Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47359 * 2 1 4 4 N 1.29431 * 124.79986 * 90.01707 * 3 2 1 5 5 C 1.30944 * 117.36018 * 179.97438 * 4 3 2 6 6 C 1.35668 * 114.19279 * 0.02562 * 5 4 3 7 7 C 1.46677 * 126.13002 * 179.97438 * 6 5 4 8 8 O 1.21682 * 120.00109 * 359.72831 * 7 6 5 9 9 N 1.34784 * 119.99881 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72848 * 9 7 6 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47387 * 64.99730 * 11 10 9 13 13 C 1.52999 * 109.46790 * 185.00148 * 11 10 9 14 14 N 1.46906 * 109.47063 * 304.99480 * 11 10 9 15 15 C 1.46894 * 111.00057 * 155.00152 * 14 11 10 16 16 C 1.50701 * 109.47335 * 179.97438 * 15 14 11 17 17 O 1.21296 * 119.99617 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99978 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99805 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00195 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00388 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00318 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99564 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47170 * 89.99788 * 23 21 19 25 25 H 1.48498 * 109.46896 * 209.99941 * 23 21 19 26 26 H 1.48507 * 109.46912 * 329.99573 * 23 21 19 27 27 S 1.70949 * 124.80630 * 270.29854 * 3 2 1 28 28 H 1.08996 * 109.47541 * 300.00338 * 1 2 3 29 29 H 1.09006 * 109.47214 * 60.00079 * 1 2 3 30 30 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47541 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.46778 * 119.99758 * 2 1 3 33 33 H 1.08000 * 122.90455 * 180.02562 * 5 4 3 34 34 H 0.97005 * 119.99846 * 359.72636 * 9 7 6 35 35 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 36 36 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 37 37 H 1.08995 * 109.47897 * 59.99393 * 13 11 10 38 38 H 1.09005 * 109.47157 * 179.97438 * 13 11 10 39 39 H 1.09007 * 109.46691 * 299.99266 * 13 11 10 40 40 H 1.00899 * 110.99384 * 31.04667 * 14 11 10 41 41 H 1.09001 * 109.47229 * 300.00636 * 15 14 11 42 42 H 1.09009 * 109.46902 * 60.00440 * 15 14 11 43 43 H 0.96991 * 119.99853 * 0.02562 * 18 16 15 44 44 H 0.97005 * 120.00010 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2789 2.1171 1.0628 5 6 2.7122 3.3411 0.8933 6 6 2.8422 3.7099 -0.4058 7 6 3.3033 5.0145 -0.8925 8 8 3.6067 5.8869 -0.1002 9 7 3.3861 5.2488 -2.2172 10 6 3.8410 6.5538 -2.7033 11 6 3.8426 6.5558 -4.2333 12 1 2.8206 6.4525 -4.5978 13 6 4.4346 7.8721 -4.7409 14 7 4.6532 5.4330 -4.7236 15 6 4.2325 5.0293 -6.0719 16 6 5.0851 3.8784 -6.5406 17 8 5.9571 3.4376 -5.8219 18 7 4.8786 3.3390 -7.7584 19 6 5.6538 2.2917 -8.1845 20 1 6.4297 1.8986 -7.5443 21 6 5.4407 1.7351 -9.4397 22 7 6.1835 0.7310 -9.8479 23 14 4.0982 2.4146 -10.5468 24 1 4.6573 3.4971 -11.3956 25 1 3.5733 1.3280 -11.4123 26 1 2.9967 2.9585 -9.7124 27 16 2.3508 2.3432 -1.4036 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.9460 4.0000 1.7164 34 1 3.1446 4.5532 -2.8488 35 1 3.1689 7.3312 -2.3400 36 1 4.8499 6.7459 -2.3383 37 1 5.4565 7.9755 -4.3764 38 1 4.4361 7.8734 -5.8309 39 1 3.8330 8.7052 -4.3771 40 1 4.6152 4.6534 -4.0843 41 1 3.1870 4.7220 -6.0495 42 1 4.3496 5.8698 -6.7560 43 1 4.1815 3.6918 -8.3331 44 1 6.0344 0.3422 -10.7241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731639165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = -54.255816 kcal Electronic energy + Delta-G solvation = -26420.855045 eV Core-core repulsion = 22498.919510 eV Total energy + Delta-G solvation = -3921.935534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40788 -40.55927 -40.18669 -38.25647 -36.01941 -35.16158 -34.98589 -33.73763 -32.31093 -30.97957 -28.30131 -27.82986 -26.62784 -25.48320 -23.92515 -22.84584 -21.76407 -21.30975 -20.76448 -20.24695 -19.50530 -18.35489 -17.63283 -17.25793 -17.01162 -16.95948 -16.55817 -16.15886 -16.02782 -15.61972 -15.50944 -15.34967 -14.95984 -14.91917 -14.53552 -14.44160 -14.22238 -13.68483 -13.67176 -13.36453 -13.26969 -12.98696 -12.86040 -12.72711 -12.61966 -12.55435 -12.39314 -12.11158 -11.96071 -11.90279 -11.49914 -11.47998 -10.85284 -10.71530 -10.43011 -10.34242 -10.23371 -10.02191 -9.40658 -8.39530 -6.00637 -0.91997 0.02874 0.43073 1.26170 1.31589 1.37813 1.46450 1.84798 1.96859 1.98878 2.24796 2.67897 2.95745 3.16917 3.32878 3.55874 3.69281 3.80833 4.09013 4.10900 4.17346 4.22256 4.25168 4.32545 4.41343 4.55994 4.58311 4.63271 4.77712 4.91655 4.93973 4.97206 5.03628 5.04706 5.11597 5.29531 5.45233 5.54299 5.89817 6.02334 6.10581 6.27307 6.46605 6.61003 6.84021 6.89897 7.41327 7.97974 8.78033 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.002963 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.142511 B = 9447.017881 C =11753.326594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C 0.068 3.932 4 N -0.499 5.499 5 C 0.121 3.879 6 C -0.322 4.322 7 C 0.601 3.399 8 O -0.559 6.559 9 N -0.719 5.719 10 C 0.120 3.880 11 C 0.078 3.922 12 H 0.076 0.924 13 C -0.137 4.137 14 N -0.685 5.685 15 C 0.059 3.941 16 C 0.447 3.553 17 O -0.614 6.614 18 N -0.589 5.589 19 C -0.328 4.328 20 H 0.054 0.946 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.260 1.260 25 H -0.277 1.277 26 H -0.227 1.227 27 S 0.199 5.801 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.192 0.808 34 H 0.402 0.598 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.340 0.660 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.390 0.610 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.153 7.338 14.081 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 C -0.206 4.206 4 N -0.214 5.214 5 C -0.038 4.038 6 C -0.446 4.446 7 C 0.387 3.613 8 O -0.439 6.439 9 N -0.370 5.370 10 C -0.003 4.003 11 C -0.032 4.032 12 H 0.094 0.906 13 C -0.195 4.195 14 N -0.321 5.321 15 C -0.073 4.073 16 C 0.235 3.765 17 O -0.499 6.499 18 N -0.231 5.231 19 C -0.457 4.457 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.575 5.575 23 Si 0.784 3.216 24 H -0.184 1.184 25 H -0.202 1.202 26 H -0.150 1.150 27 S 0.456 5.544 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.209 0.791 34 H 0.238 0.762 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.160 0.840 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.226 0.774 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.954 7.467 14.120 23.293 hybrid contribution -0.531 -0.351 -0.094 0.643 sum -17.485 7.117 14.026 23.518 Atomic orbital electron populations 1.21781 0.91997 1.04106 1.02387 1.20580 0.97807 0.85324 1.06075 1.28174 0.98828 1.02931 0.90651 1.66297 1.16965 1.06205 1.31885 1.22341 0.94212 0.91522 0.95698 1.25682 1.19422 1.00868 0.98671 1.16804 0.76877 0.85106 0.82522 1.90814 1.51145 1.46074 1.55892 1.45918 1.67765 1.17305 1.06062 1.21731 1.00934 0.84035 0.93599 1.21907 0.96454 0.92819 0.91979 0.90611 1.21756 1.01368 0.94609 1.01791 1.60121 1.57577 1.11599 1.02771 1.21754 0.96782 0.96148 0.92624 1.20976 0.86937 0.86539 0.82033 1.90563 1.37365 1.65511 1.56419 1.42008 1.33411 1.31481 1.16170 1.18992 1.15047 1.10155 1.01538 0.92752 1.26118 1.00794 0.96111 0.98332 1.69808 1.41388 1.25161 1.21192 0.85373 0.78569 0.78906 0.78711 1.18410 1.20179 1.15024 1.84019 1.56735 1.03027 1.10576 0.92706 0.92136 0.89138 0.87481 0.87607 0.79142 0.76208 0.88775 0.91489 0.92896 0.91690 0.89870 0.83984 0.89826 0.86460 0.77415 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 71.98 0.71 -0.68 16 2 C -0.06 -0.69 6.51 29.85 0.19 -0.49 16 3 C 0.07 1.26 6.64 88.46 0.59 1.85 16 4 N -0.50 -11.12 10.51 -190.30 -2.00 -13.12 16 5 C 0.12 2.78 11.09 84.23 0.93 3.71 16 6 C -0.32 -7.45 6.48 23.88 0.15 -7.29 16 7 C 0.60 15.42 7.79 86.45 0.67 16.09 16 8 O -0.56 -17.54 16.87 -4.29 -0.07 -17.62 16 9 N -0.72 -15.40 4.99 -467.09 -2.33 -17.73 16 10 C 0.12 2.36 5.31 86.38 0.46 2.82 16 11 C 0.08 1.40 2.81 44.91 0.13 1.53 16 12 H 0.08 1.05 7.80 -2.39 -0.02 1.03 16 13 C -0.14 -2.22 9.41 71.98 0.68 -1.54 16 14 N -0.69 -18.22 5.93 -495.57 -2.94 -21.16 16 15 C 0.06 1.59 5.96 85.56 0.51 2.11 16 16 C 0.45 19.01 7.82 87.66 0.69 19.70 16 17 O -0.61 -32.85 15.78 -3.08 -0.05 -32.90 16 18 N -0.59 -26.32 5.09 -306.98 -1.56 -27.88 16 19 C -0.33 -18.64 10.16 84.04 0.85 -17.79 16 20 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 21 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 22 N -0.93 -55.27 13.96 21.66 0.30 -54.97 16 23 Si 0.96 37.13 27.74 68.60 1.90 39.03 16 24 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 25 H -0.28 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.23 -7.12 6.52 99.48 0.65 -6.47 16 27 S 0.20 3.69 22.31 -56.49 -1.26 2.43 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.19 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.40 7.78 6.55 -92.70 -0.61 7.17 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.04 7.45 -2.38 -0.02 1.02 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.34 9.87 6.41 -89.69 -0.58 9.30 16 41 H 0.08 1.69 8.06 -2.39 -0.02 1.67 16 42 H 0.12 2.64 7.44 -2.38 -0.02 2.62 16 43 H 0.39 14.16 5.76 -92.71 -0.53 13.63 16 44 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -80.49 385.78 -1.69 -82.17 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.72 Total: 42.07 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.04 Total: 19.66 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -8.53 Total: -134.86 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -0.12 Total: -50.51 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 1.90 Total: 39.03 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.26 Total: 2.43 kcal Total: -80.49 -1.69 -82.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731639165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.917 kcal (2) G-P(sol) polarization free energy of solvation -80.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds