.76846 -23.85654 -23.25256 -21.97455 -20.85604 -19.91828 -19.43571 -18.71840 -18.42472 -17.35077 -16.35319 -16.32886 -15.91514 -15.49172 -15.30525 -15.18662 -14.89061 -14.74125 -14.46691 -14.22922 -13.95021 -13.78470 -13.26729 -12.99170 -12.87225 -12.72975 -12.58955 -12.25338 -12.16764 -12.09808 -11.97132 -11.82305 -11.64226 -11.60406 -11.24814 -11.01914 -10.64588 -10.50113 -10.02565 -10.02345 -9.84761 -9.62915 -9.43889 -9.21286 -8.67200 -8.31694 -8.23030 -6.36020 -3.87799 -0.08580 0.82980 1.24980 2.14252 2.75187 2.91809 2.97097 3.02541 3.10940 3.66063 3.67266 3.91729 4.05424 4.41957 4.47094 4.56588 4.69171 4.73703 4.75706 4.94186 5.00247 5.10981 5.16288 5.17597 5.38755 5.40297 5.47903 5.48600 5.60175 5.61110 5.69722 5.74814 5.79593 5.83736 5.85222 5.99438 6.21477 6.94504 7.01763 7.28771 7.38279 7.52444 7.79309 8.08828 8.53988 8.89632 9.36749 9.76225 10.76954 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.002963 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.142511 B = 9447.017881 C =11753.326594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C 0.065 3.935 4 N -0.479 5.479 5 C 0.124 3.876 6 C -0.301 4.301 7 C 0.602 3.398 8 O -0.525 6.525 9 N -0.726 5.726 10 C 0.119 3.881 11 C 0.070 3.930 12 H 0.050 0.950 13 C -0.138 4.138 14 N -0.664 5.664 15 C 0.046 3.954 16 C 0.448 3.552 17 O -0.563 6.563 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 S 0.177 5.823 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.188 0.812 34 H 0.397 0.603 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.347 0.653 41 H 0.045 0.955 42 H 0.091 0.909 43 H 0.370 0.630 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 5.877 15.271 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.209 4.209 4 N -0.193 5.193 5 C -0.034 4.034 6 C -0.425 4.425 7 C 0.387 3.613 8 O -0.403 6.403 9 N -0.378 5.378 10 C -0.005 4.005 11 C -0.040 4.040 12 H 0.068 0.932 13 C -0.196 4.196 14 N -0.299 5.299 15 C -0.087 4.087 16 C 0.233 3.767 17 O -0.445 6.445 18 N -0.228 5.228 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 S 0.434 5.566 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.205 0.795 34 H 0.232 0.768 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.523 5.982 15.321 21.292 hybrid contribution -1.693 0.178 -0.572 1.796 sum -15.216 6.160 14.748 22.067 Atomic orbital electron populations 1.21786 0.93045 1.03001 1.02776 1.20365 0.97023 0.87045 1.05051 1.27589 1.00308 1.02025 0.91008 1.66241 1.15893 1.06080 1.31127 1.22186 0.94570 0.91253 0.95427 1.25741 1.18130 1.00531 0.98093 1.16632 0.77341 0.85015 0.82301 1.90842 1.49426 1.44925 1.55081 1.45947 1.68518 1.16887 1.06490 1.21693 1.01488 0.83965 0.93325 1.21841 0.95687 0.93951 0.92502 0.93207 1.21738 1.01814 0.94359 1.01712 1.60117 1.55715 1.10938 1.03141 1.21811 0.96637 0.98409 0.91861 1.19670 0.87588 0.86157 0.83265 1.90581 1.35022 1.63779 1.55116 1.42197 1.33202 1.32233 1.15191 1.19429 1.14776 1.07875 1.01394 0.86257 1.25040 0.97765 0.96319 0.96975 1.69620 1.38862 1.23218 1.20260 0.86676 0.81784 0.79549 0.81376 1.19574 1.20162 1.19554 1.84169 1.57229 1.04067 1.11122 0.91855 0.92221 0.90969 0.88937 0.88222 0.79472 0.76795 0.90303 0.89756 0.91315 0.91920 0.92335 0.83129 0.93711 0.89134 0.79697 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.05 -0.37 6.51 -27.88 -0.18 -0.55 16 3 C 0.07 0.63 6.64 -13.29 -0.09 0.54 16 4 N -0.48 -5.41 10.51 -11.50 -0.12 -5.53 16 5 C 0.12 1.41 11.09 -18.85 -0.21 1.20 16 6 C -0.30 -3.49 6.48 -37.10 -0.24 -3.73 16 7 C 0.60 7.75 7.79 -12.85 -0.10 7.65 16 8 O -0.52 -8.13 16.87 5.20 0.09 -8.04 16 9 N -0.73 -8.16 4.99 -61.62 -0.31 -8.46 16 10 C 0.12 1.26 5.31 -4.04 -0.02 1.24 16 11 C 0.07 0.74 2.81 -67.71 -0.19 0.55 16 12 H 0.05 0.47 7.80 -51.93 -0.40 0.07 16 13 C -0.14 -1.33 9.41 37.16 0.35 -0.98 16 14 N -0.66 -9.52 5.93 -107.99 -0.64 -10.16 16 15 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 16 C 0.45 9.70 7.82 -10.98 -0.09 9.61 16 17 O -0.56 -14.64 15.78 5.54 0.09 -14.55 16 18 N -0.59 -13.47 5.09 -10.96 -0.06 -13.52 16 19 C -0.31 -8.43 10.16 -14.94 -0.15 -8.58 16 20 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.19 13.96 55.50 0.77 -24.41 16 23 Si 0.88 18.76 27.74 -169.99 -4.71 14.04 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 27 S 0.18 1.73 22.31 -107.50 -2.40 -0.67 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 34 H 0.40 4.14 6.55 -40.82 -0.27 3.87 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 39 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.35 5.24 6.41 -39.29 -0.25 4.99 16 41 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 42 H 0.09 1.24 7.44 -51.92 -0.39 0.85 16 43 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -34.24 385.78 -8.28 -42.53 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.13 Total: 14.79 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.68 Total: 8.18 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.35 Total: -62.09 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.18 Total: -22.59 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.04 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.24 -8.28 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731639165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.123 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds