Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47233 * 2 1 4 4 C 1.50699 * 109.47302 * 120.00164 * 2 1 3 5 5 N 1.29945 * 126.28467 * 299.96791 * 4 2 1 6 6 O 1.21302 * 110.24871 * 180.02562 * 5 4 2 7 7 C 1.33638 * 109.81150 * 0.02562 * 6 5 4 8 8 C 1.50706 * 126.54884 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47039 * 270.02043 * 8 7 6 10 10 C 1.47967 * 111.00177 * 189.99897 * 9 8 7 11 11 C 1.53934 * 86.18229 * 222.42116 * 10 9 8 12 12 N 1.46499 * 113.73431 * 269.25860 * 11 10 9 13 13 C 1.34779 * 119.99839 * 203.10356 * 12 11 10 14 14 O 1.21274 * 119.99971 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99851 * 179.97438 * 13 12 11 16 16 S 1.80994 * 109.47058 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00183 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99546 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00277 * 179.97438 * 17 16 15 20 20 N 1.31635 * 120.00215 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99976 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47168 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46848 * 120.00808 * 21 19 17 24 24 H 1.48497 * 109.47085 * 240.00100 * 21 19 17 25 25 C 1.48193 * 111.06841 * 90.57145 * 9 8 7 26 26 N 1.31132 * 106.90105 * 0.22513 * 7 6 5 27 27 H 1.09001 * 109.46540 * 300.00114 * 1 2 3 28 28 H 1.08998 * 109.47244 * 60.00004 * 1 2 3 29 29 H 1.08999 * 109.46825 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47034 * 240.00063 * 2 1 3 31 31 H 1.08995 * 109.47341 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46611 * 300.00507 * 3 2 1 33 33 H 1.09002 * 109.47059 * 60.00079 * 3 2 1 34 34 H 1.09001 * 109.46897 * 150.02630 * 8 7 6 35 35 H 1.08997 * 109.47189 * 30.02935 * 8 7 6 36 36 H 1.09001 * 113.75575 * 108.09971 * 10 9 8 37 37 H 1.08993 * 113.75515 * 336.74204 * 10 9 8 38 38 H 1.09002 * 113.73279 * 138.08098 * 11 10 9 39 39 H 0.96999 * 120.00392 * 23.09543 * 12 11 10 40 40 H 1.09004 * 109.46849 * 299.99813 * 15 13 12 41 41 H 1.08997 * 109.47278 * 59.99801 * 15 13 12 42 42 H 0.96991 * 120.00333 * 179.97438 * 20 19 17 43 43 H 1.09000 * 113.75997 * 23.23547 * 25 9 8 44 44 H 1.09002 * 113.81982 * 251.81037 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7955 -0.3743 2.4631 6 8 2.3423 -1.1471 3.2215 7 6 3.0004 -2.0774 2.5234 8 6 3.8082 -3.2181 3.0870 9 7 5.2009 -2.7884 3.2698 10 6 6.0729 -3.9393 3.5931 11 6 6.7291 -3.0172 4.6366 12 7 7.8757 -2.2652 4.1209 13 6 8.8132 -1.7996 4.9699 14 8 8.7073 -2.0028 6.1608 15 6 9.9930 -1.0265 4.4393 16 16 11.0642 -0.5411 5.8151 17 6 12.3234 0.3200 4.9333 18 1 12.2648 0.4101 3.8587 19 6 13.3901 0.8834 5.6199 20 7 13.4612 0.7740 6.9298 21 14 14.7254 1.7957 4.6849 22 1 14.4144 1.7765 3.2330 23 1 14.7890 3.2017 5.1587 24 1 16.0341 1.1346 4.9201 25 6 5.4106 -2.2229 4.6235 26 7 2.8135 -1.8050 1.2544 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.7759 -4.0617 2.3974 35 1 3.3913 -3.5184 4.0483 36 1 6.7396 -4.2271 2.7802 37 1 5.5404 -4.7852 4.0276 38 1 6.9361 -3.5082 5.5875 39 1 7.9602 -2.1024 3.1684 40 1 10.5540 -1.6513 3.7444 41 1 9.6399 -0.1344 3.9220 42 1 14.2068 1.1674 7.4095 43 1 4.6840 -2.5658 5.3601 44 1 5.5491 -1.1417 4.6323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732094223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = 34.450997 kcal Electronic energy + Delta-G solvation = -25993.447690 eV Core-core repulsion = 22075.358772 eV Total energy + Delta-G solvation = -3918.088918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.65028 -41.53729 -39.85166 -37.90533 -35.97450 -34.96297 -34.58403 -33.32926 -31.34994 -29.84779 -28.21182 -27.67704 -27.20740 -25.99781 -25.64388 -23.84168 -22.13910 -21.14595 -20.79317 -19.82866 -19.19485 -18.68870 -17.98309 -17.36959 -16.88541 -16.81538 -16.67552 -16.26030 -16.15143 -16.04966 -15.58053 -15.18988 -14.69808 -14.50632 -14.46675 -14.11868 -13.96039 -13.57721 -13.47006 -13.25461 -13.16154 -12.92599 -12.85085 -12.75620 -12.63120 -12.62155 -12.45283 -12.27610 -12.16139 -11.98048 -11.87817 -11.69790 -11.16071 -10.99237 -10.94664 -10.27778 -10.14776 -9.91160 -8.66192 -8.35218 -6.12733 0.08070 1.15328 1.26778 1.40919 1.46609 1.57868 1.58973 1.78427 2.23042 2.28094 2.53143 2.86381 2.98918 3.00419 3.31778 3.50794 3.68282 3.78263 3.93552 3.97042 4.00047 4.06722 4.14120 4.30272 4.36485 4.43890 4.49472 4.51543 4.64221 4.64799 4.70220 4.72262 4.79342 4.82380 4.87215 4.92353 5.00418 5.15460 5.17436 5.24502 5.42071 5.52946 5.79354 6.19845 6.50785 7.06419 7.12504 7.24411 8.74176 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.001966 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.747944 B =14240.484460 C =15607.434587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.168 3.832 5 N -0.404 5.404 6 O 0.065 5.935 7 C 0.197 3.803 8 C 0.111 3.889 9 N -0.491 5.491 10 C 0.024 3.976 11 C 0.106 3.894 12 N -0.693 5.693 13 C 0.539 3.461 14 O -0.562 6.562 15 C -0.131 4.131 16 S -0.147 6.147 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.273 1.273 25 C -0.012 4.012 26 N -0.492 5.492 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.416 0.584 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.111 0.889 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.485 -9.617 -15.762 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.105 4.105 5 N -0.114 5.114 6 O 0.009 5.991 7 C -0.024 4.024 8 C -0.019 4.019 9 N -0.216 5.216 10 C -0.104 4.104 11 C 0.000 4.000 12 N -0.346 5.346 13 C 0.325 3.675 14 O -0.440 6.440 15 C -0.282 4.282 16 S 0.080 5.920 17 C -0.694 4.694 18 H 0.100 0.900 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.182 1.182 23 H -0.200 1.200 24 H -0.198 1.198 25 C -0.142 4.142 26 N -0.226 5.226 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -26.915 -8.912 -14.441 31.818 hybrid contribution 0.909 0.590 -0.977 1.459 sum -26.005 -8.323 -15.418 31.357 Atomic orbital electron populations 1.21814 0.91666 1.02539 1.03607 1.19773 0.97346 0.95498 0.90141 1.21833 1.00823 0.93719 1.03605 1.26420 0.96042 0.92855 0.95171 1.74574 1.18939 1.14406 1.03474 1.85262 1.48161 1.30040 1.35587 1.29234 0.93671 0.93765 0.85723 1.21449 0.87599 0.89073 1.03748 1.68542 1.05335 1.20042 1.27699 1.24430 0.94667 0.93369 0.97941 1.22401 0.84955 0.93350 0.99302 1.45396 1.22427 1.55921 1.10807 1.19998 0.83045 0.78339 0.86146 1.90686 1.77568 1.58271 1.17436 1.23376 0.97973 1.03233 1.03659 1.85514 1.24269 1.70935 1.11303 1.23240 1.09837 1.40430 0.95939 0.90048 1.26118 1.00365 0.96690 0.95994 1.70181 1.32049 1.44044 1.08412 0.84914 0.76995 0.77533 0.78561 1.18150 1.19982 1.19795 1.24742 0.97518 1.01217 0.90692 1.71906 1.16978 1.14751 1.18982 0.92983 0.88681 0.92533 0.87174 0.93411 0.88546 0.93048 0.83971 0.86680 0.87135 0.85665 0.88258 0.74663 0.87131 0.87771 0.91975 0.87118 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.18 71.98 0.66 -0.95 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.14 -2.00 9.18 71.98 0.66 -1.34 16 4 C 0.17 3.59 6.72 138.46 0.93 4.52 16 5 N -0.40 -9.63 12.16 -60.33 -0.73 -10.37 16 6 O 0.07 1.42 11.31 74.88 0.85 2.26 16 7 C 0.20 3.54 8.07 88.38 0.71 4.26 16 8 C 0.11 1.04 5.42 85.56 0.46 1.50 16 9 N -0.49 -6.44 6.14 -912.12 -5.60 -12.04 16 10 C 0.02 0.22 7.69 86.41 0.66 0.88 16 11 C 0.11 1.92 4.39 46.55 0.20 2.13 16 12 N -0.69 -16.50 5.37 -446.11 -2.40 -18.90 16 13 C 0.54 19.19 7.85 87.66 0.69 19.87 16 14 O -0.56 -24.95 15.48 -3.01 -0.05 -25.00 16 15 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 16 S -0.15 -8.16 20.57 -56.49 -1.16 -9.32 16 17 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 18 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 19 C 0.01 0.75 5.49 84.86 0.47 1.21 16 20 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 21 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C -0.01 -0.19 7.77 86.36 0.67 0.48 16 26 N -0.49 -10.56 11.55 -303.21 -3.50 -14.06 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.14 0.76 8.08 -2.39 -0.02 0.74 16 35 H 0.12 0.44 7.39 -2.39 -0.02 0.42 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.13 0.33 7.92 -2.39 -0.02 0.31 16 38 H 0.10 2.09 7.51 -2.39 -0.02 2.07 16 39 H 0.42 8.00 8.74 -92.71 -0.81 7.19 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.11 1.23 7.49 -2.39 -0.02 1.22 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -82.27 390.30 -2.90 -85.17 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.21 Total: 15.06 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 7.17 Total: -3.00 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -11.95 Total: -111.02 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.80 Total: -22.74 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.32 kcal Total: -82.27 -2.90 -85.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732094223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.624 kcal (2) G-P(sol) polarization free energy of solvation -82.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds